Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004967.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

61768 .. 62711

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004967.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggccgggtcgactcagcttgagcaagtcgcgacgattcttggccccgacccgctcgcctctttcgaaaccctaatctcctccctcttctcctccaattccgagcagcgatcccgggccgagctcgtcttcaacatctgcaaaaactacgaacccgattcactctccctcacactcgctcacctcctccgattctcacccgcaccggactcccaatttatctccgccgtcctcctccgcaatcaaatccgcctatggcgaagcctctctgagaacacacatatgtccttcgtggcgcgatcaactattgatttggaaactgcgagcaggcttgatcgtcttctggttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

5.59

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	32, 298
AciI	CCGC	5 cut(s)	53, 201, 225, 238, 250
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	19, 124
AluI	AGCT	2 cut(s)	19, 124
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	3, 43, 117
ApeKI	GCWGC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	44, 117
AsuC2I	CCSGG	3 cut(s)	7, 115, 116
AsuHPI	GGTGA	2 cut(s)	173, 189
AsuII	TTCGAA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	121, 332
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	212
BcnI	CCSGG	3 cut(s)	7, 115, 116
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	3 cut(s)	7, 115, 116
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	44, 117
BmiI	GGNNCC	2 cut(s)	46, 348
BmrFI	CCNGG	3 cut(s)	7, 115, 116
BpiI	GAAGAC	2 cut(s)	121, 332
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	3 cut(s)	7, 115, 116
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	29, 261
BseRI	GAGGAG	4 cut(s)	70, 82, 176, 224
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	32, 298
BshFI	GGCC	3 cut(s)	5, 45, 119
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	6, 115, 206
BsnI	GGCC	3 cut(s)	5, 45, 119
BsoBI	CYCGRG	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	110, 299, 334
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	5 cut(s)	53, 201, 225, 238, 250
BspANI	GGCC	3 cut(s)	5, 45, 119
BspCNI	CTCAG	2 cut(s)	28, 262
BspFNI	CGCG	2 cut(s)	32, 298
BspLI	GGNNCC	2 cut(s)	46, 348
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	3 cut(s)	110, 299, 334
Bst6I	CTCTTC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	57, 325, 329
BstDEI	CTNAG	2 cut(s)	15, 270
BstFNI	CGCG	2 cut(s)	32, 298
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	3 cut(s)	113, 302, 337
BstMBI	GATC	3 cut(s)	110, 299, 334
BstSCI	CCNGG	3 cut(s)	5, 113, 114
BstUI	CGCG	2 cut(s)	32, 298
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	2 cut(s)	121, 332
BsuRI	GGCC	3 cut(s)	5, 45, 119
BtuMI	TCGCGA	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	57, 325, 329
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	44, 117
Cfr9I	CCCGGG	1 cut(s)	114
CviJI	RGCY	7 cut(s)	5, 19, 45, 119, 124, 264, 331
CviKI_1	RGCY	7 cut(s)	5, 19, 45, 119, 124, 264, 331
DdeI	CTNAG	2 cut(s)	15, 270
DpnI	GATC	3 cut(s)	112, 301, 336
DpnII	GATC	3 cut(s)	110, 299, 334
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	214, 239
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	3 cut(s)	256, 282, 284
FauI	CCCGC	2 cut(s)	60, 208
FauNDI	CATATG	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	107
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	5, 45, 119
HapII	CCGG	3 cut(s)	6, 115, 206
HhaI	GCGC	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	13, 37, 158, 192, 209
HpaII	CCGG	3 cut(s)	6, 115, 206
HphI	GGTGA	2 cut(s)	173, 189
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	103, 191, 271
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	15, 270
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	110, 299, 334
LpnPI	CCDG	5 cut(s)	19, 128, 219, 313, 329
Lsp1109I	GCAGC	1 cut(s)	118
MalI	GATC	3 cut(s)	112, 301, 336
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	3 cut(s)	110, 299, 334
MboII	GAAGA	3 cut(s)	79, 121, 332
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	97, 215
MlyI	GAGTC	2 cut(s)	7, 203
MseI	TTAA	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	3 cut(s)	6, 115, 206
MspR9I	CCNGG	3 cut(s)	7, 115, 116
MvnI	CGCG	2 cut(s)	32, 298
NciI	CCSGG	3 cut(s)	7, 115, 116
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	3 cut(s)	110, 299, 334
NlaIV	GGNNCC	2 cut(s)	46, 348
NmeAIII	GCCGAG	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	37, 158, 192
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	2 cut(s)	7, 203
PpsI	GAGTC	2 cut(s)	7, 203
Psp124BI	GAGCTC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	46, 348
PspPI	GGNCC	2 cut(s)	44, 117
RruI	TCGCGA	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	3 cut(s)	110, 299, 334
Sau96I	GGNCC	2 cut(s)	44, 117
SchI	GAGTC	2 cut(s)	7, 203
ScrFI	CCNGG	3 cut(s)	7, 115, 116
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	3 cut(s)	21, 126, 186
SfuI	TTCGAA	1 cut(s)	66
SmaI	CCCGGG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	97, 215
SsiI	CCGC	5 cut(s)	53, 201, 225, 238, 250
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	5, 113, 114
TaqI	TCGA	2 cut(s)	11, 66
TasI	AATT	2 cut(s)	97, 215
TfiI	GAWTC	3 cut(s)	37, 158, 192
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TseI	GCWGC	1 cut(s)	106
TspMI	CCCGGG	1 cut(s)	114
XmaI	CCCGGG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.