Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

15181570 .. 15181938

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTTCTCGATCAGCCGTGTAAAACTCCCCCAAAAAACTCAAAAGCCGAAATCCACACAGAGAGAGAGAGAGGCAGCTGCCACCACCGCCACCACCGGAACCCTAAAAACGCGCCGGTTTCAATGGCCGAGTCGACTCAGCTCCAGCAGGCGCAACTCGCGACGATTCTCGCTCCCGACCCGGCCCCTTTCGAAACCCTACTCTCCCACCTGATGGCCTCCGTCAACGAGCAGCGATCCCAGGCCGAGCTCAACCTCTGCAAGCAGACCGATCCTGATTCGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

6.57

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	2 cut(s)	113, 161
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	2 cut(s)	231, 266
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	78, 142, 250
AluI	AGCT	3 cut(s)	78, 142, 250
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	231, 266
AoxI	GGCC	4 cut(s)	126, 183, 216, 243
ApeKI	GCWGC	3 cut(s)	75, 78, 232
AspLEI	GCGC	2 cut(s)	115, 154
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	65, 87, 244
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	182
BisI	GCNGC	3 cut(s)	76, 79, 233
BlsI	GCNGC	3 cut(s)	77, 80, 234
Bme1390I	CCNGG	2 cut(s)	182, 242
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	101, 186
BmrFI	CCNGG	2 cut(s)	182, 242
BpmI	CTGGAG	1 cut(s)	128
Bpu14I	TTCGAA	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	65, 87, 244
Bsh1236I	CGCG	2 cut(s)	113, 161
BshFI	GGCC	4 cut(s)	128, 185, 218, 245
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	97, 116, 182
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	4 cut(s)	128, 185, 218, 245
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	10, 236, 271
Bsp68I	TCGCGA	1 cut(s)	161
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	4 cut(s)	128, 185, 218, 245
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	113, 161
BspLI	GGNNCC	2 cut(s)	101, 186
BspPI	GGATC	2 cut(s)	231, 266
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	10, 236, 271
Bst2UI	CCWGG	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	150, 263
BstDEI	CTNAG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	113, 161
BstHHI	GCGC	2 cut(s)	115, 154
BstKTI	GATC	3 cut(s)	13, 239, 274
BstMBI	GATC	3 cut(s)	10, 236, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 158
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	180, 240
BstUI	CGCG	2 cut(s)	113, 161
BstV1I	GCAGC	3 cut(s)	65, 87, 244
BsuRI	GGCC	4 cut(s)	128, 185, 218, 245
BtuMI	TCGCGA	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	150, 263
CfoI	GCGC	2 cut(s)	115, 154
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	184
CviJI	RGCY	9 cut(s)	16, 47, 78, 128, 142, 185, 218, 245, 250
CviKI_1	RGCY	9 cut(s)	16, 47, 78, 128, 142, 185, 218, 245, 250
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	12, 238, 273
DpnII	GATC	3 cut(s)	10, 236, 271
EaeI	YGGCCR	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	76, 79, 233
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	76, 79, 233
GlaI	GCGC	2 cut(s)	114, 153
GluI	GCNGC	3 cut(s)	76, 79, 233
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	128, 185, 218, 245
HapII	CCGG	3 cut(s)	97, 116, 182
HhaI	GCGC	2 cut(s)	115, 154
Hin6I	GCGC	2 cut(s)	113, 152
HinP1I	GCGC	2 cut(s)	113, 152
HincII	GTYRAC	2 cut(s)	135, 226
HindII	GTYRAC	2 cut(s)	135, 226
HinfI	GANTC	4 cut(s)	131, 136, 166, 278
HpaII	CCGG	3 cut(s)	97, 116, 182
Hpy166II	GTNNAC	2 cut(s)	135, 226
Hpy188III	TCNNGA	4 cut(s)	8, 160, 176, 275
Hpy8I	GTNNAC	2 cut(s)	135, 226
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 158
HpyF3I	CTNAG	1 cut(s)	138
HspAI	GCGC	2 cut(s)	113, 152
Kzo9I	GATC	3 cut(s)	10, 236, 271
LmnI	GCTCC	2 cut(s)	147, 178
LpnPI	CCDG	8 cut(s)	110, 129, 134, 158, 195, 224, 227, 254
Lsp1109I	GCAGC	3 cut(s)	65, 87, 244
MalI	GATC	3 cut(s)	12, 238, 273
MboI	GATC	3 cut(s)	10, 236, 271
MhlI	GDGCHC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	130, 140
MnlI	CCTC	3 cut(s)	65, 229, 266
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	3 cut(s)	97, 116, 182
MspR9I	CCNGG	2 cut(s)	182, 242
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	113, 161
MwoI	GCNNNNNNNGC	2 cut(s)	87, 158
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	3 cut(s)	10, 236, 271
NlaIV	GGNNCC	2 cut(s)	101, 186
NmeAIII	GCCGAG	2 cut(s)	154, 271
NruI	TCGCGA	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	166, 278
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	77, 80, 234
PleI	GAGTC	2 cut(s)	130, 139
PpsI	GAGTC	2 cut(s)	130, 139
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	101, 186
PspPI	GGNCC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	78
RruI	TCGCGA	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	133
SatI	GCNGC	3 cut(s)	76, 79, 233
Sau3AI	GATC	3 cut(s)	10, 236, 271
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	2 cut(s)	130, 140
ScrFI	CCNGG	2 cut(s)	182, 242
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	5 cut(s)	80, 144, 213, 252, 258
SfuI	TTCGAA	1 cut(s)	192
SsiI	CCGC	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	180, 240
TaqI	TCGA	3 cut(s)	9, 134, 192
TaqII	GACCGA	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	166, 278
TseI	GCWGC	3 cut(s)	75, 78, 232
TspGWI	ACGGA	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.