Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

44999896 .. 45006635

Gene Structure 6740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGATTCAAGTTACCTTAGTTTATTCCTTTTAATTTTGCTCCAGGTAATGATAAAAAATTTGGAGCAAGTGGTGGCAATGGTCTTGAACTCGTTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCAATTGGGCAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGATGTTCTGGGAGCTACACTTGCAACTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

5.32

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	22 - 83	7e-06	HEAT repeats
HEAT	PF02985	26 - 52	6.4e-06	HEAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	9, 88, 98, 182
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	3 cut(s)	128, 212, 262
AluI	AGCT	3 cut(s)	128, 212, 262
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	163
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	3 cut(s)	125, 212, 215
ApoI	RAATTY	1 cut(s)	58
AseI	ATTAAT	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	163, 164
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	2 cut(s)	111, 240
BbvI	GCAGC	3 cut(s)	137, 199, 202
BciT130I	CCWGG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	180
BisI	GCNGC	3 cut(s)	126, 213, 216
BlsI	GCNGC	3 cut(s)	127, 214, 217
Bme1390I	CCNGG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	163, 164
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	106, 229
BseJI	GATNNNNATC	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	137, 199, 202
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	100
BssSI	CACGAG	2 cut(s)	111, 240
BssT1I	CCWWGG	1 cut(s)	219
Bst2BI	CACGAG	2 cut(s)	111, 240
Bst2UI	CCWGG	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	106, 229
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 212, 268
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	137, 199, 202
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	106, 229
BveI	ACCTGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	163, 164
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	4 cut(s)	128, 165, 212, 262
CviKI_1	RGCY	4 cut(s)	128, 165, 212, 262
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	223
FaiI	YATR	1 cut(s)	221
FatI	CATG	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	126, 213, 216
FokI	GGATG	2 cut(s)	93, 236
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	126, 213, 216
GluI	GCNGC	3 cut(s)	126, 213, 216
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	85, 98
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	137, 175, 247, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 212, 268
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	45, 64, 259
LpnPI	CCDG	6 cut(s)	29, 56, 180, 185, 216, 241
Lsp1109I	GCAGC	3 cut(s)	137, 199, 202
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	33, 58, 138
MnlI	CCTC	3 cut(s)	114, 120, 249
MseI	TTAA	2 cut(s)	32, 132
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	134, 212, 268
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	127, 214, 217
PshBI	ATTAAT	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	165
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	163, 164
PsuI	RGATCY	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	32, 132
SatI	GCNGC	3 cut(s)	126, 213, 216
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	2 cut(s)	163, 164
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	18, 48, 122, 130, 174, 214, 264
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	33, 58, 138
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	219
TasI	AATT	3 cut(s)	33, 58, 138
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	32, 132
Tru9I	TTAA	2 cut(s)	32, 132
TseI	GCWGC	3 cut(s)	125, 212, 215
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.