Rw4G018940

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
41996799 .. 41998487
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018940.1

Sequence Viewer

Length: 609 bp
ATGGATTCTCCTGTCCTGTATTCAACGCGAGGAGGAGTTGTTCATCGAATTGGCTGGGACCGAGCCAAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGGTCCTATGCTGCAGATGGTTTTGGATATCGGAGGATGATCCCTCATGGCATACCGCCGAGACTGAAGATGAGGATGCTGGTGAGAGTGGTAATTGCAGTGTTGGGCAGGAGTGTTTGGATAGGCTTGCCATTTCCTTGGGTGGGAATACCATTGTTCCCGTCGCGTCCGAGCAGTTGCCTGCCCCCGAGTGGCAGAAACACCATGCAGCATTGATTGCTGAGGGTTGTTCCAAGGTAATGATAAAAAATTTGGAGCCAGTGGTGGCAGTGGTCTTGAACTCGTTTCAAGATCCTCGTCCTCGTGTAAGGTGGGCAGCTATTAATGCATTTGGGCAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAATGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGATGAATGCAAACTTGTGTTTCACAGTGATAGATACCATATTTATTGAGGCTGTGAAGAAAGTACTGTGA

Protein Analysis

202

Amino Acids

22.28

Weight (kDa)

4.76

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Importin_rep_4 PF18808 45 - 87 5.7e-08 Importin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 471
AccI GTMKAC 1 cut(s) 443
AccII CGCG 2 cut(s) 28, 266
AciI CCGC 1 cut(s) 156
AclWI GGATC 2 cut(s) 134, 386
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 603
AfiI CCNNNNNNNGG 3 cut(s) 67, 243, 291
AgsI TTSAA 4 cut(s) 24, 379, 389, 473
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 2 cut(s) 419, 503
AluI AGCT 2 cut(s) 419, 503
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 2 cut(s) 134, 386
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 1 cut(s) 454
ApaI GGGCCC 1 cut(s) 458
ApeKI GCWGC 5 cut(s) 111, 308, 416, 503, 506
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 423
AspS9I GGNCC 4 cut(s) 58, 103, 454, 455
AsuHPI GGTGA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 2 cut(s) 58, 103
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 458
BauI CACGAG 2 cut(s) 402, 531
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 5 cut(s) 98, 320, 428, 490, 493
BccI CCATC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 471
BisI GCNGC 5 cut(s) 112, 309, 417, 504, 507
BlsI GCNGC 5 cut(s) 113, 310, 418, 505, 508
BmcAI AGTACT 1 cut(s) 603
Bme18I GGWCC 2 cut(s) 58, 103
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 58, 103, 454, 455
BmiI GGNNCC 5 cut(s) 59, 72, 104, 357, 456
BmsI GCATC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 321
BsaJI CCNNGG 4 cut(s) 66, 237, 333, 510
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 243, 291
Bse1I ACTGG 1 cut(s) 359
Bse21I CCTNAGG 1 cut(s) 75
BseDI CCNNGG 4 cut(s) 66, 237, 333, 510
BseGI GGATG 3 cut(s) 142, 181, 520
BseLI CCNNNNNNNGG 3 cut(s) 67, 243, 291
BseMII CTCAG 2 cut(s) 89, 312
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 45, 48
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 5 cut(s) 98, 320, 428, 490, 493
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 28, 266
BshFI GGCC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 67, 243, 291
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 287
Bsp120I GGGCCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 139, 391
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 88, 313
BspFNI CGCG 2 cut(s) 28, 266
BspLI GGNNCC 5 cut(s) 59, 72, 104, 357, 456
BspMAI CTGCAG 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 471
BspPI GGATC 2 cut(s) 134, 386
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 4 cut(s) 66, 237, 333, 510
BssMI GATC 2 cut(s) 139, 391
BssSI CACGAG 2 cut(s) 402, 531
BssT1I CCWWGG 4 cut(s) 66, 237, 333, 510
Bst2BI CACGAG 2 cut(s) 402, 531
Bst4CI ACNGT 2 cut(s) 565, 606
BstAPI GCANNNNNTGC 2 cut(s) 317, 503
BstC8I GCNNGC 2 cut(s) 228, 282
BstDEI CTNAG 2 cut(s) 75, 321
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 3 cut(s) 142, 181, 520
BstFNI CGCG 2 cut(s) 28, 266
BstKTI GATC 2 cut(s) 142, 394
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 139, 391
BstMWI GCNNNNNNNGC 3 cut(s) 317, 425, 503
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 2 cut(s) 28, 266
BstV1I GCAGC 5 cut(s) 98, 320, 428, 490, 493
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 3 cut(s) 142, 181, 520
BtsI GCAGTG 2 cut(s) 205, 375
BtsIMutI CAGTG 4 cut(s) 205, 366, 375, 570
BveI ACCTGC 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 228, 282
Cfr13I GGNCC 4 cut(s) 58, 103, 454, 455
CseI GACGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 602
CviAII CATG 3 cut(s) 147, 305, 511
CviJI RGCY 8 cut(s) 54, 65, 226, 358, 419, 456, 503, 590
CviKI_1 RGCY 8 cut(s) 54, 65, 226, 358, 419, 456, 503, 590
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 2 cut(s) 75, 321
DpnI GATC 2 cut(s) 141, 393
DpnII GATC 2 cut(s) 139, 391
Eco130I CCWWGG 4 cut(s) 66, 237, 333, 510
Eco24I GRGCYC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 58, 103
Eco57I CTGAAG 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 103
EcoRV GATATC 1 cut(s) 129
EcoT14I CCWWGG 4 cut(s) 66, 237, 333, 510
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 4 cut(s) 66, 237, 333, 510
FaeI CATG 3 cut(s) 150, 308, 514
FaiI YATR 6 cut(s) 109, 148, 153, 306, 512, 578
FaqI GGGAC 1 cut(s) 71
FatI CATG 3 cut(s) 146, 304, 510
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 5 cut(s) 112, 309, 417, 504, 507
FokI GGATG 3 cut(s) 149, 188, 527
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 5 cut(s) 112, 309, 417, 504, 507
GluI GCNGC 5 cut(s) 112, 309, 417, 504, 507
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 255
Hin1II CATG 3 cut(s) 150, 308, 514
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 494
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 3 cut(s) 133, 271, 525
Hpy188III TCNNGA 3 cut(s) 77, 376, 389
Hpy8I GTNNAC 1 cut(s) 444
Hpy99I CGWCG 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 565, 606
HpyCH4V TGCA 7 cut(s) 114, 198, 308, 428, 466, 538, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 425, 503
HpyF3I CTNAG 2 cut(s) 75, 321
Hsp92II CATG 3 cut(s) 150, 308, 514
Kzo9I GATC 2 cut(s) 139, 391
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 5 cut(s) 98, 320, 428, 490, 493
LweI GCATC 1 cut(s) 166
MalI GATC 2 cut(s) 141, 393
MboI GATC 2 cut(s) 139, 391
MboII GAAGA 2 cut(s) 179, 607
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 48, 193, 349
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 550
MvnI CGCG 2 cut(s) 28, 266
MwoI GCNNNNNNNGC 3 cut(s) 317, 425, 503
NcoI CCATGG 1 cut(s) 510
NdeII GATC 2 cut(s) 139, 391
NlaIII CATG 3 cut(s) 150, 308, 514
NlaIV GGNNCC 5 cut(s) 59, 72, 104, 357, 456
NmeAIII GCCGAG 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 430
PctI GAATGC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 113, 310, 418, 505, 508
PpuMI RGGWCCY 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 5 cut(s) 59, 72, 104, 357, 456
PspOMI GGGCCC 1 cut(s) 454
PspPI GGNCC 4 cut(s) 58, 103, 454, 455
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 5 cut(s) 112, 309, 417, 504, 507
Sau3AI GATC 2 cut(s) 139, 391
Sau96I GGNCC 4 cut(s) 58, 103, 454, 455
ScaI AGTACT 1 cut(s) 603
SduI GDGCHC 1 cut(s) 458
SetI ASST 7 cut(s) 72, 97, 339, 413, 421, 465, 505
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 58, 103
Sse9I AATT 3 cut(s) 48, 193, 349
SsiI CCGC 1 cut(s) 156
StyI CCWWGG 4 cut(s) 66, 237, 333, 510
TaaI ACNGT 2 cut(s) 565, 606
TaqI TCGA 1 cut(s) 46
TaqII GACCGA 1 cut(s) 75
TasI AATT 3 cut(s) 48, 193, 349
TatI WGTACW 1 cut(s) 601
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 4 cut(s) 205, 366, 375, 570
TseI GCWGC 5 cut(s) 111, 308, 416, 503, 506
TspDTI ATGAA 2 cut(s) 32, 557
TspRI CASTG 4 cut(s) 205, 366, 375, 570
VpaK11BI GGWCC 2 cut(s) 58, 103
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.