Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

72861030 .. 72861542

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG505200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATGACATTCATGGAGTCTTTGAACAACGGGAACGAGGCCACGGCACAGGAGGCACTCGAGTTGTTCATCGAATTGGCTGGGACCGAGCCAAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGTTCTATGCTGCATGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGACACTTGGCCATAGAGTTTGTAATCACTCTAGCCGAGGCCAGCGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCAGTTTAGTAGTAGGTTGTTTGCCATTTTGATGAAGATGGTTTTGGATATTGAGGGTGATCCCTCATGGCATACCGCGGAGACTAAAGATGAGGATGTTGGTGAGAGTGGTAATTACAGTGTTGGGCAGGAGTGTTTGGATAGGCTTGCCATTTCCTTGGGTTGGAATACCATTGTTCCTGTCGCGTCCGAGCAGTTGCTTGCCTATTTGGCTGCCTCCGAGTGGCAGAAACACCATGCAGCATTGATTGCCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

170

Amino Acids

18.8

Weight (kDa)

4.65

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	53 - 144	6.2e-21	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	329, 437
AciI	CCGC	3 cut(s)	251, 327, 329
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	93, 414, 474
AgsI	TTSAA	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	2 cut(s)	59, 229
AoxI	GGCC	3 cut(s)	39, 183, 213
ApeKI	GCWGC	3 cut(s)	136, 464, 491
AspS9I	GGNCC	2 cut(s)	84, 171
AsuC2I	CCSGG	2 cut(s)	230, 231
AsuHPI	GGTGA	2 cut(s)	320, 365
AvaI	CYCGRG	2 cut(s)	59, 229
AvaII	GGWCC	2 cut(s)	84, 171
AxyI	CCTNAGG	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	123, 451, 503
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	230, 231
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	206
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	137, 251, 465, 492
BlsI	GCNGC	4 cut(s)	138, 252, 466, 493
Bme1390I	CCNGG	2 cut(s)	230, 231
Bme18I	GGWCC	2 cut(s)	84, 171
BmeT110I	CYCGRG	2 cut(s)	59, 229
BmgT120I	GGNCC	2 cut(s)	84, 171
BmiI	GGNNCC	3 cut(s)	85, 98, 172
BmrFI	CCNGG	2 cut(s)	230, 231
BpuMI	CCSGG	2 cut(s)	230, 231
BsaJI	CCNNGG	9 cut(s)	42, 92, 159, 210, 228, 229, 230, 327, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 414, 474
Bse21I	CCTNAGG	1 cut(s)	101
BseDI	CCNNGG	9 cut(s)	42, 92, 159, 210, 228, 229, 230, 327, 408
BseGI	GGATG	2 cut(s)	240, 352
BseLI	CCNNNNNNNGG	3 cut(s)	93, 414, 474
BseMII	CTCAG	2 cut(s)	115, 144
BseXI	GCAGC	3 cut(s)	123, 451, 503
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	329, 437
BshFI	GGCC	3 cut(s)	41, 185, 215
BsiHKCI	CYCGRG	2 cut(s)	59, 229
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	97, 184
BslI	CCNNNNNNNGG	3 cut(s)	93, 414, 474
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	97, 184
BsnI	GGCC	3 cut(s)	41, 185, 215
BsoBI	CYCGRG	2 cut(s)	59, 229
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	3 cut(s)	251, 327, 329
BspANI	GGCC	3 cut(s)	41, 185, 215
BspCNI	CTCAG	2 cut(s)	114, 145
BspFNI	CGCG	2 cut(s)	329, 437
BspLI	GGNNCC	3 cut(s)	85, 98, 172
BspPI	GGATC	1 cut(s)	305
BssECI	CCNNGG	9 cut(s)	42, 92, 159, 210, 228, 229, 230, 327, 408
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	3 cut(s)	92, 159, 408
Bst4CI	ACNGT	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	5 cut(s)	217, 221, 225, 399, 453
BstDEI	CTNAG	2 cut(s)	101, 153
BstDSI	CCRYGG	2 cut(s)	42, 327
BstF5I	GGATG	2 cut(s)	240, 352
BstFNI	CGCG	2 cut(s)	329, 437
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 461, 500
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	228, 229
BstUI	CGCG	2 cut(s)	329, 437
BstV1I	GCAGC	3 cut(s)	123, 451, 503
BstXI	CCANNNNNNTGG	2 cut(s)	181, 409
Bsu36I	CCTNAGG	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	41, 185, 215
BtgI	CCRYGG	2 cut(s)	42, 327
BtsCI	GGATG	2 cut(s)	240, 352
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	5 cut(s)	217, 221, 225, 399, 453
Cfr13I	GGNCC	2 cut(s)	84, 171
Cfr42I	CCGCGG	1 cut(s)	330
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	426
CviAII	CATG	4 cut(s)	13, 140, 318, 488
DdeI	CTNAG	2 cut(s)	101, 153
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	3 cut(s)	92, 159, 408
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	84, 171
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	59, 229
EcoT14I	CCWWGG	3 cut(s)	92, 159, 408
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	3 cut(s)	92, 159, 408
FaeI	CATG	4 cut(s)	16, 143, 321, 491
FaiI	YATR	8 cut(s)	14, 134, 141, 188, 319, 324, 489, 511
FaqI	GGGAC	2 cut(s)	97, 184
FatI	CATG	4 cut(s)	12, 139, 317, 487
Fnu4HI	GCNGC	4 cut(s)	137, 251, 465, 492
FokI	GGATG	2 cut(s)	247, 359
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	137, 251, 465, 492
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	4 cut(s)	137, 251, 465, 492
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	41, 185, 215
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	4 cut(s)	16, 143, 321, 491
HinfI	GANTC	2 cut(s)	17, 155
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	320, 365
Hpy188I	TCNGA	2 cut(s)	442, 472
Hpy188III	TCNNGA	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	139, 491, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 461, 500
HpyF3I	CTNAG	2 cut(s)	101, 153
Hsp92II	CATG	4 cut(s)	16, 143, 321, 491
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	8 cut(s)	35, 66, 88, 187, 229, 243, 365, 444
Lsp1109I	GCAGC	3 cut(s)	123, 451, 503
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	176, 298
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	74, 364
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	26, 164
MmeI	TCCRAC	1 cut(s)	395
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	230, 231
MvnI	CGCG	2 cut(s)	329, 437
MwoI	GCNNNNNNNGC	3 cut(s)	53, 461, 500
NciI	CCSGG	2 cut(s)	230, 231
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	16, 143, 321, 491
NlaIV	GGNNCC	3 cut(s)	85, 98, 172
NmeAIII	GCCGAG	1 cut(s)	235
NspI	RCATGY	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	59
PkrI	GCNGC	4 cut(s)	138, 252, 466, 493
PleI	GAGTC	2 cut(s)	25, 163
PpsI	GAGTC	2 cut(s)	25, 163
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	3 cut(s)	85, 98, 172
PspPI	GGNCC	2 cut(s)	84, 171
PspXI	VCTCGAGB	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	281
SacII	CCGCGG	1 cut(s)	330
SatI	GCNGC	4 cut(s)	137, 251, 465, 492
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	84, 171
SchI	GAGTC	2 cut(s)	26, 164
ScrFI	CCNGG	2 cut(s)	230, 231
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	4 cut(s)	98, 123, 154, 269
Sfr274I	CTCGAG	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	330
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	84, 171
SlaI	CTCGAG	1 cut(s)	59
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	74, 364
SsiI	CCGC	3 cut(s)	251, 327, 329
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	228, 229
StyI	CCWWGG	3 cut(s)	92, 159, 408
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	60, 72
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	74, 364
TauI	GCSGC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	3 cut(s)	136, 464, 491
TspDTI	ATGAA	2 cut(s)	58, 299
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	84, 171
XceI	RCATGY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	59
XmaI	CCCGGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.