Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

47393190 .. 47402998

Gene Structure 9809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATTTTCAGAACCCTCGTGTGCAGATGTTCTGGGAGCTACACTTGCAACTCATTTAGACAAATGCCTCGTGTTTATATTGGGTGCATGAAGTCAGGCGAGGTTTTCTCTGAGACGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGGTTGGTGATAAAAAATCAGATATTCTCTGTACCTATGCCCATGATGATGTCGGTGTCGAATCTTGGTTTATTGGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACAGGAGGAGCCATTTGTGCTGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

6.69

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	181
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	167
BauI	CACGAG	2 cut(s)	17, 69
BbvI	GCAGC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BsaHI	GRCGYC	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	256, 294
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	2 cut(s)	17, 69
Bst2BI	CACGAG	2 cut(s)	17, 69
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 290
BstV1I	GCAGC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	144
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	88, 191
CviJI	RGCY	3 cut(s)	39, 226, 284
CviKI_1	RGCY	3 cut(s)	39, 226, 284
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	91, 194
FaiI	YATR	5 cut(s)	78, 89, 132, 186, 192
FatI	CATG	2 cut(s)	87, 190
Fnu4HI	GCNGC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	91, 194
HinfI	GANTC	2 cut(s)	118, 209
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	11, 112, 169
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	24, 48, 87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 290
HpyF3I	CTNAG	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	91, 194
LmnI	GCTCC	3 cut(s)	36, 269, 281
LpnPI	CCDG	5 cut(s)	18, 81, 150, 261, 279
Lsp1109I	GCAGC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	5 cut(s)	26, 78, 94, 272, 277
MseI	TTAA	2 cut(s)	234, 243
MslI	CAYNNNNRTG	2 cut(s)	195, 243
MwoI	GCNNNNNNNGC	2 cut(s)	45, 290
NlaIII	CATG	2 cut(s)	91, 194
NlaIV	GGNNCC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	195, 243
SaqAI	TTAA	2 cut(s)	234, 243
SatI	GCNGC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	127
SetI	ASST	4 cut(s)	41, 105, 153, 185
SmiMI	CAYNNNNRTG	2 cut(s)	195, 243
TaqI	TCGA	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	234, 243
Tru9I	TTAA	2 cut(s)	234, 243
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	104, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.