Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004932.1

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

102953 .. 103800

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004932.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgctgcaggttgctgaacctgagtcctcggccagggagtgtttggataggcttgccatttccttgggtgggaataccattgttcccgtcgcgtccgagcagttgcctgcccccgagtggcagaaacaccatgcagcattgattgctgagggttgttccaaggtaatgataaaaaatttggagccagtggtggcagtggtcttgaactcgtttcaagatcctcgtcctcgtgtaaggtgggcagctattaatgcatttgggcagttgtctactgatttgggcccagacctgcaagttcaatatcatcaatgggtgcttccggcattagctgctgccatggatgattttcagaaccctcgtgtgcaggtacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

124

Amino Acids

13.63

Weight (kDa)

5.43

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	297, 355
AccI	GTMKAC	1 cut(s)	269
AccII	CGCG	1 cut(s)	92
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	3 cut(s)	33, 69, 117
AgsI	TTSAA	3 cut(s)	205, 215, 299
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	245, 329
AluI	AGCT	2 cut(s)	245, 329
AlwI	GGATC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	30, 280
ApaI	GGGCCC	1 cut(s)	284
ApeKI	GCWGC	5 cut(s)	4, 134, 242, 329, 332
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	280, 281
AvaI	CYCGRG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	2 cut(s)	228, 357
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	146, 254, 316, 319
BciT130I	CCWGG	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	2 cut(s)	297, 355
BisI	GCNGC	5 cut(s)	5, 135, 243, 330, 333
BlsI	GCNGC	5 cut(s)	6, 136, 244, 331, 334
Bme1390I	CCNGG	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	280, 281
BmiI	GGNNCC	2 cut(s)	183, 282
BmrFI	CCNGG	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	27, 33, 63, 159, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 69, 117
Bse1I	ACTGG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	5 cut(s)	27, 33, 63, 159, 336
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	3 cut(s)	33, 69, 117
BseMII	CTCAG	2 cut(s)	12, 138
BseNI	ACTGG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	4 cut(s)	146, 254, 316, 319
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	32, 282
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	33, 69, 117
BsnI	GGCC	2 cut(s)	32, 282
BsoBI	CYCGRG	1 cut(s)	113
Bsp120I	GGGCCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	336
BspANI	GGCC	2 cut(s)	32, 282
BspCNI	CTCAG	2 cut(s)	13, 139
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	183, 282
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	2 cut(s)	297, 355
BspPI	GGATC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	185
BssECI	CCNNGG	5 cut(s)	27, 33, 63, 159, 336
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	2 cut(s)	228, 357
BssT1I	CCWWGG	3 cut(s)	63, 159, 336
Bst2BI	CACGAG	2 cut(s)	228, 357
Bst2UI	CCWGG	1 cut(s)	34
BstAPI	GCANNNNNTGC	2 cut(s)	143, 329
BstC8I	GCNNGC	2 cut(s)	54, 108
BstDEI	CTNAG	2 cut(s)	21, 147
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 251, 329
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	146, 254, 316, 319
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	32, 282
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	192, 201
BveI	ACCTGC	2 cut(s)	297, 355
Cac8I	GCNNGC	2 cut(s)	54, 108
Cfr13I	GGNCC	2 cut(s)	280, 281
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	131, 337
CviJI	RGCY	6 cut(s)	32, 52, 184, 245, 282, 329
CviKI_1	RGCY	6 cut(s)	32, 52, 184, 245, 282, 329
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	21, 147
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	63, 159, 336
Eco24I	GRGCYC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	3 cut(s)	63, 159, 336
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	3 cut(s)	63, 159, 336
FaeI	CATG	2 cut(s)	134, 340
FaiI	YATR	2 cut(s)	132, 338
FatI	CATG	2 cut(s)	130, 336
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	5, 135, 243, 330, 333
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	5, 135, 243, 330, 333
GluI	GCNGC	5 cut(s)	5, 135, 243, 330, 333
HaeIII	GGCC	2 cut(s)	32, 282
HapII	CCGG	1 cut(s)	320
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	134, 340
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	97, 351
Hpy188III	TCNNGA	2 cut(s)	202, 215
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	7, 134, 254, 292, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 251, 329
HpyF3I	CTNAG	2 cut(s)	21, 147
Hsp92II	CATG	2 cut(s)	134, 340
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	9 cut(s)	19, 33, 46, 120, 198, 297, 302, 333, 350
Lsp1109I	GCAGC	4 cut(s)	146, 254, 316, 319
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	5 cut(s)	37, 142, 231, 237, 366
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	143, 251, 329
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	134, 340
NlaIV	GGNNCC	2 cut(s)	183, 282
NmeAIII	GCCGAG	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	6, 136, 244, 331, 334
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PshBI	ATTAAT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	183, 282
PspOMI	GGGCCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	280, 281
PstI	CTGCAG	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	5 cut(s)	5, 135, 243, 330, 333
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	280, 281
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	8 cut(s)	12, 22, 165, 239, 247, 291, 331, 369
SfcI	CTRYAG	1 cut(s)	5
Sse9I	AATT	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	3 cut(s)	63, 159, 336
TasI	AATT	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	192, 201
TseI	GCWGC	5 cut(s)	4, 134, 242, 329, 332
TspRI	CASTG	2 cut(s)	192, 201
VspI	ATTAAT	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.