RLG00000006894

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
11595236 .. 11595670
435 bp
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UTR
Exon/CDS
Intron
RLM00000006894

Sequence Viewer

Length: 360 bp
ATGGCCGAGTCGACTCAGCTCCAACTTCAACTTGAGCAAGTTGCGACGATTCTTGGCCCCGACCCCGTCACCTCTTTCAAAACCCTAATCTCCTACCTCTTCTGCCCCTCATATTTTGAAAGCCTAATCTCCTCCCTCTTCTCCTCCAATTCTGAGCAGCGATCCGACTCGCTCTCCCTCACACTCGCTCACCTCCTCCAATTCTCACCGGCACCGAACTCCCTATTTATCTCTGCAGTCCTCCTCCGCAATCAAATCCTCCTCTGGCCAAGCCTCTTGGAGAGCACACAATCCACGATCAAATCCGCTCTATTGTTCTCCATTCAACGACAGAGTTCCGACAAGTCGTCGTCTTCGTGA

Protein Analysis

120

Amino Acids

13.1

Weight (kDa)

5.12

Isoelectric Point (pI)

66.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 11
AciI CCGC 2 cut(s) 247, 306
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 2 cut(s) 3, 266
AgsI TTSAA 4 cut(s) 29, 79, 119, 326
AhdI GACNNNNNGTC 1 cut(s) 346
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 287
AlwI GGATC 1 cut(s) 156
AoxI GGCC 3 cut(s) 3, 55, 266
ApeKI GCWGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 61, 182, 198
BalI TGGCCA 1 cut(s) 268
BanI GGYRCC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 58, 213
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse118I RCCGGY 1 cut(s) 208
BseMII CTCAG 2 cut(s) 29, 144
BseRI GAGGAG 5 cut(s) 121, 133, 185, 233, 251
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 3 cut(s) 5, 57, 268
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 209
BsnI GGCC 3 cut(s) 5, 57, 268
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 161, 297
BspACI CCGC 2 cut(s) 247, 306
BspANI GGCC 3 cut(s) 5, 57, 268
BspCNI CTCAG 2 cut(s) 28, 145
BspLI GGNNCC 2 cut(s) 58, 213
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 211
BsrBI CCGCTC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 2 cut(s) 161, 297
Bst6I CTCTTC 2 cut(s) 104, 143
BstDEI CTNAG 2 cut(s) 15, 153
BstKTI GATC 2 cut(s) 164, 300
BstMBI GATC 2 cut(s) 161, 297
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 3 cut(s) 5, 57, 268
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 56
CviJI RGCY 6 cut(s) 5, 19, 57, 123, 268, 273
CviKI_1 RGCY 6 cut(s) 5, 19, 57, 123, 268, 273
DdeI CTNAG 2 cut(s) 15, 153
DpnI GATC 2 cut(s) 163, 299
DpnII GATC 2 cut(s) 161, 297
DriI GACNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 2 cut(s) 3, 266
Eam1104I CTCTTC 2 cut(s) 104, 143
Eam1105I GACNNNNNGTC 1 cut(s) 346
EarI CTCTTC 2 cut(s) 104, 143
FaiI YATR 1 cut(s) 112
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 3 cut(s) 5, 57, 268
HapII CCGG 1 cut(s) 209
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 4 cut(s) 8, 13, 49, 167
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 61, 182, 198
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 154, 166, 340
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 49, 352
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 15, 153
Kzo9I GATC 2 cut(s) 161, 297
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 222, 250
Lsp1109I GCAGC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 163, 299
MbiI CCGCTC 1 cut(s) 308
MboI GATC 2 cut(s) 161, 297
MboII GAAGA 3 cut(s) 91, 130, 345
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 2 cut(s) 148, 200
MluNI TGGCCA 1 cut(s) 268
MlyI GAGTC 3 cut(s) 7, 17, 161
MmeI TCCRAC 2 cut(s) 46, 189
Mox20I TGGCCA 1 cut(s) 268
MscI TGGCCA 1 cut(s) 268
Msp20I TGGCCA 1 cut(s) 268
MspI CCGG 1 cut(s) 209
NdeII GATC 2 cut(s) 161, 297
NlaIV GGNNCC 2 cut(s) 58, 213
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 3 cut(s) 7, 16, 161
PpsI GAGTC 3 cut(s) 7, 16, 161
PspN4I GGNNCC 2 cut(s) 58, 213
PspPI GGNCC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 10
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 161, 297
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 3 cut(s) 7, 17, 161
SduI GDGCHC 1 cut(s) 287
SetI ASST 4 cut(s) 21, 74, 99, 195
SfcI CTRYAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 148, 200
SsiI CCGC 2 cut(s) 247, 306
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 148, 200
TfiI GAWTC 1 cut(s) 49
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.