Rh3CG343100

HEAT repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000344
Physical Location & Seq
Reverse (-)
38763420 .. 38764345
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG343100.1

Sequence Viewer

Length: 264 bp
ATGCTGATCCAGATTGGGAGCAAGAAACAAAAAGCCACTGCTTTATCAGCTTTGTCATCAGTTGCTAGATCCTCCAAGGGCGGTTTCACTGCTTATTATAAAATTAGCATAGATTCGTTAAAAAGTATATTGCTGACAGAGACTGGTCCCTGTATGTCTCTCATGAGTCTCATCCAAGCAAAGTGTCTGAAATGCGTTACTAATATTGGACTAGCTGTTGGGAAGGAAAGATCTAGTAAGGATGCATTGGAGGTAAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_2 HEAT_EZ IFRD

Protein Analysis

87

Amino Acids

9.21

Weight (kDa)

9.63

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 2 cut(s) 50, 215
AluI AGCT 2 cut(s) 50, 215
Alw26I GTCTC 3 cut(s) 134, 162, 173
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 134, 162, 173
BfaI CTAG 4 cut(s) 66, 212, 234, 262
BglII AGATCT 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 171, 247
BseNI ACTGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 3 cut(s) 134, 162, 173
BsmFI GGGAC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 6, 68, 230
BspACI CCGC 1 cut(s) 81
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 6, 68, 230
BssT1I CCWWGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 171, 247
BstKTI GATC 3 cut(s) 9, 71, 233
BstMAI GTCTC 3 cut(s) 134, 162, 173
BstMBI GATC 3 cut(s) 6, 68, 230
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 68, 230
BstYI RGATCY 2 cut(s) 68, 230
BtsCI GGATG 2 cut(s) 171, 247
BtsI GCAGTG 2 cut(s) 36, 87
BtsIMutI CAGTG 2 cut(s) 36, 87
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 1 cut(s) 163
CviJI RGCY 3 cut(s) 35, 50, 215
CviKI_1 RGCY 3 cut(s) 35, 50, 215
DpnI GATC 3 cut(s) 8, 70, 232
DpnII GATC 3 cut(s) 6, 68, 230
Eco130I CCWWGG 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 166
FaiI YATR 5 cut(s) 99, 110, 128, 155, 164
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 162
FokI GGATG 2 cut(s) 158, 254
FspBI CTAG 4 cut(s) 66, 212, 234, 262
Hin1II CATG 1 cut(s) 166
HinfI GANTC 2 cut(s) 113, 166
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 10, 163
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 3 cut(s) 6, 68, 230
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 23, 129, 163
LweI GCATC 1 cut(s) 232
MaeI CTAG 4 cut(s) 66, 212, 234, 262
MaeIII GTNAC 1 cut(s) 196
MalI GATC 3 cut(s) 8, 70, 232
MboI GATC 3 cut(s) 6, 68, 230
MflI RGATCY 2 cut(s) 68, 230
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 2 cut(s) 82, 244
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 6, 68, 230
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 247
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 1 cut(s) 113
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 2 cut(s) 68, 230
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 3 cut(s) 6, 68, 230
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 175
SetI ASST 3 cut(s) 52, 217, 255
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 146
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 81
SspI AATATT 1 cut(s) 205
SspMI CTAG 4 cut(s) 66, 212, 234, 262
StyI CCWWGG 1 cut(s) 75
TasI AATT 1 cut(s) 102
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 43, 94
TspRI CASTG 2 cut(s) 43, 94
VpaK11BI GGWCC 1 cut(s) 146
XspI CTAG 4 cut(s) 66, 212, 234, 262
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.