Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

14313097 .. 14314679

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCGAGTTGACTCGGCTTGAGCAAGTCGCAACGATTCTTGGCCCCGACCCCTTCGCCTCTTTCAAAACCCTAATCTCCTCCCTCTTCTCCTCCAATTCCGAGCGGCGATCCCGGGCCGAGCTTGTCTTCAACATCCGCAAAAAGCCAAAAACTAAGATCCCGACTCGCTCTCCCTCACACTCGCTCACCTCCTCCGATTCTCGCCCTCACCGGACTCCCCATTTATCTACGCCGTCCTCCTCCGCAATCAAATCCGCCTCGGCGAAGCCTCTCGAGAACACACGTGAATCGATGATGATAAATCTAAGGCTTGTTTCTCAAGAACATTCGCAGTTGCCGCCTGAGAGCTTTCGCCTTCGCCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

123

Amino Acids

13.75

Weight (kDa)

11.14

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	5 cut(s)	106, 139, 246, 258, 341
AclWI	GGATC	2 cut(s)	105, 154
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	67, 133
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	124, 351
AluI	AGCT	2 cut(s)	124, 351
AlwI	GGATC	2 cut(s)	105, 154
Ama87I	CYCGRG	2 cut(s)	114, 275
AoxI	GGCC	3 cut(s)	3, 43, 117
AspS9I	GGNCC	2 cut(s)	44, 117
AsuC2I	CCSGG	2 cut(s)	115, 116
AsuHPI	GGTGA	2 cut(s)	181, 203
AvaI	CYCGRG	2 cut(s)	114, 275
BbrPI	CACGTG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	2 cut(s)	115, 116
BisI	GCNGC	2 cut(s)	107, 341
BlsI	GCNGC	2 cut(s)	108, 342
Bme1390I	CCNGG	3 cut(s)	115, 116, 365
BmeT110I	CYCGRG	2 cut(s)	114, 275
BmgT120I	GGNCC	2 cut(s)	44, 117
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	115, 116, 365
BpiI	GAAGAC	1 cut(s)	121
BpuEI	CTTGAG	2 cut(s)	41, 306
BpuMI	CCSGG	2 cut(s)	115, 116
Bsa29I	ATCGAT	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	114, 261
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	365
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	114, 261
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	336
BseRI	GAGGAG	4 cut(s)	70, 82, 184, 232
BshFI	GGCC	3 cut(s)	5, 45, 119
BshVI	ATCGAT	1 cut(s)	293
BsiHKCI	CYCGRG	2 cut(s)	114, 275
BsiSI	CCGG	2 cut(s)	115, 214
BslI	CCNNNNNNNGG	1 cut(s)	364
BsnI	GGCC	3 cut(s)	5, 45, 119
BsoBI	CYCGRG	2 cut(s)	114, 275
Bsp143I	GATC	2 cut(s)	110, 159
BspACI	CCGC	5 cut(s)	106, 139, 246, 258, 341
BspANI	GGCC	3 cut(s)	5, 45, 119
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	105, 154
BsrBI	CCGCTC	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	114, 261
BssMI	GATC	2 cut(s)	110, 159
Bst2UI	CCWGG	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	156, 308, 345
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	113, 162
BstMBI	GATC	2 cut(s)	110, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	113, 114, 363
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	5, 45, 119
BsuTUI	ATCGAT	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	44, 117
Cfr9I	CCCGGG	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	293
DdeI	CTNAG	3 cut(s)	156, 308, 345
DpnI	GATC	2 cut(s)	112, 161
DpnII	GATC	2 cut(s)	110, 159
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	247
Eco72I	CACGTG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	114, 275
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	107, 341
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	107, 341
GluI	GCNGC	2 cut(s)	107, 341
HaeIII	GGCC	3 cut(s)	5, 45, 119
HapII	CCGG	2 cut(s)	115, 214
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	6 cut(s)	13, 37, 166, 200, 217, 290
HpaII	CCGG	2 cut(s)	115, 214
HphI	GGTGA	2 cut(s)	181, 203
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	103, 199
Hpy188III	TCNNGA	4 cut(s)	163, 275, 277, 323
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	64, 368
HpyCH4IV	ACGT	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	3 cut(s)	156, 308, 345
HpySE526I	ACGT	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	110, 159
LpnPI	CCDG	4 cut(s)	128, 227, 350, 357
MaeII	ACGT	1 cut(s)	286
MalI	GATC	2 cut(s)	112, 161
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	2 cut(s)	110, 159
MboII	GAAGA	2 cut(s)	79, 121
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	3 cut(s)	7, 160, 211
MspI	CCGG	2 cut(s)	115, 214
MspR9I	CCNGG	3 cut(s)	115, 116, 365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	2 cut(s)	115, 116
NdeII	GATC	2 cut(s)	110, 159
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	3 cut(s)	31, 145, 242
PaeR7I	CTCGAG	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	37, 200, 290
PkrI	GCNGC	2 cut(s)	108, 342
PleI	GAGTC	3 cut(s)	7, 160, 211
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	3 cut(s)	7, 160, 211
Ppu21I	YACGTR	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	44, 117
PsuI	RGATCY	1 cut(s)	159
SatI	GCNGC	2 cut(s)	107, 341
Sau3AI	GATC	2 cut(s)	110, 159
Sau96I	GGNCC	2 cut(s)	44, 117
SchI	GAGTC	3 cut(s)	7, 160, 211
ScrFI	CCNGG	3 cut(s)	115, 116, 365
SetI	ASST	4 cut(s)	126, 194, 289, 353
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	116
SmlI	CTYRAG	3 cut(s)	20, 275, 321
SmoI	CTYRAG	3 cut(s)	20, 275, 321
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	5 cut(s)	106, 139, 246, 258, 341
StyD4I	CCNGG	3 cut(s)	113, 114, 363
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	276, 293
TasI	AATT	1 cut(s)	97
TauI	GCSGC	2 cut(s)	109, 343
TfiI	GAWTC	3 cut(s)	37, 200, 290
TspMI	CCCGGG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	275
XmaI	CCCGGG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.