Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

13353458 .. 13353974

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATTTTACTTTTCCCACGGAAGAATTTACTATTTGTTGATCACTGTTCATTTACAGTGATTTATTGTACATATACAATAAAAAACAGTTTTGCCACCCTCAGTTCTAACAGCTTTGGGCCTCTATGTTGGGCCTATTTTTCTTTGTCGGTAGAGCGATCCCAGGCCGAGCTCCTCTTCAACCTCTCACTCAAACTCGCTCACCTCCTCCAATTCTCGCCGGCGCAGGAGGCCCGAGCCATGTCCGTCATCCTCCTCCGCAAGCAGCTCACCCGCGACGACACCTATCTCTGGCCGCGGCTCTCTCCGTACACTCAGTCCACTCTCAAGATCTCTCTCTCTCGCTTCATAAATCGGAGTTGTGCAGTCAGTAACCAAATCCAAATCCTTTCCAGATTTGGTCTCCAAGAATTTCAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

141

Amino Acids

16.2

Weight (kDa)

9.69

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	276, 298
AciI	CCGC	4 cut(s)	259, 274, 296, 298
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	25, 410
AfaI	GTAC	2 cut(s)	70, 311
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	3 cut(s)	114, 172, 268
AluI	AGCT	3 cut(s)	114, 172, 268
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	5 cut(s)	119, 132, 165, 231, 293
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	25, 410
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	119, 132, 232
AsuHPI	GGTGA	2 cut(s)	194, 262
AvaI	CYCGRG	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	330
BisI	GCNGC	3 cut(s)	266, 296, 299
BlsI	GCNGC	3 cut(s)	267, 297, 300
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	119, 132, 232
BmrFI	CCNGG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	17, 162, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	17, 162, 296
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	115, 329
BseRI	GAGGAG	3 cut(s)	164, 197, 245
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	2 cut(s)	276, 298
BshFI	GGCC	5 cut(s)	121, 134, 167, 233, 295
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	5 cut(s)	121, 134, 167, 233, 295
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	40, 158, 330
BspACI	CCGC	4 cut(s)	259, 274, 296, 298
BspANI	GGCC	5 cut(s)	121, 134, 167, 233, 295
BspCNI	CTCAG	2 cut(s)	114, 328
BspFNI	CGCG	2 cut(s)	276, 298
BspPI	GGATC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	17, 162, 296
BssMI	GATC	3 cut(s)	40, 158, 330
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	47, 58, 89
Bst6I	CTCTTC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	222, 263
BstDEI	CTNAG	2 cut(s)	101, 315
BstDSI	CCRYGG	2 cut(s)	17, 296
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	2 cut(s)	276, 298
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	43, 161, 333
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	40, 158, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	276, 298
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	5 cut(s)	121, 134, 167, 233, 295
BtgI	CCRYGG	2 cut(s)	17, 296
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	43, 63
Cac8I	GCNNGC	2 cut(s)	222, 263
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	3 cut(s)	119, 132, 232
Cfr42I	CCGCGG	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	69, 310
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	2 cut(s)	69, 310
DdeI	CTNAG	2 cut(s)	101, 315
DpnI	GATC	3 cut(s)	42, 160, 332
DpnII	GATC	3 cut(s)	40, 158, 330
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	244
FaiI	YATR	5 cut(s)	73, 75, 127, 242, 350
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	266, 296, 299
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	266, 296, 299
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	266, 296, 299
HaeIII	GGCC	5 cut(s)	121, 134, 167, 233, 295
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	194, 262
Hpy166II	GTNNAC	2 cut(s)	312, 321
Hpy188I	TCNGA	2 cut(s)	357, 417
Hpy188III	TCNNGA	2 cut(s)	328, 393
Hpy8I	GTNNAC	2 cut(s)	312, 321
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	3 cut(s)	47, 58, 89
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	101, 315
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	40, 158, 330
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	6 cut(s)	149, 176, 212, 234, 277, 406
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	42, 160, 332
MboI	GATC	3 cut(s)	40, 158, 330
MboII	GAAGA	2 cut(s)	34, 169
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	3 cut(s)	25, 212, 410
MnlI	CCTC	9 cut(s)	110, 132, 185, 194, 215, 218, 223, 263, 266
MreI	CGCCGGCG	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	276, 298
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	222
NdeII	GATC	3 cut(s)	40, 158, 330
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	244
NmeAIII	GCCGAG	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	267, 297, 300
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	119, 132, 232
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	2 cut(s)	70, 311
RsaNI	GTAC	2 cut(s)	69, 310
SacI	GAGCTC	1 cut(s)	174
SacII	CCGCGG	1 cut(s)	299
SatI	GCNGC	3 cut(s)	266, 296, 299
Sau3AI	GATC	3 cut(s)	40, 158, 330
Sau96I	GGNCC	3 cut(s)	119, 132, 232
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	116, 174, 186, 207, 270, 287
Sfr303I	CCGCGG	1 cut(s)	299
SgrAI	CRCCGGYG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	25, 212, 410
SsiI	CCGC	4 cut(s)	259, 274, 296, 298
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	47, 58, 89
TasI	AATT	3 cut(s)	25, 212, 410
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	2 cut(s)	298, 301
TscAI	CASTG	2 cut(s)	50, 63
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	39, 337
TspGWI	ACGGA	3 cut(s)	34, 235, 297
TspRI	CASTG	2 cut(s)	50, 63
XapI	RAATTY	2 cut(s)	25, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.