Rw1G008740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000344
Physical Location & Seq
Forward (+)
19063549 .. 19065794
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008740.1

Sequence Viewer

Length: 231 bp
ATGATAACCCAACCAAAAAATAACACAGTTTACCATGATAGATTGATGTATCCAAAAGCAATTGCGTCCCACATTATTAGTCGGAAAAAGGAGATCATGAATGTGTATGGGGTCGATGCTAAATGGAATGACCCAACACAATGTTGCAGCCTTGGTGGTCGTGAAACCTGGAGAGCAAAATCCATTGCAGGAATCATAACAGAGAGAGGAGCCATTTGTGCTGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.48

Weight (kDa)

9.41

Isoelectric Point (pI)

19.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 169
BciVI GTATCC 1 cut(s) 60
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 28
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 60
CciI TCATGA 1 cut(s) 96
CseI GACGC 1 cut(s) 54
CviAII CATG 2 cut(s) 35, 97
CviJI RGCY 2 cut(s) 150, 212
CviKI_1 RGCY 2 cut(s) 150, 212
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 38, 100
FaiI YATR 5 cut(s) 36, 98, 108, 197, 229
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 34, 96
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 190
HgaI GACGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 38, 100
HinfI GANTC 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 97, 161
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 147, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 38, 100
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 154, 174, 181, 207
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 106
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MfeI CAATTG 1 cut(s) 60
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 38, 100
NlaIV GGNNCC 1 cut(s) 211
PagI TCATGA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 101
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 169
SetI ASST 1 cut(s) 170
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 7 cut(s) 47, 109, 164, 173, 180, 181, 201
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 192
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.