Rh7AG385300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000344
Physical Location & Seq
Forward (+)
50493201 .. 50495368
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG385300.1

Sequence Viewer

Length: 402 bp
ATGGCAATAAGCTATTGTGGCTGGACAGGAATCAAGGAGTCAAAAAGTGGAATGAACCAGAATGGTGGAAGTTTGGTGAAAAAAAATCCTCCTATCATCATTAGTTTTGTCAAGGAACAAGCACTACAAAAAAGAATTTATGTAATTGATATTTTCGCCATGCTTCATGTGAGATGTATGACATTTCTCAAGAGCACTAACTTGAATTCTGTGAGTTGTTCTGCAGAGATATTCTCCGTATCAGTGTCGGATCTTGGTTTATTTTGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACAGGAGGAGCCATTTGTGCTGGTGTATGATTTGATTTGCTTTGAGGTGGTGGATCAAAGTAAAACCAGATGCAGGGAGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

7.56

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 258, 375
AcsI RAATTY 2 cut(s) 135, 205
AcyI GRCGYC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 2 cut(s) 258, 375
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 2 cut(s) 135, 205
AsuHPI GGTGA 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 388
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 297, 335
BseXI GCAGC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 250, 367
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 2 cut(s) 258, 375
BssMI GATC 2 cut(s) 250, 367
BssNI GRCGYC 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 290
BstKTI GATC 2 cut(s) 253, 370
BstMBI GATC 2 cut(s) 250, 367
BstMWI GCNNNNNNNGC 2 cut(s) 18, 331
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 249
CseI GACGC 1 cut(s) 298
CviAII CATG 2 cut(s) 160, 167
CviJI RGCY 3 cut(s) 12, 21, 325
CviKI_1 RGCY 3 cut(s) 12, 21, 325
DpnI GATC 2 cut(s) 252, 369
DpnII GATC 2 cut(s) 250, 367
EcoRI GAATTC 1 cut(s) 205
FaeI CATG 2 cut(s) 163, 170
FaiI YATR 5 cut(s) 141, 161, 168, 179, 342
FatI CATG 2 cut(s) 159, 166
Fnu4HI GCNGC 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 2 cut(s) 163, 170
HinfI GANTC 2 cut(s) 30, 38
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 224, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 331
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 163, 170
Kzo9I GATC 2 cut(s) 250, 367
LmnI GCTCC 2 cut(s) 310, 322
LpnPI CCDG 7 cut(s) 7, 12, 71, 302, 320, 373, 394
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 374
MalI GATC 2 cut(s) 252, 369
MboI GATC 2 cut(s) 250, 367
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 3 cut(s) 135, 144, 205
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 99, 313, 318, 352
MseI TTAA 3 cut(s) 275, 284, 400
MslI CAYNNNNRTG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 18, 331
NdeII GATC 2 cut(s) 250, 367
NlaIII CATG 2 cut(s) 163, 170
NlaIV GGNNCC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 324
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 3 cut(s) 275, 284, 400
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 250, 367
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 197
SetI ASST 2 cut(s) 14, 363
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 3 cut(s) 135, 144, 205
TasI AATT 3 cut(s) 135, 144, 205
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 3 cut(s) 275, 284, 400
Tru9I TTAA 3 cut(s) 275, 284, 400
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 68, 155
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 249
XapI RAATTY 2 cut(s) 135, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.