RLG00000023521

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
24836511 .. 24836955
445 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023521

Sequence Viewer

Length: 357 bp
ATGGCCGAGTCGATTCAGCTCCAGCAGTCGCCACTCGTGACGGTTCTCGGCCCCGACCCGGCCCCTTTCGAAATTATAAACTTCCACTTGATTTCCTCCGACAACGAGCAACGATCCAGGCTGAGCCCTCTTCAATCTCTGCAAGCAGACCGATCTGACTCGCTCTCAGTCAAAGTCGCTCATCTCCTCCATTTCTCGCTGGCGCAGGAGGCCCGGGCCATGTTCGTCATTCTCCTCCGTAAGCAGCTCACCCACGACAACTCCTTTCTCTGGCCCAGGCTCTCTCCGATGATGCAGTCCAACCCTCGACGATCTCTTGTCTTAAATGTTGGTCATATAAAATGTAAATTATTATAG

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

9.61

Isoelectric Point (pI)

74.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 58, 270
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 2 cut(s) 116, 275
AluBI AGCT 2 cut(s) 19, 247
AluI AGCT 2 cut(s) 19, 247
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 6 cut(s) 3, 49, 60, 210, 216, 272
ApeKI GCWGC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 5 cut(s) 50, 61, 211, 216, 273
AsuC2I CCSGG 3 cut(s) 59, 214, 215
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 213
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 1 cut(s) 35
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 118, 277
BcnI CCSGG 3 cut(s) 59, 214, 215
BisI GCNGC 1 cut(s) 245
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 5 cut(s) 59, 118, 214, 215, 277
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 5 cut(s) 50, 61, 211, 216, 273
BmiI GGNNCC 2 cut(s) 52, 63
BmrFI CCNGG 5 cut(s) 59, 118, 214, 215, 277
BmsI GCATC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 69
BpuMI CCSGG 3 cut(s) 59, 214, 215
BsaJI CCNNGG 2 cut(s) 213, 275
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 270
BseBI CCWGG 2 cut(s) 118, 277
BseDI CCNNGG 2 cut(s) 213, 275
BseLI CCNNNNNNNGG 2 cut(s) 58, 270
BseMII CTCAG 2 cut(s) 113, 180
BseRI GAGGAG 2 cut(s) 176, 224
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 6 cut(s) 5, 51, 62, 212, 218, 274
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 59, 214
BslI CCNNNNNNNGG 2 cut(s) 58, 270
BsnI GGCC 6 cut(s) 5, 51, 62, 212, 218, 274
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 113, 152, 311
Bsp1720I GCTNAGC 1 cut(s) 122
BspANI GGCC 6 cut(s) 5, 51, 62, 212, 218, 274
BspCNI CTCAG 2 cut(s) 114, 179
BspLI GGNNCC 2 cut(s) 52, 63
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 213, 275
BssMI GATC 3 cut(s) 113, 152, 311
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 118, 277
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 144, 201
BstDEI CTNAG 2 cut(s) 122, 166
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 3 cut(s) 116, 155, 314
BstMBI GATC 3 cut(s) 113, 152, 311
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 118, 277
BstSCI CCNGG 5 cut(s) 57, 116, 212, 213, 275
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 6 cut(s) 5, 51, 62, 212, 218, 274
Cac8I GCNNGC 2 cut(s) 144, 201
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 5 cut(s) 50, 61, 211, 216, 273
Cfr9I CCCGGG 1 cut(s) 213
CviAII CATG 1 cut(s) 220
DdeI CTNAG 2 cut(s) 122, 166
DpnI GATC 3 cut(s) 115, 154, 313
DpnII GATC 3 cut(s) 113, 152, 311
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 116, 275
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 77, 221, 336, 338, 355
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 245
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 6 cut(s) 5, 51, 62, 212, 218, 274
HapII CCGG 2 cut(s) 59, 214
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 3 cut(s) 8, 13, 158
HpaII CCGG 2 cut(s) 59, 214
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 100, 157, 288
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 312
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 142, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 122, 166
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 3 cut(s) 113, 152, 311
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 115, 154, 313
MboI GATC 3 cut(s) 113, 152, 311
MboII GAAGA 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 72, 347
MlyI GAGTC 2 cut(s) 17, 152
MmeI TCCRAC 2 cut(s) 123, 324
MnlI CCTC 6 cut(s) 106, 138, 197, 202, 245, 315
MseI TTAA 1 cut(s) 323
MspI CCGG 2 cut(s) 59, 214
MspR9I CCNGG 5 cut(s) 59, 118, 214, 215, 277
MvaI CCWGG 2 cut(s) 118, 277
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 3 cut(s) 59, 214, 215
NdeII GATC 3 cut(s) 113, 152, 311
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 52, 63
NmeAIII GCCGAG 2 cut(s) 27, 31
NmuCI GTSAC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 69
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 2 cut(s) 16, 152
PpsI GAGTC 2 cut(s) 16, 152
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 116, 275
PspGI CCWGG 2 cut(s) 116, 275
PspN4I GGNNCC 2 cut(s) 52, 63
PspPI GGNCC 5 cut(s) 50, 61, 211, 216, 273
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 113, 152, 311
Sau96I GGNCC 5 cut(s) 50, 61, 211, 216, 273
SchI GAGTC 2 cut(s) 17, 152
ScrFI CCNGG 5 cut(s) 59, 118, 214, 215, 277
SduI GDGCHC 1 cut(s) 128
SetI ASST 2 cut(s) 21, 249
SfaNI GCATC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 69
SmaI CCCGGG 1 cut(s) 215
SrfI GCCCGGGC 1 cut(s) 215
Sse9I AATT 2 cut(s) 72, 347
StyD4I CCNGG 5 cut(s) 57, 116, 212, 213, 275
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 3 cut(s) 11, 69, 307
TaqII GACCGA 1 cut(s) 165
TasI AATT 2 cut(s) 72, 347
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 227
TspMI CCCGGG 1 cut(s) 213
XmaI CCCGGG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.