Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

58026686 .. 58028652

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG381000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATAAAAGATTTGGAGCAAGTGGTGGCAATGGTTTTGAACTCCCTTGAACATCCACACATTCGGGTAAGGTGGTCAGCTATTAATGCAGTTGGCCAGTTGTCTACTTATTTGGCCTCAGACCTGCAAGTTCAATATCATCAACAGGTGTTTTCTGCACTGAATGCCACTATATATGGTTTGCAGAACAGTCGTCTACGGGCACATGCTGCTTCAGCACTGCAAAAATTCATTGAGAAATGTGCTAGGGATATCTTGACACCTTATTTGGATGAAGTGGTTTCCCAATTGGTTGTACTTTTGCAGGACCAATTCCAAAAATACTATGAAGATGTCATGATTCCCCTCAGAGTTATGTTGTTGGATGCCACTAATAACCCGGTTTGGTCCAAGCCCGTGGAGTGTATTAGCCTCGCTGGTATGGCTGTTGGAAAGGAGAAATTCAGGGATGATGCTAAGAAAGTCATGGAAGTGCTGCTGTCTTTTCAAGGATCTCAAATGGAGCTAGATGACCCAACTGCAAATTGCATGCTACAGTATGGAAACAATTACTCTTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

187

Amino Acids

21.3

Weight (kDa)

5.78

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD_2nd	PF25767	3 - 56	1e-05	Tubulin-specific chaperone D-like, ARM repeats
TPR_TNPO3_IPO13_3rd	PF24140	6 - 85	9.8e-07	Transportin-3/Importin-13 third TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccI	GTMKAC	2 cut(s)	104, 196
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	227, 440
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	40, 50, 134, 488
AluBI	AGCT	2 cut(s)	80, 505
AluI	AGCT	2 cut(s)	80, 505
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	2 cut(s)	94, 114
ApeKI	GCWGC	2 cut(s)	209, 475
ApoI	RAATTY	2 cut(s)	227, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	307, 387
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	307, 387
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	196, 462
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	2 cut(s)	246, 506
BfmI	CTRYAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	210, 476
BlsI	GCNGC	2 cut(s)	211, 477
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	307, 387
BmgT120I	GGNCC	2 cut(s)	307, 387
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	355, 442
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	4 cut(s)	52, 277, 370, 454
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	132, 361
BseNI	ACTGG	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	196, 462
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	96, 116
BsiSI	CCGG	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	96, 116
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	491
BspANI	GGCC	2 cut(s)	96, 116
BspCNI	CTCAG	2 cut(s)	131, 360
BspHI	TCATGA	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	191, 537
BstAPI	GCANNNNNTGC	2 cut(s)	164, 209
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	118, 347, 456
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	4 cut(s)	52, 277, 370, 454
BstKTI	GATC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	491
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 164, 209, 215, 422
BstNSI	RCATGY	2 cut(s)	209, 532
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	196, 462
BstX2I	RGATCY	1 cut(s)	491
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	96, 116
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	4 cut(s)	52, 277, 370, 454
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	158, 218
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	530
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	307, 387
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	4 cut(s)	206, 337, 466, 529
CviJI	RGCY	7 cut(s)	80, 96, 116, 394, 411, 425, 505
CviKI_1	RGCY	7 cut(s)	80, 96, 116, 394, 411, 425, 505
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	3 cut(s)	118, 347, 456
DpnI	GATC	1 cut(s)	493
DpnII	GATC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	307, 387
Eco57I	CTGAAG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	4 cut(s)	209, 340, 469, 532
FatI	CATG	4 cut(s)	205, 336, 465, 528
FblI	GTMKAC	2 cut(s)	104, 196
Fnu4HI	GCNGC	2 cut(s)	210, 476
FokI	GGATG	4 cut(s)	39, 284, 377, 461
Fsp4HI	GCNGC	2 cut(s)	210, 476
FspBI	CTAG	2 cut(s)	246, 506
GluI	GCNGC	2 cut(s)	210, 476
HaeIII	GGCC	2 cut(s)	96, 116
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	4 cut(s)	209, 340, 469, 532
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	105, 197
Hpy188I	TCNGA	2 cut(s)	121, 350
Hpy188III	TCNNGA	2 cut(s)	256, 337
Hpy8I	GTNNAC	2 cut(s)	105, 197
HpyCH4III	ACNGT	2 cut(s)	191, 537
HpyCH4V	TGCA	8 cut(s)	89, 127, 158, 184, 223, 304, 521, 528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 164, 209, 215, 422
HpyF3I	CTNAG	3 cut(s)	118, 347, 456
Hsp92II	CATG	4 cut(s)	209, 340, 469, 532
Kzo9I	GATC	1 cut(s)	491
LmnI	GCTCC	2 cut(s)	16, 502
LpnPI	CCDG	7 cut(s)	110, 131, 137, 290, 393, 402, 430
Lsp1109I	GCAGC	2 cut(s)	196, 462
LweI	GCATC	2 cut(s)	355, 442
MaeI	CTAG	2 cut(s)	246, 506
MalI	GATC	1 cut(s)	493
MboI	GATC	1 cut(s)	491
MboII	GAAGA	1 cut(s)	341
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	6 cut(s)	227, 287, 311, 440, 523, 547
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	342, 409
MnlI	CCTC	3 cut(s)	127, 356, 422
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	96
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	5 cut(s)	86, 164, 209, 215, 422
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	1 cut(s)	491
NlaIII	CATG	4 cut(s)	209, 340, 469, 532
NspI	RCATGY	2 cut(s)	209, 532
PaeI	GCATGC	1 cut(s)	532
PagI	TCATGA	1 cut(s)	336
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	211, 477
PshBI	ATTAAT	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	307, 387
PsuI	RGATCY	1 cut(s)	491
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	210, 476
Sau3AI	GATC	1 cut(s)	491
Sau96I	GGNCC	2 cut(s)	307, 387
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	74, 82, 126, 150, 265, 507
SfaNI	GCATC	2 cut(s)	355, 442
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	307, 387
SmiMI	CAYNNNNRTG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	6 cut(s)	227, 287, 311, 440, 523, 547
SspMI	CTAG	2 cut(s)	246, 506
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	191, 537
TasI	AATT	6 cut(s)	227, 287, 311, 440, 523, 547
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	165, 225
TseI	GCWGC	2 cut(s)	209, 475
TspDTI	ATGAA	3 cut(s)	220, 288, 342
TspRI	CASTG	2 cut(s)	165, 225
VpaK11BI	GGWCC	2 cut(s)	307, 387
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	2 cut(s)	227, 440
XceI	RCATGY	2 cut(s)	209, 532
XmiI	GTMKAC	2 cut(s)	104, 196
XspI	CTAG	2 cut(s)	246, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.