Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006889.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

135521 .. 136433

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006889.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggttttgaactcccttgaacatccacacattcgggtaaggtggtcagctattaatgcagttggccagttgtctacttatttggcctcagacctgcaagttcaatatcatcaacaggtgttttctgcactgaatgccactatatatggtttgcagaacagtcgtctacgggcatatgctgcttcagcactgcaaaaattcattgagaaatgtgctagggatatcttgacaccttatttggatgaagtggtttcccaattggttgtacttttgcagagtgaaatacaaatggtgcatgtagaagcagtgactgctttggcatcagctgttgtttcatttccggtatttttctctataatgtgttcttctagttcaatgtttgtgttgtggatgattcaattggatggtaatgggatctgtaggaccaattccaaaaatactatgaagatgtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

7.76

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccI	GTMKAC	2 cut(s)	74, 166
AclWI	GGATC	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	10, 20, 104, 375, 398
AluBI	AGCT	2 cut(s)	50, 326
AluI	AGCT	2 cut(s)	50, 326
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	64, 84
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BfaI	CTAG	2 cut(s)	216, 369
BfmI	CTRYAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	4 cut(s)	22, 247, 396, 409
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	66, 86
BsiSI	CCGG	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	66, 86
Bsp143I	GATC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	66, 86
BspCNI	CTCAG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	3 cut(s)	134, 179, 311
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	4 cut(s)	22, 247, 396, 409
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 134, 179, 185, 311
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	66, 86
BtsCI	GGATG	4 cut(s)	22, 247, 396, 409
BtsI	GCAGTG	2 cut(s)	188, 312
BtsIMutI	CAGTG	3 cut(s)	128, 188, 312
BveI	ACCTGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	296, 453
CviJI	RGCY	4 cut(s)	50, 66, 86, 326
CviKI_1	RGCY	4 cut(s)	50, 66, 86, 326
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	2 cut(s)	299, 456
FaiI	YATR	9 cut(s)	143, 145, 147, 175, 177, 297, 356, 443, 454
FatI	CATG	2 cut(s)	295, 452
FauNDI	CATATG	1 cut(s)	175
FblI	GTMKAC	2 cut(s)	74, 166
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	4 cut(s)	9, 254, 403, 416
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	216, 369
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	66, 86
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	2 cut(s)	299, 456
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	75, 167
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	226, 453
Hpy8I	GTNNAC	2 cut(s)	75, 167
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	7 cut(s)	59, 97, 128, 154, 193, 274, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 134, 179, 185, 311
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	299, 456
Kzo9I	GATC	1 cut(s)	414
LpnPI	CCDG	4 cut(s)	80, 101, 107, 354
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	216, 369
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	357
MfeI	CAATTG	2 cut(s)	257, 398
MflI	RGATCY	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	4 cut(s)	197, 257, 398, 427
MluNI	TGGCCA	1 cut(s)	66
MnlI	CCTC	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	341
MunI	CAATTG	2 cut(s)	257, 398
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	5 cut(s)	56, 134, 179, 185, 311
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	2 cut(s)	299, 456
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	1 cut(s)	452
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	181
PshBI	ATTAAT	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	423
SetI	ASST	6 cut(s)	44, 52, 96, 120, 235, 328
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	423
Sse9I	AATT	4 cut(s)	197, 257, 398, 427
SspMI	CTAG	2 cut(s)	216, 369
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	4 cut(s)	197, 257, 398, 427
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	135, 195, 312
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	190, 258, 324
TspRI	CASTG	3 cut(s)	135, 195, 312
VpaK11BI	GGWCC	1 cut(s)	423
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	2 cut(s)	74, 166
XspI	CTAG	2 cut(s)	216, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.