Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

87590874 .. 87598436

Gene Structure 7563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG569800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGGCCGAGTCGACTCAGCTCCAGCAGGCGCAACTCGCGACGATTCTCGGCCCCGACCCGGCCCCTTTCGAAACCCTAATCTCCCACCTGATGGCCTCCGCCAACGAGCAGCGATCCCAGGCCGAGCTCCTCTTCAATCTCTGCAAGCAGACCGATCCTGACTCGCTCTCACTCAAACTCGCTCACCTCCTCCAGTTCTCGCCGGCGCAGGAGGCCCGGGCCATGTCCGCCATTCTCCTCCGCAAGCAGCTCACCCGCGACGACTCCTATCTCTGGCCCAGGCTCTCCCCGACGACGCAGTCCAGCCTCAAATCGATTCTCCTGTCCTGTATTCAACGCGAGGAGGTCAAATCGATTTCCAAGAAGCTCTGCGACACCATCTCCGAGCTCGCCTCCGGAATCTTGCCGGACAACGGCTGGCCGGAGCTCCTCCCGTTCATGTTCCAATGCGTCTCCTCCGATTCGCCCAAGCTGCAAGAATCGGCGTTCCTGATATTCGCGCAGCTTTCTCAGTACATCGGCGACTCCTTGGTTCCGTTCATCAAGGAATTGCACGCCGTCTTCTTGCACTGCCTGAGCTCCTCCACCAACTCTGACGTTAAGATCGCCGCCTTGAATGCCGTGATTAATTTCATTCAGTGTTTGAGCAGCTCCGGAGATAGGGATAGGTTTCAGGACCTATTGCCGGCGATGATGAGGACATTGATGGAGTCTTTGAACAACGGGAACGAGGCCACGGCGCAGGAGGCACTCGAGTTGTTCATCGAATTGGCTGGGACTGAGCCCAGGTTCCTCAGGAGGCAGATTGTGGAGGTGGTTGGGTCTATGCTGCAGGTTGCTGAAGCTGAGTCCTTGGAAGAAGGGACCAGGCACTTGGCCATAGAGTTTGTAATCACTCTAGCCGAGGCCAGGGAGCGAGCCCCGGGGATGATGAGGAAGCTGCCGCAGTTTATTAGTCGGTTGTTTGCCATTTTGATGAAGATGGTTTTGGATATCGAGGATGATCCCTCATGGCATACCGCTGATACTGAAGACGAGGATGCTGGTGAGAGTGGTAATTACAGTGTTGGGCAGGAGTGTTTGGATAGGCTTGCCATTTCGTTGGGTGGGAATACCATTGTTCCCGTGGCGTCCGAGCAGTTGCCTGCTTATTTGGCTGCCCCCGAGTGGCAGAAACACCATGCAGCATTGATTGCCCTTGCACAGATTGCTGAGGGTTGTTCTAAGGTAATGATAAAAAATTTGGAGCAAGTGGTGGCAATGGTCTTGAACTCATTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCAATTGGGCAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGGCACATGCTGCTTCAGCAGTGCTCAACTTCAGTGAGAACTGTACACCAGATATTTTGACACCTTATTTGGATGGAATAGTGAGCAAATTGCTTGTACTTCTGCAGAATGGGAAACAAATGGTGCAAGAGGGGGCATTGACTGCTTTGGCATCAGTTGCTGATTCATCTCAGGAGCATTTCCAAAAATACTATGATGCCGTTATGCCTTACCTGAAAGCTATCTTGGTGAATGCAACTGATAAATCTAATCGCATGCTTCGGGCTAAATCCATGGAATGTATTAGCTTGGTTGGTATGGCTGTTGGAAAAGAGAAATTCAGGGATGATGCTAAGCAGGTCATGGAAGTGCTGATGTCATTGCAAGGGTCTCAAATGGAGGCAGATGACCCAACTACAAGTTACATGCTACAAGCATGGGCTAGACTCTGCAAGTGTTTAGGACAAGATTTCCTCCCGTACATGAGCGTTGTAATGCCTCCTTTGCTTCAGTCTGCTCAACTTAAGCCAGATGTAACTATTACCTCCGCAGATGACAATAGTGATATCGATGAATCTGATGATGAAAGTATGGAAACAATTACTCTTGGAGATAAAAGGATTGGAATCAAGACTAGTGTATTGGAAGAAAAAGCTACAGCTTGCAATATGCTGTGTTGCTATGCAGATGAACTGAAAGAAGGTTTCTTTCCTTGGATTGATCAGGTTGCCCCAACTTTAGTTCCACTTCTTAAATTTTATTTCCATGAAGAAGTGAGGAAGGCAGCTGTTTCAGCAATGCCGGAGCTACTGCTTTCTGCAAAGTTAGCTATAGAGAAAGGGTTAGCTCAAGGTCGTAATGAAACCTATATAAAGCAATTGTCTGACTACATTGTTCCAGCTCTGGTGGAAGCATTGCATAAGGAACCTGATACAGAAATCTGCGCAAATATATTGGATGCGATAAATGAATGCATACAGATCTCTGGACCACTTTTAGATGAAAGCCAGGTCAGATCCATTGTTGAGGAGATAAAGCAGGTGATCACTGCCAGTTCAAGTAGGAAAAGAGAGAGAGCAGAAAGGACCCAAGCAGAAGATTTTGATGATGAGGAAAGGGAACTGATTAAAGAGGAAAATGAACAAGAGGAAGAAGTTTTTGATCAAGTCGGAGAAATTTTGGGAACTCTGATTAAAACATTCAAAGCCTCTTTCTTGCCTTTCTTTGATGAGCTATCAACATATCTAACACCTATGTGGGGTAAGGATAAAACACCTGAAGAGAGAAGGATTGCAATATGCATCTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCAGCTCTAAAATATTATGACACATTTCTTCCCTTTCTATTGGAGGCTTGTAATGATGAGAGCCCTGATGTTCGACAGGCAGCTGTATATGGACTTGGTGTCTGTGCAGAGTTTGGTGGATCTGTAATTAAACCTCTTATTCGCGTGGCTCTTTCGAGGCTAAATGTTGTGATTCAGCATCCCAATGCCCTGCAACCTGACAACATAATGGCATATGATAATGCGGTTTCTGCTCTAGGAAAGATTTGCCAATATCATCGTGATAGTATAGATGCACCTCAGGTACCTCCATTTGTTTGTTTTGTATTCATATGGATTTATTATTGTTGCTCTGATGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

1028

Amino Acids

114.32

Weight (kDa)

4.67

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	117 - 273	1.9e-35	IPO5-like, TPR repeats
Importin_rep_4	PF18808	284 - 375	8.5e-23	Importin repeat
HEAT_2	PF13646	384 - 483	4.2e-07	HEAT repeats
HEAT_EZ	PF13513	390 - 444	2.9e-08	HEAT-like repeat
TOR1L1_N	PF24714	396 - 593	1.9e-08	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	474 - 528	4.9e-07	HEAT-like repeat
TPR_IMB1	PF25574	478 - 647	8.1e-12	Importin subunit beta-1-like, TPR repeats
Importin_rep_6	PF18829	784 - 887	1.7e-19	Importin repeat 6
HEAT_EZ	PF13513	895 - 947	7.9e-07	HEAT-like repeat
HEAT	PF02985	923 - 951	1.9e-06	HEAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2437
AasI	GACNNNNNNGTC	1 cut(s)	298
Acc16I	TGCGCA	1 cut(s)	2353
Acc36I	ACCTGC	4 cut(s)	823, 1362, 1756, 2437
Acc65I	GGTACC	1 cut(s)	3025
AccB1I	GGYRCC	1 cut(s)	3025
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	11, 1334
AccII	CGCG	5 cut(s)	38, 258, 339, 500, 2886
AccIII	TCCGGA	2 cut(s)	395, 653
AciI	CCGC	9 cut(s)	99, 228, 241, 256, 609, 944, 1020, 1956, 2966
AclWI	GGATC	6 cut(s)	108, 149, 998, 1277, 2418, 2869
AcoI	YGGCCR	3 cut(s)	3, 419, 876
AcsI	RAATTY	4 cut(s)	1240, 1745, 2162, 2583
AcuI	CTGAAG	6 cut(s)	861, 1050, 1428, 1444, 1901, 2706
AcyI	GRCGYC	1 cut(s)	1130
AfaI	GTAC	5 cut(s)	515, 1474, 1527, 1889, 3027
AfiI	CCNNNNNNNGG	9 cut(s)	58, 91, 273, 413, 660, 685, 909, 1167, 2666
AflII	CTTAAG	1 cut(s)	1931
AgsI	TTSAA	9 cut(s)	136, 335, 616, 718, 1270, 1280, 1364, 2466, 2611
AhdI	GACNNNNNGTC	1 cut(s)	2840
AhlI	ACTAGT	1 cut(s)	2042
AjnI	CCWGG	6 cut(s)	117, 278, 785, 866, 908, 2415
AjuI	GAANNNNNNNTTGG	4 cut(s)	971, 1003, 1637, 1669
AleI	CACNNNNGTG	1 cut(s)	2662
Alw21I	GWGCWC	5 cut(s)	129, 390, 429, 581, 1455
Alw26I	GTCTC	2 cut(s)	457, 1803
AlwI	GGATC	6 cut(s)	108, 149, 998, 1277, 2418, 2869
AlwNI	CAGNNNCTG	1 cut(s)	1589
Ama87I	CYCGRG	4 cut(s)	216, 752, 922, 1163
Aor13HI	TCCGGA	2 cut(s)	395, 653
ApaI	GGGCCC	1 cut(s)	1349
ApoI	RAATTY	4 cut(s)	1240, 1745, 2162, 2583
ArsI	GACNNNNNNTTYG	2 cut(s)	1480, 1512
AseI	ATTAAT	2 cut(s)	627, 1314
Asp718I	GGTACC	1 cut(s)	3025
AspLEI	GCGC	5 cut(s)	31, 208, 502, 742, 2354
AsuC2I	CCSGG	5 cut(s)	59, 217, 218, 923, 924
AsuHPI	GGTGA	5 cut(s)	176, 244, 1058, 1669, 2461
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	4 cut(s)	216, 752, 922, 1163
AvaII	GGWCC	4 cut(s)	676, 864, 2396, 2493
AxyI	CCTNAGG	2 cut(s)	794, 3021
BaeGI	GKGCMC	1 cut(s)	1349
BalI	TGGCCA	1 cut(s)	878
BanI	GGYRCC	1 cut(s)	3025
BanII	GRGCYC	8 cut(s)	129, 390, 429, 581, 786, 922, 1349, 2807
BauI	CACGAG	2 cut(s)	1293, 1422
BbsI	GAAGAC	2 cut(s)	553, 1038
Bbv12I	GWGCWC	5 cut(s)	129, 390, 429, 581, 1455
BbvCI	CCTCAGC	1 cut(s)	1212
BccI	CCATC	5 cut(s)	85, 386, 700, 976, 1496
BceAI	ACGGC	5 cut(s)	430, 542, 605, 753, 1613
BciT130I	CCWGG	6 cut(s)	119, 280, 787, 868, 910, 2417
BclI	TGATCA	3 cut(s)	2128, 2451, 2569
BcnI	CCSGG	5 cut(s)	59, 217, 218, 923, 924
BcoDI	GTCTC	2 cut(s)	457, 1803
BcuI	ACTAGT	1 cut(s)	2042
BfaI	CTAG	4 cut(s)	899, 1851, 2043, 2978
BfmI	CTRYAG	4 cut(s)	830, 1532, 2064, 2238
BfrI	CTTAAG	1 cut(s)	1931
BfuAI	ACCTGC	4 cut(s)	823, 1362, 1756, 2437
BglII	AGATCT	1 cut(s)	2388
BlpI	GCTNAGC	1 cut(s)	1761
Bme18I	GGWCC	4 cut(s)	676, 864, 2396, 2493
BmeRI	GACNNNNNGTC	1 cut(s)	2840
BmeT110I	CYCGRG	4 cut(s)	216, 752, 922, 1163
BmiI	GGNNCC	9 cut(s)	52, 63, 534, 791, 865, 1347, 2334, 2495, 3027
BmsI	GCATC	8 cut(s)	1030, 1589, 1615, 1747, 2356, 2718, 2929, 3004
BpiI	GAAGAC	2 cut(s)	553, 1038
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	2 cut(s)	5, 176
Bpu10I	CCTNAGC	2 cut(s)	575, 1212
Bpu1102I	GCTNAGC	1 cut(s)	1761
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	2241
BpuMI	CCSGG	5 cut(s)	59, 217, 218, 923, 924
Bsa29I	ATCGAT	3 cut(s)	314, 353, 1977
BsaBI	GATNNNNATC	2 cut(s)	1287, 2033
BsaHI	GRCGYC	1 cut(s)	1130
BsaI	GGTCTC	1 cut(s)	1803
BsaWI	WCCGGW	2 cut(s)	395, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	9 cut(s)	58, 91, 273, 413, 660, 685, 909, 1167, 2666
Bse118I	RCCGGY	2 cut(s)	202, 685
Bse1I	ACTGG	2 cut(s)	193, 2460
Bse21I	CCTNAGG	2 cut(s)	794, 3021
Bse3DI	GCAATG	4 cut(s)	1266, 1787, 2211, 2321
Bse8I	GATNNNNATC	2 cut(s)	1287, 2033
BseAI	TCCGGA	2 cut(s)	395, 653
BseBI	CCWGG	6 cut(s)	119, 280, 787, 868, 910, 2417
BseCI	ATCGAT	3 cut(s)	314, 353, 1977
BseGI	GGATG	9 cut(s)	933, 1006, 1045, 1288, 1411, 1507, 1759, 2371, 2920
BseJI	GATNNNNATC	2 cut(s)	1287, 2033
BseLI	CCNNNNNNNGG	9 cut(s)	58, 91, 273, 413, 660, 685, 909, 1167, 2666
BseMI	GCAATG	4 cut(s)	1266, 1787, 2211, 2321
BseMII	CTCAG	9 cut(s)	29, 524, 566, 771, 808, 837, 1203, 1613, 3035
BseNI	ACTGG	2 cut(s)	193, 2460
BseRI	GAGGAG	8 cut(s)	119, 179, 227, 356, 419, 445, 571, 2450
BseSI	GKGCMC	1 cut(s)	1349
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	2 cut(s)	1448, 2868
Bsh1236I	CGCG	5 cut(s)	38, 258, 339, 500, 2886
BshNI	GGYRCC	1 cut(s)	3025
BshVI	ATCGAT	3 cut(s)	314, 353, 1977
BsiHKAI	GWGCWC	5 cut(s)	129, 390, 429, 581, 1455
BsiHKCI	CYCGRG	4 cut(s)	216, 752, 922, 1163
BslFI	GGGAC	2 cut(s)	790, 877
BslI	CCNNNNNNNGG	9 cut(s)	58, 91, 273, 413, 660, 685, 909, 1167, 2666
BsmAI	GTCTC	2 cut(s)	457, 1803
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	2 cut(s)	790, 877
BsmI	GAATGC	3 cut(s)	622, 1666, 2384
Bso31I	GGTCTC	1 cut(s)	1803
BsoBI	CYCGRG	4 cut(s)	216, 752, 922, 1163
Bsp119I	TTCGAA	1 cut(s)	69
Bsp120I	GGGCCC	1 cut(s)	1345
Bsp1286I	GDGCHC	9 cut(s)	129, 390, 429, 581, 786, 922, 1349, 1455, 2807
Bsp13I	TCCGGA	2 cut(s)	395, 653
Bsp1407I	TGTACA	1 cut(s)	1472
Bsp1720I	GCTNAGC	1 cut(s)	1761
Bsp19I	CCATGG	2 cut(s)	1401, 1701
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	9 cut(s)	99, 228, 241, 256, 609, 944, 1020, 1956, 2966
BspCNI	CTCAG	9 cut(s)	28, 523, 567, 772, 807, 838, 1204, 1612, 3034
BspDI	ATCGAT	3 cut(s)	314, 353, 1977
BspEI	TCCGGA	2 cut(s)	395, 653
BspFNI	CGCG	5 cut(s)	38, 258, 339, 500, 2886
BspLI	GGNNCC	9 cut(s)	52, 63, 534, 791, 865, 1347, 2334, 2495, 3027
BspMAI	CTGCAG	2 cut(s)	834, 1536
BspMI	ACCTGC	4 cut(s)	823, 1362, 1756, 2437
BspPI	GGATC	6 cut(s)	108, 149, 998, 1277, 2418, 2869
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	3025
BspTI	CTTAAG	1 cut(s)	1931
BspTNI	GGTCTC	1 cut(s)	1803
BsrDI	GCAATG	4 cut(s)	1266, 1787, 2211, 2321
BsrFI	RCCGGY	2 cut(s)	202, 685
BsrGI	TGTACA	1 cut(s)	1472
BsrI	ACTGG	2 cut(s)	193, 2460
BssAI	RCCGGY	2 cut(s)	202, 685
BssNI	GRCGYC	1 cut(s)	1130
BssSI	CACGAG	2 cut(s)	1293, 1422
BssT1I	CCWWGG	5 cut(s)	528, 852, 1401, 1701, 2120
Bst2BI	CACGAG	2 cut(s)	1293, 1422
Bst2UI	CCWGG	6 cut(s)	119, 280, 787, 868, 910, 2417
Bst4CI	ACNGT	2 cut(s)	1064, 1472
Bst6I	CTCTTC	2 cut(s)	137, 2682
BstACI	GRCGYC	1 cut(s)	1130
BstAFI	CTTAAG	1 cut(s)	1931
BstAPI	GCANNNNNTGC	6 cut(s)	1193, 1208, 1394, 1439, 1571, 1586
BstAUI	TGTACA	1 cut(s)	1472
BstBI	TTCGAA	1 cut(s)	69
BstDSI	CCRYGG	4 cut(s)	735, 1125, 1401, 1701
BstF5I	GGATG	9 cut(s)	933, 1006, 1045, 1288, 1411, 1507, 1759, 2371, 2920
BstFNI	CGCG	5 cut(s)	38, 258, 339, 500, 2886
BstHHI	GCGC	5 cut(s)	31, 208, 502, 742, 2354
BstMAI	GTCTC	2 cut(s)	457, 1803
BstNI	CCWGG	6 cut(s)	119, 280, 787, 868, 910, 2417
BstNSI	RCATGY	3 cut(s)	1439, 1687, 1837
BstSFI	CTRYAG	4 cut(s)	830, 1532, 2064, 2238
BstSLI	GKGCMC	1 cut(s)	1349
BstUI	CGCG	5 cut(s)	38, 258, 339, 500, 2886
BstV2I	GAAGAC	2 cut(s)	553, 1038
BstX2I	RGATCY	4 cut(s)	1282, 2388, 2423, 2861
BstXI	CCANNNNNNTGG	2 cut(s)	874, 1102
BstYI	RGATCY	4 cut(s)	1282, 2388, 2423, 2861
Bsu15I	ATCGAT	3 cut(s)	314, 353, 1977
Bsu36I	CCTNAGG	2 cut(s)	794, 3021
BsuTUI	ATCGAT	3 cut(s)	314, 353, 1977
BtgI	CCRYGG	4 cut(s)	735, 1125, 1401, 1701
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	9 cut(s)	933, 1006, 1045, 1288, 1411, 1507, 1759, 2371, 2920
BtsI	GCAGTG	4 cut(s)	568, 1455, 2454, 2738
BtsIMutI	CAGTG	7 cut(s)	568, 644, 1069, 1455, 1468, 2454, 2738
BtuMI	TCGCGA	1 cut(s)	38
BveI	ACCTGC	4 cut(s)	823, 1362, 1756, 2437
CaiI	CAGNNNCTG	1 cut(s)	1589
CfoI	GCGC	5 cut(s)	31, 208, 502, 742, 2354
Cfr10I	RCCGGY	2 cut(s)	202, 685
Cfr9I	CCCGGG	2 cut(s)	216, 922
ClaI	ATCGAT	3 cut(s)	314, 353, 1977
CseI	GACGC	3 cut(s)	304, 439, 1119
Csp6I	GTAC	5 cut(s)	514, 1473, 1526, 1888, 3026
CviQI	GTAC	5 cut(s)	514, 1473, 1526, 1888, 3026
DrdI	GACNNNNNNGTC	1 cut(s)	298
DriI	GACNNNNNGTC	1 cut(s)	2840
DseDI	GACNNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	3 cut(s)	3, 419, 876
Eam1104I	CTCTTC	2 cut(s)	137, 2682
Eam1105I	GACNNNNNGTC	1 cut(s)	2840
EarI	CTCTTC	2 cut(s)	137, 2682
EciI	GGCGGA	2 cut(s)	88, 217
Ecl136II	GAGCTC	4 cut(s)	127, 388, 427, 579
Eco130I	CCWWGG	5 cut(s)	528, 852, 1401, 1701, 2120
Eco24I	GRGCYC	8 cut(s)	129, 390, 429, 581, 786, 922, 1349, 2807
Eco31I	GGTCTC	1 cut(s)	1803
Eco32I	GATATC	2 cut(s)	994, 1975
Eco47I	GGWCC	4 cut(s)	676, 864, 2396, 2493
Eco53kI	GAGCTC	4 cut(s)	127, 388, 427, 579
Eco57I	CTGAAG	6 cut(s)	861, 1050, 1428, 1444, 1901, 2706
Eco81I	CCTNAGG	2 cut(s)	794, 3021
Eco88I	CYCGRG	4 cut(s)	216, 752, 922, 1163
EcoICRI	GAGCTC	4 cut(s)	127, 388, 427, 579
EcoO109I	RGGNCCY	2 cut(s)	676, 2493
EcoRII	CCWGG	6 cut(s)	117, 278, 785, 866, 908, 2415
EcoRV	GATATC	2 cut(s)	994, 1975
EcoT14I	CCWWGG	5 cut(s)	528, 852, 1401, 1701, 2120
EcoT22I	ATGCAT	2 cut(s)	2384, 2711
EcoT38I	GRGCYC	8 cut(s)	129, 390, 429, 581, 786, 922, 1349, 2807
ErhI	CCWWGG	5 cut(s)	528, 852, 1401, 1701, 2120
Esp3I	CGTCTC	1 cut(s)	457
FaqI	GGGAC	2 cut(s)	790, 877
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	2 cut(s)	2956, 3053
FbaI	TGATCA	3 cut(s)	2128, 2451, 2569
FblI	GTMKAC	2 cut(s)	11, 1334
FokI	GGATG	9 cut(s)	940, 1013, 1052, 1275, 1418, 1514, 1766, 2378, 2907
FriOI	GRGCYC	8 cut(s)	129, 390, 429, 581, 786, 922, 1349, 2807
FspBI	CTAG	4 cut(s)	899, 1851, 2043, 2978
FspI	TGCGCA	1 cut(s)	2353
GlaI	GCGC	5 cut(s)	30, 207, 501, 741, 2353
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	2 cut(s)	5, 176
HgaI	GACGC	3 cut(s)	304, 439, 1119
HhaI	GCGC	5 cut(s)	31, 208, 502, 742, 2354
Hin1I	GRCGYC	1 cut(s)	1130
Hin6I	GCGC	5 cut(s)	29, 206, 500, 740, 2352
HinP1I	GCGC	5 cut(s)	29, 206, 500, 740, 2352
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HphI	GGTGA	5 cut(s)	176, 244, 1058, 1669, 2461
Hpy166II	GTNNAC	3 cut(s)	12, 1335, 1475
Hpy8I	GTNNAC	3 cut(s)	12, 1335, 1475
Hpy99I	CGWCG	4 cut(s)	43, 263, 295, 298
HpyAV	CCTTC	4 cut(s)	854, 2102, 2182, 2688
HpyCH4III	ACNGT	2 cut(s)	1064, 1472
HpyCH4IV	ACGT	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	597
Hsp92I	GRCGYC	1 cut(s)	1130
HspAI	GCGC	5 cut(s)	29, 206, 500, 740, 2352
Kpn2I	TCCGGA	2 cut(s)	395, 653
KpnI	GGTACC	1 cut(s)	3029
KroI	GCCGGC	2 cut(s)	202, 685
KroNI	GCCGGC	2 cut(s)	204, 687
Ksp22I	TGATCA	3 cut(s)	2128, 2451, 2569
LweI	GCATC	8 cut(s)	1030, 1589, 1615, 1747, 2356, 2718, 2929, 3004
MaeI	CTAG	4 cut(s)	899, 1851, 2043, 2978
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	1829, 1942
MfeI	CAATTG	2 cut(s)	1320, 2285
MflI	RGATCY	4 cut(s)	1282, 2388, 2423, 2861
MhlI	GDGCHC	9 cut(s)	129, 390, 429, 581, 786, 922, 1349, 1455, 2807
MlsI	TGGCCA	1 cut(s)	878
MluNI	TGGCCA	1 cut(s)	878
MlyI	GAGTC	8 cut(s)	7, 17, 155, 257, 518, 719, 857, 1848
MmeI	TCCRAC	2 cut(s)	1714, 2557
Mox20I	TGGCCA	1 cut(s)	878
Mph1103I	ATGCAT	2 cut(s)	2384, 2711
MreI	CGCCGGCG	1 cut(s)	202
MroI	TCCGGA	2 cut(s)	395, 653
MroNI	GCCGGC	2 cut(s)	202, 685
MscI	TGGCCA	1 cut(s)	878
MseI	TTAA	8 cut(s)	600, 627, 1314, 1932, 2160, 2535, 2601, 2871
MslI	CAYNNNNRTG	5 cut(s)	974, 1293, 1775, 2662, 2925
Msp20I	TGGCCA	1 cut(s)	878
MspA1I	CMGCKG	3 cut(s)	1022, 2195, 2825
MspCI	CTTAAG	1 cut(s)	1931
MunI	CAATTG	2 cut(s)	1320, 2285
Mva1269I	GAATGC	3 cut(s)	622, 1666, 2384
MvaI	CCWGG	6 cut(s)	119, 280, 787, 868, 910, 2417
MvnI	CGCG	5 cut(s)	38, 258, 339, 500, 2886
NaeI	GCCGGC	2 cut(s)	204, 687
NciI	CCSGG	5 cut(s)	59, 217, 218, 923, 924
NcoI	CCATGG	2 cut(s)	1401, 1701
NdeI	CATATG	2 cut(s)	2956, 3053
NgoMIV	GCCGGC	2 cut(s)	202, 685
NlaIV	GGNNCC	9 cut(s)	52, 63, 534, 791, 865, 1347, 2334, 2495, 3027
NmeAIII	GCCGAG	4 cut(s)	27, 31, 148, 928
NruI	TCGCGA	1 cut(s)	38
NsbI	TGCGCA	1 cut(s)	2353
NsiI	ATGCAT	2 cut(s)	2384, 2711
NspI	RCATGY	3 cut(s)	1439, 1687, 1837
NspV	TTCGAA	1 cut(s)	69
OliI	CACNNNNGTG	1 cut(s)	2662
PaeI	GCATGC	1 cut(s)	1687
PaeR7I	CTCGAG	1 cut(s)	752
PaqCI	CACCTGC	1 cut(s)	2437
PctI	GAATGC	3 cut(s)	622, 1666, 2384
PdiI	GCCGGC	2 cut(s)	204, 687
PfeI	GAWTC	9 cut(s)	43, 316, 399, 461, 479, 1592, 1982, 2034, 2914
PflFI	GACNNNGTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	91
PleI	GAGTC	8 cut(s)	7, 16, 155, 257, 518, 718, 856, 1848
PpsI	GAGTC	8 cut(s)	7, 16, 155, 257, 518, 718, 856, 1848
PpuMI	RGGWCCY	2 cut(s)	676, 2493
PshBI	ATTAAT	2 cut(s)	627, 1314
Psp124BI	GAGCTC	4 cut(s)	129, 390, 429, 581
Psp5II	RGGWCCY	2 cut(s)	676, 2493
Psp6I	CCWGG	6 cut(s)	117, 278, 785, 866, 908, 2415
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	6 cut(s)	117, 278, 785, 866, 908, 2415
PspN4I	GGNNCC	9 cut(s)	52, 63, 534, 791, 865, 1347, 2334, 2495, 3027
PspOMI	GGGCCC	1 cut(s)	1345
PspPPI	RGGWCCY	2 cut(s)	676, 2493
PspXI	VCTCGAGB	1 cut(s)	752
PstI	CTGCAG	2 cut(s)	834, 1536
PstNI	CAGNNNCTG	1 cut(s)	1589
PsuI	RGATCY	4 cut(s)	1282, 2388, 2423, 2861
PsyI	GACNNNGTC	1 cut(s)	298
PvuII	CAGCTG	2 cut(s)	2195, 2825
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	5 cut(s)	515, 1474, 1527, 1889, 3027
RsaNI	GTAC	5 cut(s)	514, 1473, 1526, 1888, 3026
RseI	CAYNNNNRTG	5 cut(s)	974, 1293, 1775, 2662, 2925
SacI	GAGCTC	4 cut(s)	129, 390, 429, 581
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	8 cut(s)	600, 627, 1314, 1932, 2160, 2535, 2601, 2871
SchI	GAGTC	8 cut(s)	7, 17, 155, 257, 518, 719, 857, 1848
SduI	GDGCHC	9 cut(s)	129, 390, 429, 581, 786, 922, 1349, 1455, 2807
SfaNI	GCATC	8 cut(s)	1030, 1589, 1615, 1747, 2356, 2718, 2929, 3004
SfcI	CTRYAG	4 cut(s)	830, 1532, 2064, 2238
Sfr274I	CTCGAG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	202
SinI	GGWCC	4 cut(s)	676, 864, 2396, 2493
SlaI	CTCGAG	1 cut(s)	752
SmaI	CCCGGG	2 cut(s)	218, 924
SmiMI	CAYNNNNRTG	5 cut(s)	974, 1293, 1775, 2662, 2925
SmlI	CTYRAG	3 cut(s)	752, 1931, 2256
SmoI	CTYRAG	3 cut(s)	752, 1931, 2256
SpeI	ACTAGT	1 cut(s)	2042
SphI	GCATGC	1 cut(s)	1687
SrfI	GCCCGGGC	1 cut(s)	218
SsiI	CCGC	9 cut(s)	99, 228, 241, 256, 609, 944, 1020, 1956, 2966
SspI	AATATT	1 cut(s)	2756
SspMI	CTAG	4 cut(s)	899, 1851, 2043, 2978
SstI	GAGCTC	4 cut(s)	129, 390, 429, 581
StyI	CCWWGG	5 cut(s)	528, 852, 1401, 1701, 2120
TaaI	ACNGT	2 cut(s)	1064, 1472
TaiI	ACGT	1 cut(s)	600
TaqII	GACCGA	1 cut(s)	167
TatI	WGTACW	3 cut(s)	513, 1472, 1525
TauI	GCSGC	2 cut(s)	611, 946
TfiI	GAWTC	9 cut(s)	43, 316, 399, 461, 479, 1592, 1982, 2034, 2914
Tru1I	TTAA	8 cut(s)	600, 627, 1314, 1932, 2160, 2535, 2601, 2871
Tru9I	TTAA	8 cut(s)	600, 627, 1314, 1932, 2160, 2535, 2601, 2871
TscAI	CASTG	7 cut(s)	575, 644, 1069, 1455, 1468, 2461, 2738
TspGWI	ACGGA	1 cut(s)	525
TspMI	CCCGGG	2 cut(s)	216, 922
TspRI	CASTG	7 cut(s)	575, 644, 1069, 1455, 1468, 2461, 2738
Tth111I	GACNNNGTC	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	91
Vha464I	CTTAAG	1 cut(s)	1931
VpaK11BI	GGWCC	4 cut(s)	676, 864, 2396, 2493
VspI	ATTAAT	2 cut(s)	627, 1314
XapI	RAATTY	4 cut(s)	1240, 1745, 2162, 2583
XceI	RCATGY	3 cut(s)	1439, 1687, 1837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1123
XhoI	CTCGAG	1 cut(s)	752
XmaI	CCCGGG	2 cut(s)	216, 922
XmiI	GTMKAC	2 cut(s)	11, 1334
XspI	CTAG	4 cut(s)	899, 1851, 2043, 2978
Zsp2I	ATGCAT	2 cut(s)	2384, 2711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.