Rmu_co8031396.1_g000001

Importin-5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8031396.1
OG0000344
Physical Location & Seq
Forward (+)
149 .. 547
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8031396.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atggccgccgatccaagtcagcagcagcagctggccataattcttggcccggacccgagtcagttcgaaaccctaatctctcatctcatgtcctccagcaacgagcaacggtcgcaggccgaggccctcttcaacctctgcaagcaggcccacccggacgccctcttactgaagctggtccatgtgttgcaggcgtcgacccgacccgagtcccgcaccatgtccgtcatcctcctccggcggcagctcactcgcgacgactcgttcctctggccccgcctcagcccctccactcagtcgaccctcaagtccgcactcctcacttgcctccaatcagaatccaccaaatccatggccaagaagctctgcgacaccgtttcggagctcgcttctgccatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_2 HEAT_EZ IBN_N

Protein Analysis

133

Amino Acids

14.68

Weight (kDa)

7.76

Isoelectric Point (pI)

73.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 197, 299
AccII CGCG 1 cut(s) 255
AciI CCGC 5 cut(s) 6, 214, 241, 277, 312
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 3 cut(s) 3, 33, 354
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 2 cut(s) 159, 194
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 5 cut(s) 31, 175, 247, 364, 385
AluI AGCT 5 cut(s) 31, 175, 247, 364, 385
Alw21I GWGCWC 1 cut(s) 387
AlwI GGATC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 2 cut(s) 55, 206
AoxI GGCC 8 cut(s) 3, 33, 46, 117, 123, 147, 272, 354
ApeKI GCWGC 4 cut(s) 22, 25, 28, 244
AspS9I GGNCC 6 cut(s) 47, 52, 124, 148, 178, 273
AsuC2I CCSGG 2 cut(s) 50, 155
AsuII TTCGAA 1 cut(s) 66
AvaI CYCGRG 2 cut(s) 55, 206
AvaII GGWCC 2 cut(s) 52, 178
BalI TGGCCA 2 cut(s) 35, 356
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 387
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 4 cut(s) 34, 37, 40, 256
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcnI CCSGG 2 cut(s) 50, 155
BisI GCNGC 6 cut(s) 6, 23, 26, 29, 242, 245
BlsI GCNGC 6 cut(s) 7, 24, 27, 30, 243, 246
Bme1390I CCNGG 2 cut(s) 50, 155
Bme18I GGWCC 2 cut(s) 52, 178
BmeT110I CYCGRG 2 cut(s) 55, 206
BmgT120I GGNCC 6 cut(s) 47, 52, 124, 148, 178, 273
BmiI GGNNCC 2 cut(s) 54, 275
BmrFI CCNGG 2 cut(s) 50, 155
BoxI GACNNNNGTC 2 cut(s) 57, 208
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 50, 155
BsaHI GRCGYC 2 cut(s) 159, 194
BsaJI CCNNGG 2 cut(s) 120, 351
BseDI CCNNGG 2 cut(s) 120, 351
BseGI GGATG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 295, 308
BseRI GAGGAG 2 cut(s) 224, 308
BseXI GCAGC 4 cut(s) 34, 37, 40, 256
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 8 cut(s) 5, 35, 48, 119, 125, 149, 274, 356
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 55, 206
BsiSI CCGG 3 cut(s) 50, 155, 238
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 8 cut(s) 5, 35, 48, 119, 125, 149, 274, 356
BsoBI CYCGRG 2 cut(s) 55, 206
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 351
Bsp68I TCGCGA 1 cut(s) 255
BspACI CCGC 5 cut(s) 6, 214, 241, 277, 312
BspANI GGCC 8 cut(s) 5, 35, 48, 119, 125, 149, 274, 356
BspCNI CTCAG 2 cut(s) 294, 307
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 54, 275
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 120, 351
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 2 cut(s) 159, 194
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 111, 376
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 159, 194
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 6 cut(s) 33, 117, 143, 147, 192, 387
BstDEI CTNAG 2 cut(s) 281, 294
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 28, 112
BstPAI GACNNNNGTC 2 cut(s) 57, 208
BstSCI CCNGG 2 cut(s) 48, 153
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 34, 37, 40, 256
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuRI GGCC 8 cut(s) 5, 35, 48, 119, 125, 149, 274, 356
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 228
BtuMI TCGCGA 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 33, 117, 143, 147, 192, 387
CaiI CAGNNNCTG 1 cut(s) 31
Cfr13I GGNCC 6 cut(s) 47, 52, 124, 148, 178, 273
CseI GACGC 2 cut(s) 167, 183
CviAII CATG 4 cut(s) 88, 182, 220, 352
DdeI CTNAG 2 cut(s) 281, 294
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 3 cut(s) 3, 33, 354
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 52, 178
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 2 cut(s) 55, 206
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 91, 185, 223, 355
FaiI YATR 5 cut(s) 38, 89, 183, 221, 353
FaqI GGGAC 1 cut(s) 196
FatI CATG 4 cut(s) 87, 181, 219, 351
FauI CCCGC 2 cut(s) 221, 284
FblI GTMKAC 2 cut(s) 197, 299
Fnu4HI GCNGC 6 cut(s) 6, 23, 26, 29, 242, 245
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 6 cut(s) 6, 23, 26, 29, 242, 245
GluI GCNGC 6 cut(s) 6, 23, 26, 29, 242, 245
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 8 cut(s) 5, 35, 48, 119, 125, 149, 274, 356
HapII CCGG 3 cut(s) 50, 155, 238
HgaI GACGC 2 cut(s) 167, 183
Hin1I GRCGYC 2 cut(s) 159, 194
Hin1II CATG 4 cut(s) 91, 185, 223, 355
HincII GTYRAC 2 cut(s) 198, 300
HindII GTYRAC 2 cut(s) 198, 300
HinfI GANTC 4 cut(s) 58, 209, 260, 338
HpaII CCGG 3 cut(s) 50, 155, 238
Hpy166II GTNNAC 2 cut(s) 198, 300
Hpy188I TCNGA 2 cut(s) 337, 382
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 2 cut(s) 198, 300
Hpy99I CGWCG 2 cut(s) 199, 260
HpyCH4III ACNGT 2 cut(s) 111, 376
HpyCH4V TGCA 2 cut(s) 141, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 112
HpyF3I CTNAG 2 cut(s) 281, 294
Hsp92I GRCGYC 2 cut(s) 159, 194
Hsp92II CATG 4 cut(s) 91, 185, 223, 355
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 4 cut(s) 34, 37, 40, 256
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 2 cut(s) 35, 356
MluCI AATT 1 cut(s) 39
MluNI TGGCCA 2 cut(s) 35, 356
MlyI GAGTC 3 cut(s) 67, 218, 254
Mox20I TGGCCA 2 cut(s) 35, 356
MscI TGGCCA 2 cut(s) 35, 356
Msp20I TGGCCA 2 cut(s) 35, 356
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 3 cut(s) 50, 155, 238
MspR9I CCNGG 2 cut(s) 50, 155
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 28, 112
NciI CCSGG 2 cut(s) 50, 155
NcoI CCATGG 1 cut(s) 351
NdeII GATC 1 cut(s) 10
NlaIII CATG 4 cut(s) 91, 185, 223, 355
NlaIV GGNNCC 2 cut(s) 54, 275
NmeAIII GCCGAG 1 cut(s) 145
NruI TCGCGA 1 cut(s) 255
NspV TTCGAA 1 cut(s) 66
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 6 cut(s) 7, 24, 27, 30, 243, 246
PleI GAGTC 3 cut(s) 66, 217, 254
PpsI GAGTC 3 cut(s) 66, 217, 254
PshAI GACNNNNGTC 2 cut(s) 57, 208
Psp124BI GAGCTC 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 54, 275
PspPI GGNCC 6 cut(s) 47, 52, 124, 148, 178, 273
PstNI CAGNNNCTG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 31
RruI TCGCGA 1 cut(s) 255
SacI GAGCTC 1 cut(s) 387
SalI GTCGAC 2 cut(s) 196, 298
SatI GCNGC 6 cut(s) 6, 23, 26, 29, 242, 245
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 6 cut(s) 47, 52, 124, 148, 178, 273
SchI GAGTC 3 cut(s) 67, 218, 254
ScrFI CCNGG 2 cut(s) 50, 155
SduI GDGCHC 1 cut(s) 387
SetI ASST 6 cut(s) 33, 138, 177, 249, 366, 387
SfuI TTCGAA 1 cut(s) 66
SinI GGWCC 2 cut(s) 52, 178
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 39
SsiI CCGC 5 cut(s) 6, 214, 241, 277, 312
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 48, 153
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 111, 376
TaqI TCGA 3 cut(s) 66, 197, 299
TasI AATT 1 cut(s) 39
TauI GCSGC 2 cut(s) 8, 244
TfiI GAWTC 1 cut(s) 338
TseI GCWGC 4 cut(s) 22, 25, 28, 244
TspGWI ACGGA 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 52, 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmiI GTMKAC 2 cut(s) 197, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.