Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036178.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 357

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 356 bp

atggcggagtcgactgagcatcagcaactggcggccattctcggtcctgagcccgccgccactttccaaaccgtaatctcccacttaatctcctccccctcctcttcgcaaaccctaatctccgacctcatctcctccgagaagcgggccgaggccgagcacaccttcaacatctgcaagcaggccgatcacgagtcactttctctcacactcgctcagcttctccaggtctctcccgacgagaagacccgagccatgtgctccattctcctccggaagcaactactcaccgacgacctgtggcgaagactctctcctaacaccatatccaccctcaaacatactctattatcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

118

Amino Acids

13.04

Weight (kDa)

5.9

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	5 cut(s)	5, 32, 54, 57, 145
AcoI	YGGCCR	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	2 cut(s)	162, 263
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	249
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	4 cut(s)	33, 147, 153, 183
AspS9I	GGNCC	2 cut(s)	44, 147
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	251, 313
Bbv12I	GWGCWC	2 cut(s)	162, 263
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	33, 57
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	2 cut(s)	34, 58
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	44, 147
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	251, 313
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	6, 39, 230
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	4 cut(s)	82, 91, 124, 260
BshFI	GGCC	4 cut(s)	35, 149, 155, 185
BsiHKAI	GWGCWC	2 cut(s)	162, 263
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	35, 149, 155, 185
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	54, 162, 263
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	5 cut(s)	5, 32, 54, 57, 145
BspANI	GGCC	4 cut(s)	35, 149, 155, 185
BspCNI	CTCAG	3 cut(s)	7, 40, 229
BspEI	TCCGGA	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	4 cut(s)	54, 147, 179, 183
BstDEI	CTNAG	3 cut(s)	15, 48, 216
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstV2I	GAAGAC	2 cut(s)	251, 313
BsuRI	GGCC	4 cut(s)	35, 149, 155, 185
Cac8I	GCNNGC	4 cut(s)	54, 147, 179, 183
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	44, 147
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	35, 52, 149, 155, 185, 220, 254
CviKI_1	RGCY	7 cut(s)	35, 52, 149, 155, 185, 220, 254
DdeI	CTNAG	3 cut(s)	15, 48, 216
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	257, 326, 342
FatI	CATG	1 cut(s)	255
FauI	CCCGC	2 cut(s)	61, 138
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	33, 57
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	33, 57
GluI	GCNGC	2 cut(s)	33, 57
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	35, 149, 155, 185
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	8, 194, 309
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	124, 139
Hpy188III	TCNNGA	4 cut(s)	47, 191, 236, 274
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	2 cut(s)	242, 296
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	15, 48, 216
Hsp92II	CATG	1 cut(s)	259
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	7 cut(s)	14, 60, 167, 212, 239, 287, 311
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	96, 256, 318
MhlI	GDGCHC	3 cut(s)	54, 162, 263
MlyI	GAGTC	3 cut(s)	17, 203, 303
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	103, 109, 112, 137, 145, 145, 281, 344
MroI	TCCGGA	1 cut(s)	273
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	259
NmeAIII	GCCGAG	2 cut(s)	175, 181
NmuCI	GTSAC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	34, 58
PleI	GAGTC	3 cut(s)	16, 202, 303
PpsI	GAGTC	3 cut(s)	16, 202, 303
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	44, 147
PstNI	CAGNNNCTG	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	2 cut(s)	33, 57
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	44, 147
SchI	GAGTC	3 cut(s)	17, 203, 303
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	3 cut(s)	54, 162, 263
SetI	ASST	5 cut(s)	129, 167, 222, 231, 300
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	44
SsiI	CCGC	5 cut(s)	5, 32, 54, 57, 145
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	32
TauI	GCSGC	2 cut(s)	35, 59
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.