RLG00000029311

Importin-5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000344
Physical Location & Seq
Forward (+)
36376652 .. 36382414
5763 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029311

Sequence Viewer

Length: 1203 bp
ATGCTCGAGGATGTTGTGGTCGACGGGAGTAAGGCCATGTCAGATACTATCAAGCTGGGATACAATATTTTGAACGGCATGTCGTCTTACTGTGAGGATATCATGTTCGGTGTTGTTTCTAAGATGGTAGAAGTGAATATGGAAGCCAACGAGTGGCGGAAACGATACACAGGAGTCTCTGCTATCAGTGCAGTTGTAGATTCCACCAACAAGAATTTTTCTCCTGCAGCTCCAAGCTGCTTGAGCAATCATCACTTCACCAAGGGCTGCACAGCAGATACTTTAGCACCGTTCTTGAATGACATAGTGGCCAAATTGCTTACACTCCTGGAGGGCCACTTCGATACATGCTATGATATTACTATGGCTTCCTTTCAAGATATCTTGCAGACTGAAACTGATGCCTCTAAAGACATCTGTGCCTATTGTCTTGGATGCATTAGTCATGTTGCAATTGCTGTTGGAAAGGATAAATTTACAAAGGATGCTGCCCAGGTGATAATTCATCTTTATGTCAGGCTTGCACTTTTTGGTGTTGTTGAACCTGTTCAGCTGCCTAGGCCAGGATTTTTCAGTTCATGTCCCAGATCTGATGCCTATGTTCCTTTAGTTTGGTTGGATGCATTAAAGGAGAAAGCTTTGGGTTGCAAAATGTTATCCTGCTGCACTAGTCAGTTCAAGGAAGTTATCTATCCTTGGACCGATCAAGTATCTAGTATTTTGGTTCCACTGCTTCAGGTTAATCTACATTCTGAAACTAGAATGGCTACTGTTTCAGACAGAAAGCACAGTGCTGTTGAAAATGGAGAGCAGGAATATGAGAAAAAGCAAGAGGAAATCCTTAATCAAGTTAGAACTTTCTTGCTTGCAATGCTCGAAAGACTCGAGGCTTCTTTCTTGCCTCATTTTGATGATGTTACATCAAAAATAACAATCATATGGGATGATGATCATGCAGTTAAAGAAAAGATTACTGCCTTTTCCTTTGTTAATGATGTCCCGTCGCACTGCCATGAAGCTGCTTATAAGTATTGTGATATGTATCTACCATTAATCCTCTTTGAAGCTTGCAAGGATGAAAATTCAGATATTGGAAAGGAAGCTGCACTCGGTATTGGTATTTGCGCAGAGTTTGGCATCATTAAGTTCAAAGCTGCTACTGAAGGTAGCATTTTTCCCTGCATAGATGTTGTGAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT

Protein Analysis

401

Amino Acids

44.4

Weight (kDa)

4.94

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
Acc16I TGCGCA 1 cut(s) 1126
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 1 cut(s) 21
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 3 cut(s) 214, 473, 1081
AcuI CTGAAG 2 cut(s) 719, 1182
AfiI CCNNNNNNNGG 2 cut(s) 153, 563
AgsI TTSAA 8 cut(s) 73, 298, 377, 542, 679, 800, 1064, 1150
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 3 cut(s) 327, 492, 562
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 9 cut(s) 55, 230, 237, 553, 638, 1019, 1067, 1103, 1154
AluI AGCT 9 cut(s) 55, 230, 237, 553, 638, 1019, 1067, 1103, 1154
Alw26I GTCTC 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 5, 884
AoxI GGCC 4 cut(s) 33, 309, 334, 560
ApeKI GCWGC 9 cut(s) 227, 237, 267, 488, 553, 663, 1019, 1103, 1154
ApoI RAATTY 3 cut(s) 214, 473, 1081
AseI ATTAAT 1 cut(s) 1052
Asp700I GAANNNNTTC 1 cut(s) 546
AspA2I CCTAGG 1 cut(s) 557
AspLEI GCGC 1 cut(s) 1127
AspS9I GGNCC 2 cut(s) 334, 699
AsuHPI GGTGA 2 cut(s) 250, 508
AvaI CYCGRG 2 cut(s) 5, 884
AvaII GGWCC 1 cut(s) 699
AvrII CCTAGG 1 cut(s) 557
BalI TGGCCA 1 cut(s) 311
BbvI GCAGC 9 cut(s) 224, 239, 254, 475, 540, 650, 1006, 1090, 1141
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 3 cut(s) 329, 494, 564
BciVI GTATCC 1 cut(s) 53
BclI TGATCA 1 cut(s) 949
BcoDI GTCTC 1 cut(s) 181
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 4 cut(s) 558, 669, 714, 759
BfmI CTRYAG 1 cut(s) 225
BfuI GTATCC 1 cut(s) 53
BglII AGATCT 1 cut(s) 587
BisI GCNGC 9 cut(s) 228, 238, 268, 489, 554, 664, 1020, 1104, 1155
BlnI CCTAGG 1 cut(s) 557
BlsI GCNGC 9 cut(s) 229, 239, 269, 490, 555, 665, 1021, 1105, 1156
Bme1390I CCNGG 3 cut(s) 329, 494, 564
Bme18I GGWCC 1 cut(s) 699
BmeT110I CYCGRG 2 cut(s) 5, 884
BmgT120I GGNCC 2 cut(s) 334, 699
BmiI GGNNCC 1 cut(s) 726
BmrFI CCNGG 3 cut(s) 329, 494, 564
BmsI GCATC 6 cut(s) 391, 425, 475, 583, 610, 1146
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 262
BsaBI GATNNNNATC 2 cut(s) 948, 1041
BsaJI CCNNGG 4 cut(s) 261, 492, 557, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 563
Bse3DI GCAATG 1 cut(s) 876
Bse8I GATNNNNATC 2 cut(s) 948, 1041
BseBI CCWGG 3 cut(s) 329, 494, 564
BseDI CCNNGG 4 cut(s) 261, 492, 557, 695
BseGI GGATG 6 cut(s) 16, 440, 490, 625, 949, 1081
BseJI GATNNNNATC 2 cut(s) 948, 1041
BseLI CCNNNNNNNGG 2 cut(s) 153, 563
BseMI GCAATG 1 cut(s) 876
BseXI GCAGC 9 cut(s) 224, 239, 254, 475, 540, 650, 1006, 1090, 1141
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 4 cut(s) 210, 253, 649, 1089
BshFI GGCC 4 cut(s) 35, 311, 336, 562
BsiHKCI CYCGRG 2 cut(s) 5, 884
BslFI GGGAC 2 cut(s) 567, 983
BslI CCNNNNNNNGG 2 cut(s) 153, 563
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 567, 983
BsnI GGCC 4 cut(s) 35, 311, 336, 562
BsoBI CYCGRG 2 cut(s) 5, 884
Bsp143I GATC 3 cut(s) 587, 703, 949
BspACI CCGC 1 cut(s) 157
BspANI GGCC 4 cut(s) 35, 311, 336, 562
BspLI GGNNCC 1 cut(s) 726
BspMAI CTGCAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 876
BssECI CCNNGG 4 cut(s) 261, 492, 557, 695
BssMI GATC 3 cut(s) 587, 703, 949
BssT1I CCWWGG 3 cut(s) 261, 557, 695
Bst2UI CCWGG 3 cut(s) 329, 494, 564
Bst4CI ACNGT 4 cut(s) 92, 291, 772, 791
BstC8I GCNNGC 3 cut(s) 522, 867, 1069
BstDEI CTNAG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 6 cut(s) 16, 440, 490, 625, 949, 1081
BstHHI GCGC 1 cut(s) 1127
BstKTI GATC 3 cut(s) 590, 706, 952
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 3 cut(s) 587, 703, 949
BstMWI GCNNNNNNNGC 4 cut(s) 188, 243, 559, 871
BstNI CCWGG 3 cut(s) 329, 494, 564
BstNSI RCATGY 2 cut(s) 82, 351
BstSCI CCNGG 3 cut(s) 327, 492, 562
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 9 cut(s) 224, 239, 254, 475, 540, 650, 1006, 1090, 1141
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 4 cut(s) 35, 311, 336, 562
BtsCI GGATG 6 cut(s) 16, 440, 490, 625, 949, 1081
BtsI GCAGTG 2 cut(s) 728, 1006
BtsIMutI CAGTG 4 cut(s) 193, 728, 796, 1006
Cac8I GCNNGC 3 cut(s) 522, 867, 1069
CfoI GCGC 1 cut(s) 1127
Cfr13I GGNCC 2 cut(s) 334, 699
CviAII CATG 8 cut(s) 37, 79, 103, 348, 446, 579, 953, 1013
DdeI CTNAG 1 cut(s) 120
DpnI GATC 3 cut(s) 589, 705, 951
DpnII GATC 3 cut(s) 587, 703, 949
EaeI YGGCCR 1 cut(s) 309
EciI GGCGGA 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 261, 557, 695
Eco32I GATATC 2 cut(s) 100, 382
Eco47I GGWCC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 719, 1182
Eco88I CYCGRG 2 cut(s) 5, 884
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRII CCWGG 3 cut(s) 327, 492, 562
EcoRV GATATC 2 cut(s) 100, 382
EcoT14I CCWWGG 3 cut(s) 261, 557, 695
EcoT22I ATGCAT 2 cut(s) 440, 625
ErhI CCWWGG 3 cut(s) 261, 557, 695
FaeI CATG 8 cut(s) 40, 82, 106, 351, 449, 582, 956, 1016
FaqI GGGAC 2 cut(s) 567, 983
FatI CATG 8 cut(s) 36, 78, 102, 347, 445, 578, 952, 1012
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 9 cut(s) 228, 238, 268, 489, 554, 664, 1020, 1104, 1155
FokI GGATG 6 cut(s) 23, 447, 497, 632, 956, 1088
Fsp4HI GCNGC 9 cut(s) 228, 238, 268, 489, 554, 664, 1020, 1104, 1155
FspBI CTAG 4 cut(s) 558, 669, 714, 759
FspI TGCGCA 1 cut(s) 1126
GlaI GCGC 1 cut(s) 1126
GluI GCNGC 9 cut(s) 228, 238, 268, 489, 554, 664, 1020, 1104, 1155
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 35, 311, 336, 562
HhaI GCGC 1 cut(s) 1127
Hin1II CATG 8 cut(s) 40, 82, 106, 351, 449, 582, 956, 1016
Hin6I GCGC 1 cut(s) 1125
HinP1I GCGC 1 cut(s) 1125
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 2 cut(s) 636, 1065
HinfI GANTC 3 cut(s) 174, 200, 882
HphI GGTGA 2 cut(s) 250, 508
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 5 cut(s) 43, 592, 754, 778, 1087
Hpy188III TCNNGA 2 cut(s) 295, 377
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 26, 1006
HpyAV CCTTC 1 cut(s) 1157
HpyCH4III ACNGT 4 cut(s) 92, 291, 772, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 243, 559, 871
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 8 cut(s) 40, 82, 106, 351, 449, 582, 956, 1016
HspAI GCGC 1 cut(s) 1125
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 3 cut(s) 587, 703, 949
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 9 cut(s) 224, 239, 254, 475, 540, 650, 1006, 1090, 1141
LweI GCATC 6 cut(s) 391, 425, 475, 583, 610, 1146
MaeI CTAG 4 cut(s) 558, 669, 714, 759
MaeIII GTNAC 1 cut(s) 916
MalI GATC 3 cut(s) 589, 705, 951
MboI GATC 3 cut(s) 587, 703, 949
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 587
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 6 cut(s) 214, 314, 453, 473, 501, 1081
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 2 cut(s) 183, 876
MmeI TCCRAC 2 cut(s) 442, 597
MnlI CCTC 7 cut(s) 88, 325, 415, 826, 880, 912, 1067
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 2 cut(s) 440, 625
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 311
MseI TTAA 7 cut(s) 626, 741, 843, 960, 990, 1052, 1143
MslI CAYNNNNRTG 3 cut(s) 510, 909, 1011
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 553
MspR9I CCNGG 3 cut(s) 329, 494, 564
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 3 cut(s) 329, 494, 564
MwoI GCNNNNNNNGC 4 cut(s) 188, 243, 559, 871
NdeI CATATG 1 cut(s) 938
NdeII GATC 3 cut(s) 587, 703, 949
NlaIII CATG 8 cut(s) 40, 82, 106, 351, 449, 582, 956, 1016
NlaIV GGNNCC 1 cut(s) 726
NsbI TGCGCA 1 cut(s) 1126
NsiI ATGCAT 2 cut(s) 440, 625
NspI RCATGY 2 cut(s) 82, 351
PaeR7I CTCGAG 2 cut(s) 5, 884
PcsI WCGNNNNNNNCGW 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 9 cut(s) 229, 239, 269, 490, 555, 665, 1021, 1105, 1156
PleI GAGTC 2 cut(s) 182, 876
PpsI GAGTC 2 cut(s) 182, 876
PshBI ATTAAT 1 cut(s) 1052
PsiI TTATAA 1 cut(s) 1026
Psp6I CCWGG 3 cut(s) 327, 492, 562
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 3 cut(s) 327, 492, 562
PspN4I GGNNCC 1 cut(s) 726
PspPI GGNCC 2 cut(s) 334, 699
PspXI VCTCGAGB 2 cut(s) 5, 884
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 553
RseI CAYNNNNRTG 3 cut(s) 510, 909, 1011
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 7 cut(s) 626, 741, 843, 960, 990, 1052, 1143
SatI GCNGC 9 cut(s) 228, 238, 268, 489, 554, 664, 1020, 1104, 1155
Sau3AI GATC 3 cut(s) 587, 703, 949
Sau96I GGNCC 2 cut(s) 334, 699
SchI GAGTC 2 cut(s) 183, 876
ScrFI CCNGG 3 cut(s) 329, 494, 564
SfaNI GCATC 6 cut(s) 391, 425, 475, 583, 610, 1146
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 2 cut(s) 5, 884
SinI GGWCC 1 cut(s) 699
SlaI CTCGAG 2 cut(s) 5, 884
SmiMI CAYNNNNRTG 3 cut(s) 510, 909, 1011
SmlI CTYRAG 3 cut(s) 5, 241, 884
SmoI CTYRAG 3 cut(s) 5, 241, 884
SpeI ACTAGT 1 cut(s) 668
Sse9I AATT 6 cut(s) 214, 314, 453, 473, 501, 1081
SsiI CCGC 1 cut(s) 157
SspI AATATT 1 cut(s) 67
SspMI CTAG 4 cut(s) 558, 669, 714, 759
StyD4I CCNGG 3 cut(s) 327, 492, 562
StyI CCWWGG 3 cut(s) 261, 557, 695
TaaI ACNGT 4 cut(s) 92, 291, 772, 791
TaqI TCGA 5 cut(s) 6, 21, 342, 876, 885
TaqII GACCGA 1 cut(s) 716
TasI AATT 6 cut(s) 214, 314, 453, 473, 501, 1081
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 7 cut(s) 626, 741, 843, 960, 990, 1052, 1143
Tru9I TTAA 7 cut(s) 626, 741, 843, 960, 990, 1052, 1143
TscAI CASTG 4 cut(s) 193, 735, 796, 1013
TseI GCWGC 9 cut(s) 227, 237, 267, 488, 553, 663, 1019, 1103, 1154
TspDTI ATGAA 4 cut(s) 494, 567, 1029, 1092
TspRI CASTG 4 cut(s) 193, 735, 796, 1013
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 699
VspI ATTAAT 1 cut(s) 1052
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 3 cut(s) 214, 473, 1081
XceI RCATGY 2 cut(s) 82, 351
XhoI CTCGAG 2 cut(s) 5, 884
XmaJI CCTAGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 4 cut(s) 558, 669, 714, 759
Zsp2I ATGCAT 2 cut(s) 440, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.