Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

68817688 .. 68820043

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCCGCCATTCTCCTCCGCAAGCAGCTCACCCGCGACGACTCCTTTCTCTGGCCCAAGCTCTCTCCGACGAGGCAGTCTAACGCGCGACGATCACTTGTCCTCCTCCATCTCCCTAGCCTCGGCGGCCTCGGATCTCTGCTTCAATCCATTGTTCAACGCCACAAGCGAGCCCTGCACGAAGCCTCTGAACTGCTCGATCTTCTCCCTGAGCTCCAAGAGAGGGGCTCGCATGCCCACCACGGCGGAGTCGACGTCGACGAGCTTGGTGGTGAGGTTGACGAAGTTAGCGTAGTCGTGGTTGATGAGGTCGATGAGGTTGTGGTTGAGGGAGGCGAGATAGGACTGGAGCTCGGATCGGAGGGTGTCGAAAGGGACGAAGGTTCGGAGGTCGGAGATGTCCTGGGAGAGGAAGAGCGCGGGCTTGAACCAGAGGAGGTTGGATTCGAGGGGGTCGGAGAAGAAGACGGTGTTGGATCTGTGCGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

163

Amino Acids

17.56

Weight (kDa)

4.43

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	252, 258
AccII	CGCG	4 cut(s)	36, 86, 88, 420
AciI	CCGC	7 cut(s)	6, 19, 34, 126, 246, 420, 484
AclWI	GGATC	3 cut(s)	142, 364, 484
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	51, 122, 223, 409
AgsI	TTSAA	3 cut(s)	146, 158, 428
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	5 cut(s)	28, 61, 214, 265, 352
AluI	AGCT	5 cut(s)	28, 61, 214, 265, 352
Alw21I	GWGCWC	2 cut(s)	216, 354
AlwI	GGATC	3 cut(s)	142, 364, 484
AoxI	GGCC	2 cut(s)	53, 127
ApeKI	GCWGC	1 cut(s)	25
AspLEI	GCGC	2 cut(s)	88, 420
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	22, 284
BanII	GRGCYC	4 cut(s)	175, 216, 230, 354
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	2 cut(s)	216, 354
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	26, 127
BlsI	GCNGC	2 cut(s)	27, 128
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	121, 130, 241, 403
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 240, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 122, 223, 409
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	4 cut(s)	121, 130, 241, 403
BseLI	CCNNNNNNNGG	4 cut(s)	51, 122, 223, 409
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	3 cut(s)	5, 95, 449
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	4 cut(s)	36, 86, 88, 420
BshFI	GGCC	2 cut(s)	55, 129
BsiHKAI	GWGCWC	2 cut(s)	216, 354
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	4 cut(s)	51, 122, 223, 409
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	55, 129
Bsp1286I	GDGCHC	4 cut(s)	175, 216, 230, 354
Bsp143I	GATC	5 cut(s)	92, 134, 199, 356, 476
BspACI	CCGC	7 cut(s)	6, 19, 34, 126, 246, 420, 484
BspANI	GGCC	2 cut(s)	55, 129
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	4 cut(s)	36, 86, 88, 420
BspPI	GGATC	3 cut(s)	142, 364, 484
BspQI	GCTCTTC	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	4 cut(s)	121, 130, 241, 403
BssMI	GATC	5 cut(s)	92, 134, 199, 356, 476
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	5 cut(s)	23, 171, 230, 234, 422
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstFNI	CGCG	4 cut(s)	36, 86, 88, 420
BstHHI	GCGC	2 cut(s)	88, 420
BstKTI	GATC	5 cut(s)	95, 137, 202, 359, 479
BstMBI	GATC	5 cut(s)	92, 134, 199, 356, 476
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 175
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	402
BstUI	CGCG	4 cut(s)	36, 86, 88, 420
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	134, 476
BstYI	RGATCY	2 cut(s)	134, 476
BsuRI	GGCC	2 cut(s)	55, 129
BtgI	CCRYGG	1 cut(s)	241
Cac8I	GCNNGC	5 cut(s)	23, 171, 230, 234, 422
CfoI	GCGC	2 cut(s)	88, 420
Cfr13I	GGNCC	1 cut(s)	54
CviAII	CATG	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	5 cut(s)	94, 136, 201, 358, 478
DpnII	GATC	5 cut(s)	92, 134, 199, 356, 476
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	214, 352
Eco24I	GRGCYC	4 cut(s)	175, 216, 230, 354
Eco53kI	GAGCTC	2 cut(s)	214, 352
EcoICRI	GAGCTC	2 cut(s)	214, 352
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	4 cut(s)	175, 216, 230, 354
FaeI	CATG	1 cut(s)	236
FaiI	YATR	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	232
FauI	CCCGC	2 cut(s)	41, 413
FblI	GTMKAC	2 cut(s)	252, 258
Fnu4HI	GCNGC	2 cut(s)	26, 127
FriOI	GRGCYC	4 cut(s)	175, 216, 230, 354
Fsp4HI	GCNGC	2 cut(s)	26, 127
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	87, 419
GluI	GCNGC	2 cut(s)	26, 127
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	55, 129
HhaI	GCGC	2 cut(s)	88, 420
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	86, 418
HinP1I	GCGC	2 cut(s)	86, 418
HincII	GTYRAC	3 cut(s)	253, 259, 280
HindII	GTYRAC	3 cut(s)	253, 259, 280
HinfI	GANTC	3 cut(s)	41, 249, 444
HphI	GGTGA	2 cut(s)	22, 284
Hpy166II	GTNNAC	3 cut(s)	253, 259, 280
Hpy188I	TCNGA	8 cut(s)	69, 134, 190, 356, 361, 388, 395, 458
Hpy8I	GTNNAC	3 cut(s)	253, 259, 280
Hpy99I	CGWCG	6 cut(s)	41, 73, 93, 257, 260, 263
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 175
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	2 cut(s)	86, 418
Kzo9I	GATC	5 cut(s)	92, 134, 199, 356, 476
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	219, 349
LpnPI	CCDG	7 cut(s)	37, 188, 222, 332, 389, 416, 444
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	255
MalI	GATC	5 cut(s)	94, 136, 201, 358, 478
MboI	GATC	5 cut(s)	92, 134, 199, 356, 476
MboII	GAAGA	4 cut(s)	194, 425, 473, 476
MflI	RGATCY	2 cut(s)	134, 476
MhlI	GDGCHC	4 cut(s)	175, 216, 230, 354
MlyI	GAGTC	2 cut(s)	35, 258
MmeI	TCCRAC	5 cut(s)	92, 373, 421, 436, 454
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	4 cut(s)	36, 86, 88, 420
MwoI	GCNNNNNNNGC	2 cut(s)	126, 175
NdeII	GATC	5 cut(s)	92, 134, 199, 356, 476
NlaIII	CATG	1 cut(s)	236
NmeAIII	GCCGAG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	5 cut(s)	166, 249, 258, 288, 375
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	27, 128
PleI	GAGTC	2 cut(s)	35, 257
PpsI	GAGTC	2 cut(s)	35, 257
Psp124BI	GAGCTC	2 cut(s)	216, 354
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	2 cut(s)	134, 476
SacI	GAGCTC	2 cut(s)	216, 354
SalI	GTCGAC	2 cut(s)	251, 257
SapI	GCTCTTC	1 cut(s)	408
SatI	GCNGC	2 cut(s)	26, 127
Sau3AI	GATC	5 cut(s)	92, 134, 199, 356, 476
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	35, 258
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	4 cut(s)	175, 216, 230, 354
SgrDI	CGTCGACG	1 cut(s)	257
SphI	GCATGC	1 cut(s)	236
SsiI	CCGC	7 cut(s)	6, 19, 34, 126, 246, 420, 484
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	2 cut(s)	216, 354
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	6 cut(s)	198, 252, 258, 312, 369, 447
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	407
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	252, 258
XspI	CTAG	1 cut(s)	117
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.