RLG00000034357

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
41295697 .. 41296005
309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034357

Sequence Viewer

Length: 309 bp
ATGGCCGAGTCGACTCAACTCCAGCAGTCGCCACTCACGACGGTTCTCGGCCCCGACCCGGCCCCTTTCGAAATCATAAACTTCCACTTGATTTCCTCCAATAACAAGCAACGATCCAGGCCGAGCCCTCTTCAATCTCTGCAAGCAAACCGATCTGACTCGCTCTCAGTCAAACTCGCTCACCTCTTCCAGTTCTCGCCGGCGCAGGAGGCCCGGGCCATGTCCGCCATTCTCCTCCTCAAGCAGCTCACCCACGACGACTCCTTTCTCTGGCCCAAGCTCTCTCTGACGACGCAGCCCAACCCGTGA

Protein Analysis

103

Amino Acids

11.33

Weight (kDa)

8.25

Isoelectric Point (pI)

86.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 58, 270
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 247, 280
AluI AGCT 2 cut(s) 247, 280
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 7 cut(s) 3, 49, 60, 119, 210, 216, 272
ApeKI GCWGC 2 cut(s) 244, 295
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 5 cut(s) 50, 61, 211, 216, 273
AsuC2I CCSGG 3 cut(s) 59, 214, 215
AsuHPI GGTGA 2 cut(s) 173, 241
AsuII TTCGAA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 213
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 3 cut(s) 59, 214, 215
BisI GCNGC 2 cut(s) 245, 296
BlsI GCNGC 2 cut(s) 246, 297
Bme1390I CCNGG 4 cut(s) 59, 118, 214, 215
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 5 cut(s) 50, 61, 211, 216, 273
BmiI GGNNCC 2 cut(s) 52, 63
BmrFI CCNGG 4 cut(s) 59, 118, 214, 215
BpmI CTGGAG 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 3 cut(s) 59, 214, 215
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 270
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 58, 270
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 224, 227
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 7 cut(s) 5, 51, 62, 121, 212, 218, 274
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 3 cut(s) 59, 200, 214
BslI CCNNNNNNNGG 2 cut(s) 58, 270
BsnI GGCC 7 cut(s) 5, 51, 62, 121, 212, 218, 274
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 113, 152
BspACI CCGC 1 cut(s) 225
BspANI GGCC 7 cut(s) 5, 51, 62, 121, 212, 218, 274
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 52, 63
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 113, 152
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 135, 191
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 144, 201
BstDEI CTNAG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 2 cut(s) 116, 155
BstMBI GATC 2 cut(s) 113, 152
BstMWI GCNNNNNNNGC 2 cut(s) 209, 224
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 4 cut(s) 57, 116, 212, 213
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 7 cut(s) 5, 51, 62, 121, 212, 218, 274
Cac8I GCNNGC 2 cut(s) 144, 201
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 5 cut(s) 50, 61, 211, 216, 273
Cfr9I CCCGGG 1 cut(s) 213
CseI GACGC 1 cut(s) 301
CviAII CATG 1 cut(s) 220
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 115, 154
DpnII GATC 2 cut(s) 113, 152
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 135, 191
EarI CTCTTC 2 cut(s) 135, 191
EciI GGCGGA 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 77, 221
FatI CATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 2 cut(s) 245, 296
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 245, 296
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 245, 296
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 7 cut(s) 5, 51, 62, 121, 212, 218, 274
HapII CCGG 3 cut(s) 59, 200, 214
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 4 cut(s) 8, 13, 158, 260
HpaII CCGG 3 cut(s) 59, 200, 214
HphI GGTGA 2 cut(s) 173, 241
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 157, 288
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 3 cut(s) 43, 260, 295
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 224
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 113, 152
LpnPI CCDG 9 cut(s) 35, 72, 103, 130, 191, 203, 213, 227, 256
Lsp1109I GCAGC 1 cut(s) 256
MalI GATC 2 cut(s) 115, 154
MboI GATC 2 cut(s) 113, 152
MboII GAAGA 2 cut(s) 122, 178
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 4 cut(s) 7, 17, 152, 254
MnlI CCTC 6 cut(s) 106, 138, 194, 202, 245, 248
MreI CGCCGGCG 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 199
MspI CCGG 3 cut(s) 59, 200, 214
MspR9I CCNGG 4 cut(s) 59, 118, 214, 215
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 209, 224
NaeI GCCGGC 1 cut(s) 201
NciI CCSGG 3 cut(s) 59, 214, 215
NdeII GATC 2 cut(s) 113, 152
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 52, 63
NmeAIII GCCGAG 3 cut(s) 27, 31, 147
NspV TTCGAA 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 201
PkrI GCNGC 2 cut(s) 246, 297
PleI GAGTC 4 cut(s) 7, 16, 152, 254
PpsI GAGTC 4 cut(s) 7, 16, 152, 254
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 52, 63
PspPI GGNCC 5 cut(s) 50, 61, 211, 216, 273
SalI GTCGAC 1 cut(s) 10
SatI GCNGC 2 cut(s) 245, 296
Sau3AI GATC 2 cut(s) 113, 152
Sau96I GGNCC 5 cut(s) 50, 61, 211, 216, 273
SchI GAGTC 4 cut(s) 7, 17, 152, 254
ScrFI CCNGG 4 cut(s) 59, 118, 214, 215
SduI GDGCHC 1 cut(s) 128
SetI ASST 3 cut(s) 186, 249, 282
SfuI TTCGAA 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 199
SmaI CCCGGG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SrfI GCCCGGGC 1 cut(s) 215
SsiI CCGC 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 57, 116, 212, 213
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 11, 69
TseI GCWGC 2 cut(s) 244, 295
TspMI CCCGGG 1 cut(s) 213
XmaI CCCGGG 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.