Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

19124591 .. 19125208

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTCGAGTCGACTCAGCTCCAGCTTCAACTTGAGCAAGTTGCGACGATTCTTGGCCCCGACCCCGTCGCTTCTTTCAAAACCCTAATCTCCTACCTCCTTTGCCCCTCCTATTTTGAAAGCCTAATCTCCTCCCTCTTCTCCTCCAATTCCGAGCAGCGATCCCGGGCCGAGCTCGTTTATAATATCTGCAAAAACGAAGCGAGTGTTAGAGCTGTGCTTGGTTTTGAATTTGCAGAGTTCAGGCAAGTCGTCGTCTTCGTGAGGTCTACTGATTTTGAATTCTTCCAAGAGGACCAATGCGATTTTGAATTCTTCCAAGAGGATCAATGCGATTTTGCGCTGTTGAGGAATAGTATTGGGGAAGGAAAAAAAAATGAACATGTAGAATTGAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

134

Amino Acids

15.29

Weight (kDa)

4.39

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AccI	GTMKAC	2 cut(s)	11, 269
AclWI	GGATC	2 cut(s)	156, 333
AcsI	RAATTY	3 cut(s)	230, 281, 311
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	7 cut(s)	29, 79, 119, 230, 281, 311, 394
AluBI	AGCT	4 cut(s)	19, 25, 175, 215
AluI	AGCT	4 cut(s)	19, 25, 175, 215
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	156, 333
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	55, 168
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	230, 281, 311
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	3 cut(s)	56, 168, 295
AsuC2I	CCSGG	2 cut(s)	166, 167
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	166, 167
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	166, 167
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	56, 168, 295
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	166, 167
BpiI	GAAGAC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	166, 167
BsaJI	CCNNGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	121, 133
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	57, 170
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	166
BsnI	GGCC	2 cut(s)	57, 170
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	161, 325
BspANI	GGCC	2 cut(s)	57, 170
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	156, 333
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	161, 325
Bst6I	CTCTTC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	164, 328
BstMBI	GATC	2 cut(s)	161, 325
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	164, 165
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	57, 170
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	3 cut(s)	56, 168, 295
Cfr9I	CCCGGG	1 cut(s)	165
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	7 cut(s)	19, 25, 57, 123, 170, 175, 215
CviKI_1	RGCY	7 cut(s)	19, 25, 57, 123, 170, 175, 215
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	163, 327
DpnII	GATC	2 cut(s)	161, 325
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	175
EcoRI	GAATTC	2 cut(s)	281, 311
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	1 cut(s)	386
FaiI	YATR	4 cut(s)	183, 384, 398, 400
FatI	CATG	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	11, 269
Fnu4HI	GCNGC	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	158
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	57, 170
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	386
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	8, 13, 49
HpaII	CCGG	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	12, 270
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	2 cut(s)	12, 270
Hpy99I	CGWCG	3 cut(s)	49, 71, 257
HpyAV	CCTTC	1 cut(s)	359
HpyCH4V	TGCA	2 cut(s)	192, 236
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	386
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	161, 325
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	35, 179, 229
Lsp1109I	GCAGC	1 cut(s)	169
MalI	GATC	2 cut(s)	163, 327
MboI	GATC	2 cut(s)	161, 325
MboII	GAAGA	4 cut(s)	130, 250, 277, 307
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	5 cut(s)	148, 230, 281, 311, 389
MlyI	GAGTC	2 cut(s)	7, 17
MnlI	CCTC	9 cut(s)	107, 118, 142, 146, 154, 258, 286, 316, 342
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	166, 167
NciI	CCSGG	2 cut(s)	166, 167
NdeII	GATC	2 cut(s)	161, 325
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	196
NspI	RCATGY	1 cut(s)	386
PciI	ACATGT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	2 cut(s)	7, 16
PpsI	GAGTC	2 cut(s)	7, 16
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	3 cut(s)	56, 168, 295
PsyI	GACNNNGTC	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	161, 325
Sau96I	GGNCC	3 cut(s)	56, 168, 295
SchI	GAGTC	2 cut(s)	7, 17
ScrFI	CCNGG	2 cut(s)	166, 167
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	6 cut(s)	21, 27, 99, 177, 217, 269
SinI	GGWCC	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	148, 230, 281, 311, 389
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	164, 165
TaqI	TCGA	2 cut(s)	6, 11
TasI	AATT	5 cut(s)	148, 230, 281, 311, 389
TfiI	GAWTC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	393
TspMI	CCCGGG	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	230, 281, 311
XceI	RCATGY	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	165
XmiI	GTMKAC	2 cut(s)	11, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.