Rh7AG154100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000344
Physical Location & Seq
Reverse (-)
12462043 .. 12462782
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG154100.1

Sequence Viewer

Length: 234 bp
ATGCCCATGATGATGTTAGTGTCAGATCTTGGTTTATTGGGCTTGACGTTAAACATCTTCATGACACCAAGTTTTGCTGCTCCTCTTGGACAAGAGAGCAGTAAAAATTTTGGATTTCCTTTGAAAATATGTATTCATCTCTGGAATGATGGTCAAGATTGGTACATTCTTGTATTCGTGTTCCTCTTGGTGCCCCTAGTTCCTCTTCATCTTGATGAATCCTTGGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.64

Weight (kDa)

4.51

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 1 cut(s) 124
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 143
BfaI CTAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 190
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 227
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 210
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 227
CciI TCATGA 1 cut(s) 60
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 7, 61
CviJI RGCY 2 cut(s) 42, 227
CviKI_1 RGCY 2 cut(s) 42, 227
CviQI GTAC 1 cut(s) 163
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 10, 64
FaiI YATR 3 cut(s) 8, 62, 130
FatI CATG 2 cut(s) 6, 60
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 2 cut(s) 10, 64
HinfI GANTC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 61, 142, 155, 212
HpyCH4IV ACGT 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 2 cut(s) 10, 64
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 47
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 49, 197
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 106, 229
MluNI TGGCCA 1 cut(s) 227
MnlI CCTC 3 cut(s) 93, 194, 213
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 50, 232
MslI CAYNNNNRTG 3 cut(s) 11, 59, 213
Msp20I TGGCCA 1 cut(s) 227
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 10, 64
NlaIV GGNNCC 1 cut(s) 192
PagI TCATGA 1 cut(s) 60
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 3 cut(s) 11, 59, 213
SaqAI TTAA 2 cut(s) 50, 232
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 195
SetI ASST 1 cut(s) 50
SmiMI CAYNNNNRTG 3 cut(s) 11, 59, 213
Sse9I AATT 2 cut(s) 106, 229
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 50
TasI AATT 2 cut(s) 106, 229
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 50, 232
Tru9I TTAA 2 cut(s) 50, 232
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 4 cut(s) 49, 125, 197, 231
XapI RAATTY 1 cut(s) 106
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.