Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

35082860 .. 35083555

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1158900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCGGACCCTCACCTGACCTCACCATGGTCACCACCATCAAATTCCTCTGCAGCTACGGCGGCAAAATCCTCCCCCGTTACCTTGGCGGCGAAACCCGTGTACTCGCCGTTCCCCGCTCTATTTCCTTTTCCGAGCTGTCGTCCAAGCTGACGGAGTTGTGTGGGCCATCCGTGACGGCGGTTAGTCTCCGCTGTCAACTACCCACCGAAGATCTCGACGCCCTCGTGTCCATCAAGTCCGATGAGGATCTCGTTAATCTCATCGAGGAATACGACAGAGCAGCCTCTTCCGCTAATATGAAGATCAGAGCACTCCTCTCACTCATCCCTGCCGCCGAGGCCCGCGCCATGTTCGCGATTCTCTTCCGCAAGCAGCTCACCCGCAACGACTCGTATCTCTGGCCCCGATTGAATCCGACGACCCAATCAACGCTGAAGACGATTCTGCTGACGTGTATTCAGCAGGAGGGCGCGAAATCCATCTCCAAGAAGCTCTGTGATACGATTTCCGAGCTCGCCTCTGGGATTTTACCCGATAACGGATGGCCGGAGCTGCTGCCGTTTATGTTCCAGTGCGGCGTTCTTGATATTCGATCAGTTATCGCAGTACATCGGCGACATCATAGTGCCGCACATAAAAGAATTGCACGCCGTCATCAATTTCATTCAGTGTTTGACCAGCTCTGCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

232

Amino Acids

25.58

Weight (kDa)

8.87

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	27 - 98	9.1e-16	PB1 domain
TPR_IPO5	PF25780	160 - 193	2e-06	IPO5-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	120
AccII	CGCG	3 cut(s)	348, 359, 476
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	2 cut(s)	3, 548
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	105, 612
AfiI	CCNNNNNNNGG	2 cut(s)	28, 542
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	456
AluBI	AGCT	8 cut(s)	57, 139, 151, 379, 496, 517, 556, 685
AluI	AGCT	8 cut(s)	57, 139, 151, 379, 496, 517, 556, 685
Alw21I	GWGCWC	2 cut(s)	316, 519
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	5 cut(s)	3, 167, 342, 404, 548
ApeKI	GCWGC	5 cut(s)	54, 284, 376, 556, 559
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	350, 476
AspS9I	GGNCC	4 cut(s)	8, 167, 343, 405
AsuHPI	GGTGA	4 cut(s)	6, 16, 25, 373
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	316, 519
BbvI	GCAGC	5 cut(s)	66, 296, 388, 543, 546
BccI	CCATC	5 cut(s)	47, 178, 242, 491, 540
BceAI	ACGGC	5 cut(s)	76, 95, 195, 547, 639
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	456
BmgT120I	GGNCC	4 cut(s)	8, 167, 343, 405
BmiI	GGNNCC	2 cut(s)	10, 407
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	4 cut(s)	303, 335, 506, 538
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	27, 85, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 542
Bse1I	ACTGG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	27, 85, 339
BseGI	GGATG	3 cut(s)	170, 327, 551
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	28, 542
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	66, 296, 388, 543, 546
Bsh1236I	CGCG	3 cut(s)	348, 359, 476
BshFI	GGCC	5 cut(s)	5, 169, 344, 406, 550
BsiHKAI	GWGCWC	2 cut(s)	316, 519
BsiSI	CCGG	2 cut(s)	6, 551
BslI	CCNNNNNNNGG	2 cut(s)	28, 542
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	5 cut(s)	5, 169, 344, 406, 550
Bsp1286I	GDGCHC	2 cut(s)	316, 519
Bsp143I	GATC	4 cut(s)	214, 250, 306, 596
Bsp19I	CCATGG	1 cut(s)	27
Bsp68I	TCGCGA	1 cut(s)	359
BspANI	GGCC	5 cut(s)	5, 169, 344, 406, 550
BspFNI	CGCG	3 cut(s)	348, 359, 476
BspLI	GGNNCC	2 cut(s)	10, 407
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	27, 85, 339
BssMI	GATC	4 cut(s)	214, 250, 306, 596
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	27, 85
Bst2BI	CACGAG	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	295, 371
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	346, 374, 519, 652
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	170, 327, 551
BstFNI	CGCG	3 cut(s)	348, 359, 476
BstHHI	GCGC	2 cut(s)	350, 476
BstKTI	GATC	4 cut(s)	217, 253, 309, 599
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	214, 250, 306, 596
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 63, 293, 341, 356, 556
BstPI	GGTNACC	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	3 cut(s)	348, 359, 476
BstV1I	GCAGC	5 cut(s)	66, 296, 388, 543, 546
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	2 cut(s)	214, 250
BstYI	RGATCY	2 cut(s)	214, 250
BsuRI	GGCC	5 cut(s)	5, 169, 344, 406, 550
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	170, 327, 551
BtsIMutI	CAGTG	2 cut(s)	581, 678
BtuMI	TCGCGA	1 cut(s)	359
Cac8I	GCNNGC	4 cut(s)	346, 374, 519, 652
CfoI	GCGC	2 cut(s)	350, 476
Cfr13I	GGNCC	4 cut(s)	8, 167, 343, 405
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	104, 611
CviAII	CATG	2 cut(s)	28, 352
CviQI	GTAC	2 cut(s)	104, 611
DpnI	GATC	4 cut(s)	216, 252, 308, 598
DpnII	GATC	4 cut(s)	214, 250, 306, 596
EaeI	YGGCCR	2 cut(s)	3, 548
Eam1104I	CTCTTC	2 cut(s)	295, 371
EarI	CTCTTC	2 cut(s)	295, 371
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	27, 85
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	27, 85
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	27, 85
FaeI	CATG	2 cut(s)	31, 355
FaiI	YATR	6 cut(s)	29, 302, 353, 569, 627, 639
FatI	CATG	2 cut(s)	27, 351
FauI	CCCGC	3 cut(s)	125, 353, 392
FokI	GGATG	3 cut(s)	157, 314, 558
FriOI	GRGCYC	1 cut(s)	519
GlaI	GCGC	2 cut(s)	349, 475
HaeIII	GGCC	5 cut(s)	5, 169, 344, 406, 550
HapII	CCGG	2 cut(s)	6, 551
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	350, 476
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	31, 355
Hin6I	GCGC	2 cut(s)	348, 474
HinP1I	GCGC	2 cut(s)	348, 474
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	4 cut(s)	361, 392, 415, 445
HpaII	CCGG	2 cut(s)	6, 551
HphI	GGTGA	4 cut(s)	6, 16, 25, 373
Hpy166II	GTNNAC	2 cut(s)	104, 200
Hpy188I	TCNGA	5 cut(s)	136, 244, 311, 420, 514
Hpy188III	TCNNGA	3 cut(s)	218, 358, 587
Hpy8I	GTNNAC	2 cut(s)	104, 200
Hpy99I	CGWCG	2 cut(s)	224, 424
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	54, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 63, 293, 341, 356, 556
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	31, 355
HspAI	GCGC	2 cut(s)	348, 474
Kzo9I	GATC	4 cut(s)	214, 250, 306, 596
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	8 cut(s)	19, 30, 345, 388, 452, 510, 564, 587
Lsp1109I	GCAGC	5 cut(s)	66, 296, 388, 543, 546
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	31, 80, 175
MalI	GATC	4 cut(s)	216, 252, 308, 598
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	4 cut(s)	214, 250, 306, 596
MboII	GAAGA	5 cut(s)	224, 282, 316, 358, 451
MflI	RGATCY	2 cut(s)	214, 250
MhlI	GDGCHC	2 cut(s)	316, 519
MluCI	AATT	3 cut(s)	44, 645, 662
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	443
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	6, 551
MvnI	CGCG	3 cut(s)	348, 359, 476
MwoI	GCNNNNNNNGC	6 cut(s)	60, 63, 293, 341, 356, 556
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	4 cut(s)	214, 250, 306, 596
NlaIII	CATG	2 cut(s)	31, 355
NlaIV	GGNNCC	2 cut(s)	10, 407
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	31, 175
NruI	TCGCGA	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 273, 440
PfeI	GAWTC	3 cut(s)	361, 415, 445
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	519
PspEI	GGTNACC	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	10, 407
PspPI	GGNCC	4 cut(s)	8, 167, 343, 405
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	214, 250
RruI	TCGCGA	1 cut(s)	359
RsaI	GTAC	2 cut(s)	105, 612
RsaNI	GTAC	2 cut(s)	104, 611
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	214, 250, 306, 596
Sau96I	GGNCC	4 cut(s)	8, 167, 343, 405
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	316, 519
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	3 cut(s)	44, 645, 662
SstI	GAGCTC	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	27, 85
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	3 cut(s)	219, 267, 595
TasI	AATT	3 cut(s)	44, 645, 662
TatI	WGTACW	2 cut(s)	103, 610
TauI	GCSGC	5 cut(s)	66, 93, 338, 582, 635
TfiI	GAWTC	3 cut(s)	361, 415, 445
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	581, 678
TseFI	GTSAC	2 cut(s)	31, 175
TseI	GCWGC	5 cut(s)	54, 284, 376, 556, 559
Tsp45I	GTSAC	2 cut(s)	31, 175
TspDTI	ATGAA	2 cut(s)	317, 656
TspGWI	ACGGA	3 cut(s)	163, 170, 558
TspRI	CASTG	2 cut(s)	581, 678
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.