Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

31408985 .. 31411619

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATATCCGAATTCTCCTTGACCTGGTTGATGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGTTTGGTGATAAAAAATCATATTTTCGCCATGCTTCAGGTGAGATGTATGTCATTTCTCAAGCTCCTATCATCATTAGTTTCATCAAGGAACAAGCACTACAAAAAAGAATTGATGTAATTGATATTTTTGCCATGCTTCATGTGAGATGTATGACATTTCTCAAGAGCACTAACTTGAATTCTGTGAGTTGTTCTGCAGAGATATTCTCCGTACCTATGCCCATGATGATGTCAGTGTTGGATCTTGGTTTATTAGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTTCTCTTGGACAGGAGGAGCCATTTGTGCTGGTGTATGATTTATTTGCTTTGAGGTGGTGGATCAAAGTAAAACCAGATGTTGGGAGATGGTTTAAAAGACATTGGATTCATATCCGTGAGATGATTGCTGCCTGCACAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

168

Amino Acids

19.71

Weight (kDa)

8.45

Isoelectric Point (pI)

59.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	443
AclWI	GGATC	2 cut(s)	315, 431
AcsI	RAATTY	2 cut(s)	11, 244
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	24, 443
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	315, 431
ApeKI	GCWGC	2 cut(s)	359, 491
ApoI	RAATTY	2 cut(s)	11, 244
AsuHPI	GGTGA	2 cut(s)	83, 116
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	346, 478
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	360, 492
BlsI	GCNGC	2 cut(s)	361, 493
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpuEI	CTTGAG	2 cut(s)	108, 212
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 443
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	2 cut(s)	24, 443
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	346, 478
BsgI	GTGCAG	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	24, 443
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	307, 423
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	315, 431
BssMI	GATC	2 cut(s)	307, 423
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	496
BstKTI	GATC	2 cut(s)	310, 426
BstMBI	GATC	2 cut(s)	307, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	346, 478
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	496
CseI	GACGC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	4 cut(s)	95, 199, 206, 289
CviJI	RGCY	3 cut(s)	128, 324, 382
CviKI_1	RGCY	3 cut(s)	128, 324, 382
CviQI	GTAC	1 cut(s)	278
DpnI	GATC	2 cut(s)	309, 425
DpnII	GATC	2 cut(s)	307, 423
DraI	TTTAAA	1 cut(s)	457
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	84
EcoRI	GAATTC	2 cut(s)	11, 244
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	4 cut(s)	98, 202, 209, 292
FatI	CATG	4 cut(s)	94, 198, 205, 288
Fnu4HI	GCNGC	2 cut(s)	360, 492
Fsp4HI	GCNGC	2 cut(s)	360, 492
GluI	GCNGC	2 cut(s)	360, 492
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	98, 202, 209, 292
HinfI	GANTC	2 cut(s)	34, 469
HphI	GGTGA	2 cut(s)	83, 116
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	263, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	98, 202, 209, 292
Kzo9I	GATC	2 cut(s)	307, 423
LmnI	GCTCC	2 cut(s)	133, 379
LpnPI	CCDG	7 cut(s)	10, 37, 66, 87, 359, 377, 450
Lsp1109I	GCAGC	2 cut(s)	346, 478
MabI	ACCWGGT	1 cut(s)	23
MalI	GATC	2 cut(s)	309, 425
MboI	GATC	2 cut(s)	307, 423
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	4 cut(s)	11, 174, 183, 244
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	2 cut(s)	370, 408
MseI	TTAA	3 cut(s)	332, 341, 456
MslI	CAYNNNNRTG	3 cut(s)	293, 341, 477
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	2 cut(s)	307, 423
NlaIII	CATG	4 cut(s)	98, 202, 209, 292
NlaIV	GGNNCC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	361, 493
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	3 cut(s)	293, 341, 477
SaqAI	TTAA	3 cut(s)	332, 341, 456
SatI	GCNGC	2 cut(s)	360, 492
Sau3AI	GATC	2 cut(s)	307, 423
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	26, 106, 130, 283, 419
SexAI	ACCWGGT	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	3 cut(s)	293, 341, 477
SmlI	CTYRAG	2 cut(s)	123, 227
SmoI	CTYRAG	2 cut(s)	123, 227
Sse9I	AATT	4 cut(s)	11, 174, 183, 244
StyD4I	CCNGG	1 cut(s)	23
TasI	AATT	4 cut(s)	11, 174, 183, 244
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	3 cut(s)	332, 341, 456
Tru9I	TTAA	3 cut(s)	332, 341, 456
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	2 cut(s)	359, 491
TspDTI	ATGAA	4 cut(s)	63, 136, 194, 461
TspGWI	ACGGA	2 cut(s)	265, 467
TspRI	CASTG	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	443
XapI	RAATTY	2 cut(s)	11, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.