Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

17043636 .. 17044139

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTGCATGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGACACTTGGCCATAGAGTTTGTAATCACTCTAGCCGAGGCCAGCGAGCGAGCCCCGGGGATGATGAGGAAGTTGCCGCTGTTTATTAGTAGGTTGTTTGCCATTTTGATGAAGATGGTTTTGGATATTGAGGATGATCCCTCATGGCATACCGCGGAGACTGAAGATGAGGATGCTGGTGAGAGTGGTAATTACAGTGTTGGGCAGGAGTGTTTGGATAGGCTTGCCATTTCCTTGGGTGGGAATACCATTGTTCCCGTCGCGTCCGAGCAGTTGCTTGCCTATTTGGCTGCCTCCGAGTGGCAGAAACACCATGCAGCATTGATTGCCCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

126

Amino Acids

13.79

Weight (kDa)

4.55

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Importin_rep_4	PF18808	9 - 100	2.4e-23	Importin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	197, 305
AciI	CCGC	3 cut(s)	119, 195, 197
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	2 cut(s)	36, 225
AfiI	CCNNNNNNNGG	2 cut(s)	282, 342
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	51, 81
ApeKI	GCWGC	3 cut(s)	4, 332, 359
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	2 cut(s)	98, 99
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	319, 371
BccI	CCATC	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	98, 99
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	4 cut(s)	5, 119, 333, 360
BlsI	GCNGC	4 cut(s)	6, 120, 334, 361
Bme1390I	CCNGG	2 cut(s)	98, 99
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	98, 99
BmsI	GCATC	1 cut(s)	205
BpuMI	CCSGG	2 cut(s)	98, 99
BsaJI	CCNNGG	7 cut(s)	27, 78, 96, 97, 98, 195, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 342
BseDI	CCNNGG	7 cut(s)	27, 78, 96, 97, 98, 195, 276
BseGI	GGATG	3 cut(s)	108, 181, 220
BseLI	CCNNNNNNNGG	2 cut(s)	282, 342
BseMII	CTCAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	319, 371
Bsh1236I	CGCG	2 cut(s)	197, 305
BshFI	GGCC	2 cut(s)	53, 83
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	282, 342
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	53, 83
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	3 cut(s)	119, 195, 197
BspANI	GGCC	2 cut(s)	53, 83
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	2 cut(s)	197, 305
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	173
BssECI	CCNNGG	7 cut(s)	27, 78, 96, 97, 98, 195, 276
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	27, 276
Bst4CI	ACNGT	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	5 cut(s)	85, 89, 93, 267, 321
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	108, 181, 220
BstFNI	CGCG	2 cut(s)	197, 305
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 368
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	96, 97
BstUI	CGCG	2 cut(s)	197, 305
BstV1I	GCAGC	2 cut(s)	319, 371
BstXI	CCANNNNNNTGG	2 cut(s)	49, 277
BsuRI	GGCC	2 cut(s)	53, 83
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	108, 181, 220
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	5 cut(s)	85, 89, 93, 267, 321
Cfr13I	GGNCC	1 cut(s)	39
Cfr42I	CCGCGG	1 cut(s)	198
Cfr9I	CCCGGG	1 cut(s)	97
CseI	GACGC	1 cut(s)	294
CviAII	CATG	3 cut(s)	8, 186, 356
CviJI	RGCY	7 cut(s)	20, 53, 77, 83, 95, 265, 332
CviKI_1	RGCY	7 cut(s)	20, 53, 77, 83, 95, 265, 332
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	27, 276
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	36, 225
Eco88I	CYCGRG	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	27, 276
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	27, 276
FaeI	CATG	3 cut(s)	11, 189, 359
FaiI	YATR	6 cut(s)	9, 56, 187, 192, 357, 379
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	7, 185, 355
Fnu4HI	GCNGC	4 cut(s)	5, 119, 333, 360
FokI	GGATG	3 cut(s)	115, 188, 227
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	5, 119, 333, 360
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	4 cut(s)	5, 119, 333, 360
HaeIII	GGCC	2 cut(s)	53, 83
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	11, 189, 359
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	310, 340
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	3 cut(s)	7, 359, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 368
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	11, 189, 359
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	55, 97, 111, 204, 233
Lsp1109I	GCAGC	2 cut(s)	319, 371
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	44, 166, 218
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	6 cut(s)	73, 102, 166, 193, 205, 346
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	2 cut(s)	121, 197
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	98, 99
MvnI	CGCG	2 cut(s)	197, 305
MwoI	GCNNNNNNNGC	2 cut(s)	329, 368
NciI	CCSGG	2 cut(s)	98, 99
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	11, 189, 359
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	103
NspI	RCATGY	1 cut(s)	11
PkrI	GCNGC	4 cut(s)	6, 120, 334, 361
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	198
SatI	GCNGC	4 cut(s)	5, 119, 333, 360
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	98, 99
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	2 cut(s)	22, 137
SfaNI	GCATC	1 cut(s)	205
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	39
SmaI	CCCGGG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	119, 195, 197
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	96, 97
StyI	CCWWGG	2 cut(s)	27, 276
TaaI	ACNGT	1 cut(s)	239
TasI	AATT	1 cut(s)	232
TauI	GCSGC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	3 cut(s)	4, 332, 359
TspDTI	ATGAA	1 cut(s)	167
TspMI	CCCGGG	1 cut(s)	97
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.