Rh7AG014000

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
909103 .. 911676
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG014000.1

Sequence Viewer

Length: 324 bp
ATGGTCTTGAACTCGTTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCGATTGGACAGTTGTCTACTGATTTGCGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAATCCTCGTGTGCAGATTAGTAGAACATCCGATGTATCAGTTGGAAGATATGCAGTTTCCGTAGAAATGGTCTTTGTAAATTTTCTTGGTAATAGGTTTCATTTTGCACAGCTTCATGAGATATGCAAGCTCTTGGAGGTTCATGCACATTCATCCCATTTGGTCTGA

Protein Analysis

107

Amino Acids

12.17

Weight (kDa)

7.06

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 74
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 235
AgsI TTSAA 3 cut(s) 10, 20, 104
AluBI AGCT 4 cut(s) 50, 134, 268, 286
AluI AGCT 4 cut(s) 50, 134, 268, 286
AlwI GGATC 1 cut(s) 17
ApeKI GCWGC 3 cut(s) 47, 134, 137
ApoI RAATTY 1 cut(s) 235
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 87
BauI CACGAG 2 cut(s) 33, 162
BbvI GCAGC 3 cut(s) 59, 121, 124
BfuAI ACCTGC 1 cut(s) 102
BisI GCNGC 3 cut(s) 48, 135, 138
BlsI GCNGC 3 cut(s) 49, 136, 139
BoxI GACNNNNGTC 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 4 cut(s) 28, 151, 182, 308
BseJI GATNNNNATC 1 cut(s) 27
BseXI GCAGC 3 cut(s) 59, 121, 124
BsgI GTGCAG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 22
BssSI CACGAG 2 cut(s) 33, 162
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 2 cut(s) 33, 162
Bst4CI ACNGT 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 28, 151, 182, 308
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 56, 134
BstPAI GACNNNNGTC 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 59, 121, 124
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 28, 151, 182, 308
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 284
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 87
CviAII CATG 3 cut(s) 142, 272, 299
CviJI RGCY 4 cut(s) 50, 134, 268, 286
CviKI_1 RGCY 4 cut(s) 50, 134, 268, 286
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 145, 275, 302
FaiI YATR 5 cut(s) 143, 207, 273, 280, 300
FatI CATG 3 cut(s) 141, 271, 298
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 48, 135, 138
FokI GGATG 4 cut(s) 15, 158, 169, 295
Fsp4HI GCNGC 3 cut(s) 48, 135, 138
GlaI GCGC 1 cut(s) 86
GluI GCNGC 3 cut(s) 48, 135, 138
HapII CCGG 1 cut(s) 125
HhaI GCGC 1 cut(s) 87
Hin1II CATG 3 cut(s) 145, 275, 302
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 156, 187, 323
Hpy188III TCNNGA 3 cut(s) 7, 20, 272
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 6 cut(s) 97, 169, 209, 263, 282, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 134
Hsp92II CATG 3 cut(s) 145, 275, 302
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 102, 107, 138
Lsp1109I GCAGC 3 cut(s) 59, 121, 124
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 213
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 4 cut(s) 36, 42, 171, 286
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 33
MspI CCGG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 56, 134
NcoI CCATGG 1 cut(s) 141
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 145, 275, 302
PagI TCATGA 1 cut(s) 271
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 3 cut(s) 49, 136, 139
PshAI GACNNNNGTC 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 54
PsuI RGATCY 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 48, 135, 138
Sau3AI GATC 1 cut(s) 22
SetI ASST 8 cut(s) 44, 52, 96, 136, 254, 270, 288, 297
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 1 cut(s) 235
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 69
TasI AATT 1 cut(s) 235
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 3 cut(s) 47, 134, 137
TspDTI ATGAA 4 cut(s) 245, 260, 287, 297
TspGWI ACGGA 1 cut(s) 205
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.