Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

48916381 .. 48920734

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAATGGTCTTGAACTCGTGTCAAAATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCGATTGGACAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTTCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGGATCTTCTTTTTGTAGTTTTTGTTTTGCACAGAAGTTCTGGGAGATACACTTGCAACTCATTTAGACAAATGCCTTGTGTTTATATTGGGTGCATGAAGTCAGGCGAAGTTTTCTCTGAGCCGAGTCAAAAGTGGTATGAACCAGAATGGTGGAAGGTGGGTGATAAAAAATCATATGTTCGCCATGCTTCAGGTGAGATATATTTTCGCCATGCTTCATGTGAGATGTATGACATTTCTCAAGGTCTGGCCAATTTTGTTCGAATAAATAGAGATATTCTCCGTACCTATGCCCATGATGATGAGCCATTTGTGCTATGTATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

168

Amino Acids

19.44

Weight (kDa)

6.99

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	16, 110
AluBI	AGCT	2 cut(s)	56, 140
AluI	AGCT	2 cut(s)	56, 140
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	91, 426
ApaI	GGGCCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	53, 140, 143
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	91, 92
AsuHPI	GGTGA	2 cut(s)	350, 383
AsuII	TTCGAA	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	95
BauI	CACGAG	3 cut(s)	19, 39, 168
BbvI	GCAGC	3 cut(s)	65, 127, 130
BfuAI	ACCTGC	1 cut(s)	108
BisI	GCNGC	3 cut(s)	54, 141, 144
BlsI	GCNGC	3 cut(s)	55, 142, 145
BmgT120I	GGNCC	2 cut(s)	91, 92
BmiI	GGNNCC	1 cut(s)	93
BoxI	GACNNNNGTC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bpu14I	TTCGAA	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	34, 157
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	65, 127, 130
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	93, 428
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	2 cut(s)	93, 428
Bsp119I	TTCGAA	1 cut(s)	439
Bsp120I	GGGCCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	2 cut(s)	93, 428
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	3 cut(s)	19, 39, 168
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	3 cut(s)	19, 39, 168
Bst4CI	ACNGT	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	34, 157
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 140, 490
BstPAI	GACNNNNGTC	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	65, 127, 130
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	93, 428
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	34, 157
BveI	ACCTGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	91, 92
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	6 cut(s)	148, 271, 362, 389, 396, 473
CviJI	RGCY	6 cut(s)	56, 93, 140, 298, 428, 484
CviKI_1	RGCY	6 cut(s)	56, 93, 140, 298, 428, 484
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	151, 274, 365, 392, 399, 476
FatI	CATG	6 cut(s)	147, 270, 361, 388, 395, 472
FauNDI	CATATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	54, 141, 144
FokI	GGATG	2 cut(s)	21, 164
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	54, 141, 144
GluI	GCNGC	3 cut(s)	54, 141, 144
HaeIII	GGCC	2 cut(s)	93, 428
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	6 cut(s)	151, 274, 365, 392, 399, 476
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	350, 383
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	162, 295
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	103, 175, 205, 231, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 140, 490
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	6 cut(s)	151, 274, 365, 392, 399, 476
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	108, 113, 144, 161, 201, 264, 333, 354, 410
Lsp1109I	GCAGC	3 cut(s)	65, 127, 130
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	119, 173
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	1 cut(s)	430
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	3 cut(s)	42, 48, 177
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	39, 477
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	62, 140, 490
NcoI	CCATGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	6 cut(s)	151, 274, 365, 392, 399, 476
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	55, 142, 145
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	93
PspOMI	GGGCCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	91, 92
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	2 cut(s)	39, 477
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	3 cut(s)	54, 141, 144
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	91, 92
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	50, 58, 102, 142, 336, 373, 424, 467
SfuI	TTCGAA	1 cut(s)	439
SmiMI	CAYNNNNRTG	2 cut(s)	39, 477
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	439
TasI	AATT	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseI	GCWGC	3 cut(s)	53, 140, 143
TspDTI	ATGAA	3 cut(s)	287, 330, 384
TspGWI	ACGGA	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.