Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

50550434 .. 50550790

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATGAGGACACTCATGGAGTCTTTGAACAACGGGAACGAGGCCACGGCACAGGAGGCACTCGAGTTGTTCATCGAATTGGCTGGGACCGAGCCAAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGCTCTATGCTGCGTGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGACACTTGGCCATAGAGTTTGTAATCACTCTAGCCGAGGCCAGCGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCAGTTTATTAGTAGGTTGCTTGCCATTTTGATGAAGATGGTTTTGGATATTGAGGATGATCCCTCATGGCATACTGCGGAGACTGAAGATGAGGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

118

Amino Acids

13.3

Weight (kDa)

4.49

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	53 - 117	1.5e-14	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	254, 332
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	2 cut(s)	62, 232
AoxI	GGCC	3 cut(s)	42, 186, 216
ApeKI	GCWGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	87, 174
AsuC2I	CCSGG	2 cut(s)	233, 234
AvaI	CYCGRG	2 cut(s)	62, 232
AvaII	GGWCC	2 cut(s)	87, 174
AxyI	CCTNAGG	1 cut(s)	104
BalI	TGGCCA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	286, 344
BceAI	ACGGC	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	233, 234
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	140, 254
BlsI	GCNGC	2 cut(s)	141, 255
Bme1390I	CCNGG	2 cut(s)	233, 234
Bme18I	GGWCC	2 cut(s)	87, 174
BmeT110I	CYCGRG	2 cut(s)	62, 232
BmgT120I	GGNCC	2 cut(s)	87, 174
BmiI	GGNNCC	3 cut(s)	88, 101, 175
BmrFI	CCNGG	2 cut(s)	233, 234
BpuMI	CCSGG	2 cut(s)	233, 234
BsaJI	CCNNGG	7 cut(s)	45, 95, 162, 213, 231, 232, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	104
BseDI	CCNNGG	7 cut(s)	45, 95, 162, 213, 231, 232, 233
BseGI	GGATG	3 cut(s)	243, 316, 355
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	118, 147
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	3 cut(s)	44, 188, 218
BsiHKCI	CYCGRG	2 cut(s)	62, 232
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	100, 187
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	100, 187
BsnI	GGCC	3 cut(s)	44, 188, 218
BsoBI	CYCGRG	2 cut(s)	62, 232
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	254, 332
BspANI	GGCC	3 cut(s)	44, 188, 218
BspCNI	CTCAG	2 cut(s)	117, 148
BspLI	GGNNCC	3 cut(s)	88, 101, 175
BspPI	GGATC	1 cut(s)	308
BssECI	CCNNGG	7 cut(s)	45, 95, 162, 213, 231, 232, 233
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	95, 162
BstC8I	GCNNGC	4 cut(s)	220, 224, 228, 276
BstDEI	CTNAG	2 cut(s)	104, 156
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	243, 316, 355
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	231, 232
BstV1I	GCAGC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	44, 188, 218
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	243, 316, 355
Cac8I	GCNNGC	4 cut(s)	220, 224, 228, 276
Cfr13I	GGNCC	2 cut(s)	87, 174
Cfr9I	CCCGGG	1 cut(s)	232
CviAII	CATG	2 cut(s)	16, 321
CviJI	RGCY	9 cut(s)	44, 83, 94, 132, 155, 188, 212, 218, 230
CviKI_1	RGCY	9 cut(s)	44, 83, 94, 132, 155, 188, 212, 218, 230
DdeI	CTNAG	2 cut(s)	104, 156
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	95, 162
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	87, 174
Eco57I	CTGAAG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	62, 232
EcoT14I	CCWWGG	2 cut(s)	95, 162
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	95, 162
FaeI	CATG	2 cut(s)	19, 324
FaiI	YATR	5 cut(s)	17, 137, 191, 322, 327
FaqI	GGGAC	2 cut(s)	100, 187
FatI	CATG	2 cut(s)	15, 320
Fnu4HI	GCNGC	2 cut(s)	140, 254
FokI	GGATG	2 cut(s)	250, 323
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	140, 254
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	140, 254
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	44, 188, 218
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	2 cut(s)	19, 324
HinfI	GANTC	2 cut(s)	20, 158
HpaII	CCGG	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	104, 156
Hsp92II	CATG	2 cut(s)	19, 324
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	6 cut(s)	38, 69, 91, 190, 232, 246
Lsp1109I	GCAGC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	209
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	179, 301, 353
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	29, 167
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	233, 234
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	233, 234
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	19, 324
NlaIV	GGNNCC	3 cut(s)	88, 101, 175
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	141, 255
PleI	GAGTC	2 cut(s)	28, 166
PpsI	GAGTC	2 cut(s)	28, 166
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	88, 101, 175
PspPI	GGNCC	2 cut(s)	87, 174
PspXI	VCTCGAGB	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	2 cut(s)	140, 254
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	87, 174
SchI	GAGTC	2 cut(s)	29, 167
ScrFI	CCNGG	2 cut(s)	233, 234
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	4 cut(s)	101, 126, 157, 272
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	2 cut(s)	87, 174
SlaI	CTCGAG	1 cut(s)	62
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	254, 332
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	231, 232
StyI	CCWWGG	2 cut(s)	95, 162
TaqI	TCGA	2 cut(s)	63, 75
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	77
TauI	GCSGC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	61, 302
TspMI	CCCGGG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	87, 174
XhoI	CTCGAG	1 cut(s)	62
XmaI	CCCGGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.