Rroxscaffold_5G00362400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000344
Physical Location & Seq
Forward (+)
43404726 .. 43422168
17443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00362400.1

Sequence Viewer

Length: 666 bp
ATGAAAGCCGGCAAGCCTCTCCGCTTCTTTCTCATGTCGCCGAGCTTCGCCCATGGGGCGCTCCTCTCGAGCGGCGGTGGGACAAACATCTGTCTCCCCGGTGGGAGGGAGATGAGAGTGGTGAGGTATCTCCGGGATGACCTCTTGGTCAAAAGAAGTGTAGCCTTAGCTAAGAACAGTTTTAGTGTGATGCATCTCCTCCTGGATTTGAGTCTTTGGGCTGGAGTAGACCGAATAGTTACGGTTCTTGCTTTGCACCGGGTTTCGAACGACGTGGTACTCGTTGCCGATCCTAGGCCGAACTCCTCTTCAATCTCTACAAGCGGACCAATCCCGACTCTCTCTCACTCAAACTCGTCACCTCCTCCATTTCGGACGGTGCGAAGGCCCAAGCCATGTCCGCCGTTCTCCTCCGCAAGTAGCTCACCCGCAATGACTCCTATATCTAGCCCATGCTCTCCCCGACGATGCGGTCTAGCTCGAAATCAATTCTCCTGTCCCGTATTCAATGCGAGGAGGTCAAATCGATTTTCAAGAAGCTCGGAACTCCATCTCCGAGCCCGCCTCCGAAATCTTGCCCGACAACCGCCGGCCGGAGCTCCTCTTGTTCATGTTCTAATGCGTCACCTCTCGATTCGCCGAAGCTTCAAGAATAGGCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.22

Weight (kDa)

11.91

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 146, 471
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 228
AclWI GGATC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 591
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 105, 294, 593
AgsI TTSAA 4 cut(s) 312, 508, 534, 649
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 201
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 7 cut(s) 45, 170, 423, 479, 540, 599, 645
AluI AGCT 7 cut(s) 45, 170, 423, 479, 540, 599, 645
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 3 cut(s) 296, 386, 591
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 326, 387
AsuC2I CCSGG 3 cut(s) 99, 134, 260
AsuHPI GGTGA 4 cut(s) 133, 351, 417, 617
AsuII TTCGAA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 326
AvrII CCTAGG 1 cut(s) 293
BanII GRGCYC 2 cut(s) 562, 601
Bbv12I GWGCWC 1 cut(s) 601
BccI CCATC 1 cut(s) 558
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 3 cut(s) 99, 134, 260
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 294, 447, 476
BfoI RGCGCY 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 1 cut(s) 73
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 4 cut(s) 99, 134, 203, 260
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 326, 387
BmrFI CCNGG 4 cut(s) 99, 134, 203, 260
BmsI GCATC 3 cut(s) 180, 202, 458
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 266
BpuMI CCSGG 3 cut(s) 99, 134, 260
Bsa29I ATCGAT 1 cut(s) 526
BsaJI CCNNGG 3 cut(s) 52, 97, 293
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 294, 593
Bse118I RCCGGY 2 cut(s) 8, 589
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 52, 97, 293
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 105, 294, 593
BseMI GCAATG 1 cut(s) 438
BseRI GAGGAG 7 cut(s) 53, 188, 295, 354, 400, 529, 591
BseX3I CGGCCG 1 cut(s) 591
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 3 cut(s) 298, 388, 593
BshVI ATCGAT 1 cut(s) 526
BsiEI CGRYCG 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 6 cut(s) 9, 99, 133, 259, 590, 594
BslFI GGGAC 2 cut(s) 94, 483
BslI CCNNNNNNNGG 3 cut(s) 105, 294, 593
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 94, 483
BsnI GGCC 3 cut(s) 298, 388, 593
BsoBI CYCGRG 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 562, 601
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 52
BspANI GGCC 3 cut(s) 298, 388, 593
BspDI ATCGAT 1 cut(s) 526
BspPI GGATC 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 2 cut(s) 8, 589
BssAI RCCGGY 2 cut(s) 8, 589
BssECI CCNNGG 3 cut(s) 52, 97, 293
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 52, 293
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 179, 244, 379
Bst6I CTCTTC 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 10, 14, 562, 591
BstDEI CTNAG 2 cut(s) 166, 171
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 289
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 2 cut(s) 56, 400
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 4 cut(s) 97, 132, 201, 258
BstZI CGGCCG 1 cut(s) 591
Bsu15I ATCGAT 1 cut(s) 526
BsuRI GGCC 3 cut(s) 298, 388, 593
BsuTUI ATCGAT 1 cut(s) 526
BtgI CCRYGG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 4 cut(s) 10, 14, 562, 591
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 8, 589
Cfr13I GGNCC 2 cut(s) 326, 387
ClaI ATCGAT 1 cut(s) 526
CseI GACGC 1 cut(s) 611
Csp6I GTAC 1 cut(s) 278
CviAII CATG 5 cut(s) 34, 53, 396, 453, 611
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 2 cut(s) 166, 171
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DrdI GACNNNNNNGTC 2 cut(s) 146, 471
DseDI GACNNNNNNGTC 2 cut(s) 146, 471
EaeI YGGCCR 1 cut(s) 591
EagI CGGCCG 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 599
EclXI CGGCCG 1 cut(s) 591
Eco130I CCWWGG 2 cut(s) 52, 293
Eco24I GRGCYC 2 cut(s) 562, 601
Eco47I GGWCC 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 52, 293
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 562, 601
ErhI CCWWGG 2 cut(s) 52, 293
FaeI CATG 5 cut(s) 37, 56, 399, 456, 614
FaiI YATR 6 cut(s) 35, 54, 397, 443, 454, 612
FaqI GGGAC 2 cut(s) 94, 483
FatI CATG 5 cut(s) 33, 52, 395, 452, 610
FauI CCCGC 2 cut(s) 436, 569
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 2 cut(s) 562, 601
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 3 cut(s) 294, 447, 476
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 3 cut(s) 298, 388, 593
HapII CCGG 6 cut(s) 9, 99, 133, 259, 590, 594
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 61
Hin1II CATG 5 cut(s) 37, 56, 399, 456, 614
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 643
HinfI GANTC 4 cut(s) 211, 337, 436, 634
HpaII CCGG 6 cut(s) 9, 99, 133, 259, 590, 594
HphI GGTGA 4 cut(s) 133, 351, 417, 617
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 4 cut(s) 375, 544, 557, 569
Hpy188III TCNNGA 6 cut(s) 67, 334, 534, 631, 649, 663
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 275, 468
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 3 cut(s) 179, 244, 379
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 193, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 400
HpyF3I CTNAG 2 cut(s) 166, 171
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 5 cut(s) 37, 56, 399, 456, 614
HspAI GCGC 1 cut(s) 59
KroI GCCGGC 2 cut(s) 8, 589
KroNI GCCGGC 2 cut(s) 10, 591
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 3 cut(s) 66, 596, 604
LweI GCATC 3 cut(s) 180, 202, 458
MaeI CTAG 3 cut(s) 294, 447, 476
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 238, 357, 623
MalI GATC 1 cut(s) 291
MbiI CCGCTC 1 cut(s) 72
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 562, 601
MluCI AATT 1 cut(s) 488
MlyI GAGTC 3 cut(s) 220, 331, 430
Mph1103I ATGCAT 1 cut(s) 195
MroNI GCCGGC 2 cut(s) 8, 589
MspI CCGG 6 cut(s) 9, 99, 133, 259, 590, 594
MspR9I CCNGG 4 cut(s) 99, 134, 203, 260
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 56, 400
NaeI GCCGGC 2 cut(s) 10, 591
NciI CCSGG 3 cut(s) 99, 134, 260
NcoI CCATGG 1 cut(s) 52
NdeII GATC 1 cut(s) 289
NgoMIV GCCGGC 2 cut(s) 8, 589
NlaIII CATG 5 cut(s) 37, 56, 399, 456, 614
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 357, 623
NsiI ATGCAT 1 cut(s) 195
NspV TTCGAA 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 67
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 379
PdiI GCCGGC 2 cut(s) 10, 591
PfeI GAWTC 1 cut(s) 634
PfoI TCCNGGA 2 cut(s) 132, 201
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 3 cut(s) 219, 331, 430
PpsI GAGTC 3 cut(s) 219, 331, 430
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 2 cut(s) 326, 387
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacI GAGCTC 1 cut(s) 601
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 326, 387
SchI GAGTC 3 cut(s) 220, 331, 430
ScrFI CCNGG 4 cut(s) 99, 134, 203, 260
SduI GDGCHC 2 cut(s) 562, 601
SfaNI GCATC 3 cut(s) 180, 202, 458
Sfr274I CTCGAG 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 1 cut(s) 488
SspMI CTAG 3 cut(s) 294, 447, 476
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 4 cut(s) 97, 132, 201, 258
StyI CCWWGG 2 cut(s) 52, 293
TaaI ACNGT 3 cut(s) 179, 244, 379
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 68, 266, 481, 526, 632
TaqII GACCGA 1 cut(s) 246
TasI AATT 1 cut(s) 488
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 634
TseFI GTSAC 2 cut(s) 357, 623
Tsp45I GTSAC 2 cut(s) 357, 623
TspDTI ATGAA 2 cut(s) 17, 599
VpaK11BI GGWCC 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 67
XmaJI CCTAGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 3 cut(s) 294, 447, 476
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.