Rorug02G0091400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
7316790 .. 7316999
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0091400.1

Sequence Viewer

Length: 210 bp
ATGTCCATACTGGTTCAGCTGGAGACAGATCTCGTGAATGTGCCCTGTAGTTGGGCACTTAACTCCCTTGTCGTAGTAAAGATCCTTGAGGATCCTTATTTGATCTGGAGTAGGAACCCACCTGGCACGGCTTCGCCAGAAATCTGTGTTGGCACTACTCCCGGCTGCTTGGTTGTTTCCTCCATCCTCGATTTGTTGCTGGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.38

Weight (kDa)

4.05

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 76, 86, 99
AfiI CCNNNNNNNGG 1 cut(s) 51
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 76, 86, 99
ApeKI GCWGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 162
BaeGI GKGCMC 2 cut(s) 45, 58
BamHI GGATCC 1 cut(s) 91
BauI CACGAG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 46
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 123, 162
BmiI GGNNCC 2 cut(s) 93, 116
BmrFI CCNGG 2 cut(s) 123, 162
BpmI CTGGAG 2 cut(s) 41, 127
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 15
BseSI GKGCMC 2 cut(s) 45, 58
BseXI GCAGC 1 cut(s) 152
BseYI CCCAGC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 45, 58
Bsp143I GATC 4 cut(s) 28, 81, 91, 102
BspLI GGNNCC 2 cut(s) 93, 116
BspPI GGATC 3 cut(s) 76, 86, 99
BsrI ACTGG 1 cut(s) 15
BssMI GATC 4 cut(s) 28, 81, 91, 102
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 4 cut(s) 31, 84, 94, 105
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 28, 81, 91, 102
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 121, 160
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 2 cut(s) 45, 58
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 3 cut(s) 28, 81, 91
BstYI RGATCY 3 cut(s) 28, 81, 91
BtsCI GGATG 1 cut(s) 183
CviJI RGCY 3 cut(s) 19, 131, 165
CviKI_1 RGCY 3 cut(s) 19, 131, 165
DpnI GATC 4 cut(s) 30, 83, 93, 104
DpnII GATC 4 cut(s) 28, 81, 91, 102
EcoRII CCWGG 1 cut(s) 121
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 2 cut(s) 41, 127
HapII CCGG 1 cut(s) 162
HpaII CCGG 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 34, 106
Kzo9I GATC 4 cut(s) 28, 81, 91, 102
LpnPI CCDG 8 cut(s) 5, 58, 91, 108, 135, 150, 175, 185
Lsp1109I GCAGC 1 cut(s) 152
MalI GATC 4 cut(s) 30, 83, 93, 104
MboI GATC 4 cut(s) 28, 81, 91, 102
MflI RGATCY 3 cut(s) 28, 81, 91
MhlI GDGCHC 2 cut(s) 45, 58
MnlI CCTC 3 cut(s) 82, 190, 197
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 123, 162
MvaI CCWGG 1 cut(s) 123
NciI CCSGG 1 cut(s) 162
NdeII GATC 4 cut(s) 28, 81, 91, 102
NlaIV GGNNCC 2 cut(s) 93, 116
PkrI GCNGC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 93, 116
PsuI RGATCY 3 cut(s) 28, 81, 91
PvuII CAGCTG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 4 cut(s) 28, 81, 91, 102
ScrFI CCNGG 2 cut(s) 123, 162
SduI GDGCHC 2 cut(s) 45, 58
SetI ASST 2 cut(s) 21, 124
SfcI CTRYAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 121, 160
TaqI TCGA 1 cut(s) 189
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.