Rh1AG440500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000344
Physical Location & Seq
Forward (+)
66286419 .. 66288724
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG440500.1

Sequence Viewer

Length: 390 bp
ATGATGATGTCAGTGTCGGATCTTGGTTTATTGGGCTTGATGTTAAACATCTTAATGACGCCAAGTTTTGCTGCTCCTCTTGGACGGGAGAGTACAGACCATAAGACCAAGGCAAATGAGAAACTAGAAGAAACACCGGGGCTTAACATTCCCCAAGATAAACAAGCGCACAGATCTAGAGCTTGTACATTAAAACATTGTTATGTTTATCTGAAACATAAGAATTATCATTTTAACTGGTATAGTTGTAGCACCATCCAATTGTCGATATTTAACTCAGAATATACATCACAGGATTGTATACTACAACATGGCAAACCTAGAATTAAGACAGAACTATGGCGACTATCATATGTGAAGCCCAAGAGCAATTCTTTACAATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.86

Weight (kDa)

9.08

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AclWI GGATC 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 2 cut(s) 94, 187
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 263
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 3 cut(s) 125, 177, 321
BglII AGATCT 1 cut(s) 173
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 108, 137
Bse1I ACTGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 108, 137
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 185
Bsp143I GATC 2 cut(s) 19, 173
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 185
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 108, 137
BssMI GATC 2 cut(s) 19, 173
BssNAI GTATAC 1 cut(s) 302
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 22, 176
BstMBI GATC 2 cut(s) 19, 173
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 2 cut(s) 19, 173
BstYI RGATCY 2 cut(s) 19, 173
BstZ17I GTATAC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 169
CseI GACGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 93, 186
CviAII CATG 1 cut(s) 311
CviJI RGCY 4 cut(s) 36, 142, 182, 361
CviKI_1 RGCY 4 cut(s) 36, 142, 182, 361
CviQI GTAC 2 cut(s) 93, 186
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 21, 175
DpnII GATC 2 cut(s) 19, 173
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 314
FatI CATG 1 cut(s) 310
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 125, 177, 321
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 72
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 19, 213, 280, 385
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 19, 173
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 150, 223, 278
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 3 cut(s) 125, 177, 321
MalI GATC 2 cut(s) 21, 175
MboI GATC 2 cut(s) 19, 173
MboII GAAGA 1 cut(s) 140
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 2 cut(s) 19, 173
MluCI AATT 4 cut(s) 223, 260, 324, 370
MnlI CCTC 1 cut(s) 87
MseI TTAA 7 cut(s) 44, 53, 144, 191, 234, 273, 327
MslI CAYNNNNRTG 2 cut(s) 53, 201
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 260
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 352
NdeII GATC 2 cut(s) 19, 173
NlaIII CATG 1 cut(s) 314
PkrI GCNGC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 19, 173
RsaI GTAC 2 cut(s) 94, 187
RsaNI GTAC 2 cut(s) 93, 186
RseI CAYNNNNRTG 2 cut(s) 53, 201
SaqAI TTAA 7 cut(s) 44, 53, 144, 191, 234, 273, 327
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 19, 173
ScrFI CCNGG 1 cut(s) 138
SetI ASST 2 cut(s) 184, 322
SmiMI CAYNNNNRTG 2 cut(s) 53, 201
Sse9I AATT 4 cut(s) 223, 260, 324, 370
SspMI CTAG 3 cut(s) 125, 177, 321
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 108
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 223, 260, 324, 370
TatI WGTACW 2 cut(s) 92, 185
Tru1I TTAA 7 cut(s) 44, 53, 144, 191, 234, 273, 327
Tru9I TTAA 7 cut(s) 44, 53, 144, 191, 234, 273, 327
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 71
TspRI CASTG 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 3 cut(s) 125, 177, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.