Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Reverse (-)

351924 .. 360265

Gene Structure 8342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGGCCGAGTCGACTCAGTTACAGCAAGCCCAACTGGCGACGATTCTCGGTCCCGACCCGGCCCCTTTCCAAACCCTGATCTCCCACCTCATGTCTTCCGCCAACGATCAGCGCTCCCAGGCGGAGCTCCTCTTCAACCTCTGCAAGCAGACCGATCCCGACTCCCTCTCCCTCAAGCTCGCCCACCTCATCCAGTTCTCCCCCGCCGCCGAGGCCCGCGCCATGTCCGCGATTTCTCTCCCGCAAGCAGCTCACCCGCAACGACTCGTATCTCTGGCCCCGATTGAATCCGACGACCCAATCAACGCTGAAGACGATTCTGCTGACGTGTTTCAGGACCTGTTGCCGGCGATGATGAAGACGTTGATGGAGGCTCTGAACAACGGGAACGAAGCCACCGCGCAGGACGCTCTTGAATTGTTGATTGAATTGGCTGGGACTGAGCCGAGGTTCCTAAGGCGGCAGATTGTGGAAGTCGTTGGCGCAATGTTACAGATTGCTGAGGCCGATTCCTTGGAAGAATCAACAAGGCACTTGGCCATTGAGTTCGTCATCACTCTGGCTGAGGCCAGAGAGCGTGCTCCTGGCATGATGAGGAAGTTGCCGCAGTTTATAAGCCGATTGTTTGCCATTTTAATGAAAATGCTTCTGGATATTGAGGACGAACCGGCATGGCATGCGGCAGAGAGTGAAGATGAGGATGCCGGTGAGACCACTAATTACAGTGTTGGTCAAGAGTGTTTGGATCGGCTTTCGATTTCCCTTGGTGGGAATACCATAGTTCCAGTAGCTTCTGAGCAATTGCCTGCATATTTGGTTGCCCCTGAGTGGCAGAAGCACCATGCTGCATTGATTGCCCTTGCTCAGATTGCTGAGGGTTGTGCTAAGGTAATGATTAAAAATTTGGAGCAAGTGGTAGCAATGGTCTTGAACTCTTTTCAAGATCCACATCCTCGTGTAAGGTGGGCAGCGATTAATGCAATTGGGCAGTTGTCTACTGATTTGGGCCCAGATCTGCAAGTTCAATATCACCAAAGTGTGCTCCCAGCATTGGCTGGAGCTATGGATGATTTTCAGAACCCTCGTGTTCAGGCACATGCTGCTTCGGCTGTGCTGAATTTCAGTGAGAATTGCACTCCGGATATTTTAACACCGTATTTGGATGGAGTAGTGAGCAAATTGCTTGTACTTCTGCAGAACGGAAAACAAATGGTGCAAGAGGGTGCCTTGACTGCTTTGGCATCCGTTGCTGATTCATCTCAGGAGCATTTTCAAAAATATTATGATGCAGTTATGCCTTACCTGAAAGCTATCTTGGTGAATGCCACTGATAAGTCTAATCGCATGCTTCGTGCCAAATCGATGGAGTGTATTAGTTTGGTTGGAATGGCAGTTGGAAAAGAGAAATTCAGGGAAGACGCTAAGCAAGTCATGGAAGTGCTGATGGCTTTGCAAGGATCTCACATGGAGACGGATGATCCAACTACAAGTTACATGTTACAAGCCTGGGCTAGACTCTGCAAGTGCTTAGGACAAGATTTCCTCCCATATATGAGTGTTGTAATGCCTCCTTTGCTTCAGTCTGCTCAACTTAAGCCAGATGTAACCATCACATCTGCAGATGACGACAATGATATTGATGACTCTGATGATGATAGTATGGAAACAATTACTCTTGGGGATAAAAGGATTGGAATCAAGACTAGTGTCTTGGAGGAGAAAGCTACAGCTTGCAATATGCTGTGTTGCTATGCTGATGAGCTGAAAGAAGGATTCTTTCCCTGGATTGATCAGGTTGCCCCCACTTTGGTTCCACTTCTTAAATTTTATTTCCATGAAGAAGTTAGGAAGGCAGCTGTTTCAGCAATGCCGGAGCTACTGCGTTCTGCAAAGTTAGCTATAGAGAAAGGCCAAGCTCAAGGTCGTAACGAAACATATATAAAGCAATTGTCTGACTACATTGTTCCAGCTCTTGTGGAAGCATTACATAAGGAACCTGATACTGAAATCTGTGCAAATATATTGGATGCATTAAATGAATGCTTACAGACATCTGGACCACTTTTAGATGAAAGCCAGGTCAAATCCATTGTGGAGGAGATAAAGCAGGTGATCACTGCCAGCTCCAGTAGAAAAAGAGAGAGAGCGGAAAGGACCAAAGCAGAAGACTTTGATGCTGAGGAACAGGAGCTGATTAAAGAGGAAAATGAACAAGAGGAAGAAGTTTTTGATCAAGTGGGAGAGATCATTGGAACTTTGATTAAAACGTTTAAAGCCTCTTTCTTGCCTTTCTTTGATGAGCTAGCATTGTATTTAACGCCTATGTGGGCCAAGGATAAAACACCTGAAGAGAGAAGGATTGCAATATGCATCTTTGATGAAGTTGCAGAGCAGTGTCGTGAAGCAGCTGTAAAATATTATGACACATTTCTTCCTTTTCTGTTGGAGGCTTGCAATGACGAAAACCCTGATGTTCGACAGGCAGCTGTATATGGGCTTGGTGTTTGTTCAGAGTTTGGTGGAGCAGTAATTAAACCTCTCGTTGGCGAGGCTCTATCAAGGCTGAACGCTGTCATCCAGCATCCTAACGCCCAACAATCTGAAAATGTAATGGCATATGATAATGCTATTTCTGCTTTAGGAAAAATTAGCCAATTCCACCGTGACAGTATTGATGCAGCTCAGGTCATTCCTGCTTGGTTGAACTGTTTACCGATTAAAGGTGACTTGGTTGAAGCCAAAGTTGTTCATGAACAACTTTGTTCTATGGTAGAGAGGTCTGATCGGGAACTTTTGGGTCCCAACAATCAGTATCTTCCCAAAATTGTTGCAGTGTTTGCAGAGGTTCTATGTGCCGGTAAGGATCTAGCAACAGAACAAACTGCAAGCCGAATGATTAATTTGTTAAAGCAGCTTCAGCAGACGTTGCCACCAGCTACATTGGCCTCAACGTGGTCGTCCTTGCAACCCCAACAACAGCTTGCACTGCAATCTATCCTCTCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0001101 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042221 GO:0042277 GO:0042306 GO:0042307 GO:0042886 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046822 GO:0046824 GO:0046907 GO:0048518 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051169 GO:0051170 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070727 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0072594 GO:0090087 GO:0090316 GO:1900180 GO:1900182 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_2 HEAT_EZ

Protein Analysis

1003

Amino Acids

110.56

Weight (kDa)

4.61

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_IPO5	PF25780	104 - 160	5e-06	IPO5-like, TPR repeats
Importin_rep_4	PF18808	171 - 262	1.5e-21	Importin repeat
HEAT_2	PF13646	274 - 370	3.6e-06	HEAT repeats
HEAT_EZ	PF13513	277 - 331	3.7e-08	HEAT-like repeat
TOR1L1_N	PF24714	287 - 479	2.2e-08	TORTIFOLIA1 N-terminal
HEAT_EZ	PF13513	361 - 415	1.2e-06	HEAT-like repeat
TPR_IMB1	PF25574	383 - 533	3.3e-11	Importin subunit beta-1-like, TPR repeats
Importin_rep_6	PF18829	671 - 773	1.2e-19	Importin repeat 6
HEAT_EZ	PF13513	782 - 834	6.4e-08	HEAT-like repeat
HEAT	PF02985	810 - 838	2.1e-06	HEAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	614
AarI	CACCTGC	1 cut(s)	2098
Acc36I	ACCTGC	1 cut(s)	2098
AccB1I	GGYRCC	1 cut(s)	1223
AccBSI	CCGCTC	1 cut(s)	2147
AccI	GTMKAC	2 cut(s)	11, 995
AccII	CGCG	3 cut(s)	219, 230, 401
AccIII	TCCGGA	1 cut(s)	1138
AclI	AACGTT	1 cut(s)	2267
AclWI	GGATC	6 cut(s)	149, 753, 938, 1465, 1472, 2871
AcoI	YGGCCR	2 cut(s)	3, 537
AcsI	RAATTY	4 cut(s)	901, 1117, 1406, 1823
AcuI	CTGAAG	4 cut(s)	330, 1562, 2367, 2900
AfaI	GTAC	1 cut(s)	1188
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	8 cut(s)	346, 768, 828, 1051, 1807, 2543, 2720, 2952
AflII	CTTAAG	1 cut(s)	1592
AflIII	ACRYGT	2 cut(s)	327, 1494
AhlI	ACTAGT	1 cut(s)	1703
AjiI	CACGTC	1 cut(s)	328
AjnI	CCWGG	5 cut(s)	117, 583, 1505, 1781, 2076
AjuI	GAANNNNNNNTTGG	2 cut(s)	1298, 1330
AleI	CACNNNNGTG	1 cut(s)	1035
Alw21I	GWGCWC	3 cut(s)	129, 583, 1044
Alw26I	GTCTC	2 cut(s)	704, 1463
AlwI	GGATC	6 cut(s)	149, 753, 938, 1465, 1472, 2871
AlwNI	CAGNNNCTG	2 cut(s)	340, 2191
Aor13HI	TCCGGA	1 cut(s)	1138
Aor51HI	AGCGCT	1 cut(s)	113
ApaI	GGGCCC	1 cut(s)	1010
ApeKI	GCWGC	9 cut(s)	248, 845, 968, 1100, 1853, 2405, 2483, 2678, 2911
ApoI	RAATTY	4 cut(s)	901, 1117, 1406, 1823
AseI	ATTAAT	2 cut(s)	975, 2898
AspLEI	GCGC	4 cut(s)	114, 221, 403, 485
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	6 cut(s)	245, 719, 1022, 1330, 2122, 2735
AsuNHI	GCTAGC	1 cut(s)	2302
AvaII	GGWCC	5 cut(s)	50, 337, 2057, 2154, 2798
AxyI	CCTNAGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	1010
BalI	TGGCCA	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	1223
BanII	GRGCYC	2 cut(s)	129, 1010
BauI	CACGAG	2 cut(s)	954, 1083
BbsI	GAAGAC	5 cut(s)	87, 318, 365, 1422, 2172
Bbv12I	GWGCWC	3 cut(s)	129, 583, 1044
BbvCI	CCTCAGC	4 cut(s)	501, 564, 873, 2178
BbvI	GCAGC	9 cut(s)	260, 832, 980, 1087, 1865, 2417, 2495, 2690, 2923
BccI	CCATC	5 cut(s)	361, 1157, 1357, 1438, 1616
BciT130I	CCWGG	5 cut(s)	119, 585, 1507, 1783, 2078
BclI	TGATCA	3 cut(s)	1789, 2112, 2230
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	704, 1463
BcuI	ACTAGT	1 cut(s)	1703
BfaI	CTAG	4 cut(s)	1512, 1704, 2303, 2867
BfmI	CTRYAG	4 cut(s)	1193, 1617, 1725, 1899
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	1592
BfuAI	ACCTGC	1 cut(s)	2098
BglI	GCCNNNNNGGC	2 cut(s)	35, 212
BglII	AGATCT	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	1422
Bme1390I	CCNGG	6 cut(s)	59, 119, 585, 1507, 1783, 2078
Bme18I	GGWCC	5 cut(s)	50, 337, 2057, 2154, 2798
BmgBI	CACGTC	1 cut(s)	328
BmrFI	CCNGG	6 cut(s)	59, 119, 585, 1507, 1783, 2078
BmsI	GCATC	8 cut(s)	691, 1250, 1276, 2017, 2164, 2379, 2590, 2665
BmtI	GCTAGC	1 cut(s)	2306
BoxI	GACNNNNGTC	1 cut(s)	1706
BpiI	GAAGAC	5 cut(s)	87, 318, 365, 1422, 2172
BpmI	CTGGAG	2 cut(s)	1077, 2110
Bpu10I	CCTNAGC	7 cut(s)	501, 564, 873, 885, 1528, 2178, 2682
Bpu1102I	GCTNAGC	1 cut(s)	1422
BpuEI	CTTGAG	2 cut(s)	158, 1902
BpuMI	CCSGG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	1361
BsaBI	GATNNNNATC	2 cut(s)	948, 1694
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	8 cut(s)	117, 210, 446, 513, 763, 1506, 1781, 2331
BsaWI	WCCGGW	1 cut(s)	1138
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	8 cut(s)	346, 768, 828, 1051, 1807, 2543, 2720, 2952
Bse118I	RCCGGY	4 cut(s)	346, 667, 704, 2855
Bse1I	ACTGG	4 cut(s)	39, 193, 785, 2127
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	4 cut(s)	492, 927, 1872, 2461
Bse8I	GATNNNNATC	2 cut(s)	948, 1694
BseAI	TCCGGA	1 cut(s)	1138
BseBI	CCWGG	5 cut(s)	119, 585, 1507, 1783, 2078
BseCI	ATCGAT	1 cut(s)	1361
BseDI	CCNNGG	8 cut(s)	117, 210, 446, 513, 763, 1506, 1781, 2331
BseJI	GATNNNNATC	2 cut(s)	948, 1694
BseLI	CCNNNNNNNGG	8 cut(s)	346, 768, 828, 1051, 1807, 2543, 2720, 2952
BseMI	GCAATG	4 cut(s)	492, 927, 1872, 2461
BseNI	ACTGG	4 cut(s)	39, 193, 785, 2127
BseRI	GAGGAG	4 cut(s)	119, 1730, 2111, 2992
BseSI	GKGCMC	1 cut(s)	1010
BseXI	GCAGC	9 cut(s)	260, 832, 980, 1087, 1865, 2417, 2495, 2690, 2923
BseYI	CCCAGC	2 cut(s)	434, 1045
Bsh1236I	CGCG	3 cut(s)	219, 230, 401
BshNI	GGYRCC	1 cut(s)	1223
BshVI	ATCGAT	1 cut(s)	1361
BsiHKAI	GWGCWC	3 cut(s)	129, 583, 1044
BsiSI	CCGG	7 cut(s)	59, 347, 668, 705, 1139, 1871, 2856
BslFI	GGGAC	3 cut(s)	36, 451, 2784
BslI	CCNNNNNNNGG	8 cut(s)	346, 768, 828, 1051, 1807, 2543, 2720, 2952
BsmAI	GTCTC	2 cut(s)	704, 1463
BsmBI	CGTCTC	1 cut(s)	1463
BsmFI	GGGAC	3 cut(s)	36, 451, 2784
BsmI	GAATGC	2 cut(s)	1327, 2045
Bso31I	GGTCTC	1 cut(s)	704
Bsp120I	GGGCCC	1 cut(s)	1006
Bsp1286I	GDGCHC	4 cut(s)	129, 583, 1010, 1044
Bsp13I	TCCGGA	1 cut(s)	1138
Bsp1720I	GCTNAGC	1 cut(s)	1422
BspDI	ATCGAT	1 cut(s)	1361
BspEI	TCCGGA	1 cut(s)	1138
BspFNI	CGCG	3 cut(s)	219, 230, 401
BspHI	TCATGA	1 cut(s)	2749
BspMAI	CTGCAG	2 cut(s)	1197, 1621
BspMI	ACCTGC	1 cut(s)	2098
BspOI	GCTAGC	1 cut(s)	2306
BspPI	GGATC	6 cut(s)	149, 753, 938, 1465, 1472, 2871
BspT107I	GGYRCC	1 cut(s)	1223
BspTI	CTTAAG	1 cut(s)	1592
BspTNI	GGTCTC	1 cut(s)	704
BsrBI	CCGCTC	1 cut(s)	2147
BsrDI	GCAATG	4 cut(s)	492, 927, 1872, 2461
BsrFI	RCCGGY	4 cut(s)	346, 667, 704, 2855
BsrI	ACTGG	4 cut(s)	39, 193, 785, 2127
BssAI	RCCGGY	4 cut(s)	346, 667, 704, 2855
BssECI	CCNNGG	8 cut(s)	117, 210, 446, 513, 763, 1506, 1781, 2331
BssSI	CACGAG	2 cut(s)	954, 1083
BssT1I	CCWWGG	3 cut(s)	513, 763, 2331
Bst2BI	CACGAG	2 cut(s)	954, 1083
Bst2UI	CCWGG	5 cut(s)	119, 585, 1507, 1783, 2078
Bst4CI	ACNGT	5 cut(s)	725, 1155, 2663, 2669, 2708
Bst6I	CTCTTC	2 cut(s)	137, 2343
BstAFI	CTTAAG	1 cut(s)	1592
BstAPI	GCANNNNNTGC	6 cut(s)	677, 854, 1100, 1247, 2837, 2926
BstFNI	CGCG	3 cut(s)	219, 230, 401
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	4 cut(s)	114, 221, 403, 485
BstMAI	GTCTC	2 cut(s)	704, 1463
BstNI	CCWGG	5 cut(s)	119, 585, 1507, 1783, 2078
BstNSI	RCATGY	4 cut(s)	680, 1100, 1348, 1498
BstPAI	GACNNNNGTC	1 cut(s)	1706
BstSCI	CCNGG	6 cut(s)	57, 117, 583, 1505, 1781, 2076
BstSFI	CTRYAG	4 cut(s)	1193, 1617, 1725, 1899
BstSLI	GKGCMC	1 cut(s)	1010
BstUI	CGCG	3 cut(s)	219, 230, 401
BstV1I	GCAGC	9 cut(s)	260, 832, 980, 1087, 1865, 2417, 2495, 2690, 2923
BstV2I	GAAGAC	5 cut(s)	87, 318, 365, 1422, 2172
BstX2I	RGATCY	4 cut(s)	943, 1012, 1457, 2863
BstXI	CCANNNNNNTGG	1 cut(s)	1363
BstYI	RGATCY	4 cut(s)	943, 1012, 1457, 2863
Bsu15I	ATCGAT	1 cut(s)	1361
Bsu36I	CCTNAGG	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	1361
BtgZI	GCGATG	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	328
BtsI	GCAGTG	4 cut(s)	2115, 2399, 2838, 2984
BtsIMutI	CAGTG	7 cut(s)	730, 1129, 1326, 2115, 2399, 2838, 2984
BveI	ACCTGC	1 cut(s)	2098
CaiI	CAGNNNCTG	2 cut(s)	340, 2191
CciI	TCATGA	1 cut(s)	2749
CfoI	GCGC	4 cut(s)	114, 221, 403, 485
Cfr10I	RCCGGY	4 cut(s)	346, 667, 704, 2855
ClaI	ATCGAT	1 cut(s)	1361
CseI	GACGC	2 cut(s)	416, 1427
Csp6I	GTAC	1 cut(s)	1187
CviQI	GTAC	1 cut(s)	1187
DraI	TTTAAA	1 cut(s)	2272
EaeI	YGGCCR	2 cut(s)	3, 537
Eam1104I	CTCTTC	2 cut(s)	137, 2343
EarI	CTCTTC	2 cut(s)	137, 2343
EciI	GGCGGA	2 cut(s)	88, 137
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	3 cut(s)	513, 763, 2331
Eco24I	GRGCYC	2 cut(s)	129, 1010
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	5 cut(s)	50, 337, 2057, 2154, 2798
Eco47III	AGCGCT	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	4 cut(s)	330, 1562, 2367, 2900
Eco81I	CCTNAGG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	337, 2798
EcoRII	CCWGG	5 cut(s)	117, 583, 1505, 1781, 2076
EcoT14I	CCWWGG	3 cut(s)	513, 763, 2331
EcoT22I	ATGCAT	2 cut(s)	2032, 2372
EcoT38I	GRGCYC	2 cut(s)	129, 1010
ErhI	CCWWGG	3 cut(s)	513, 763, 2331
Esp3I	CGTCTC	1 cut(s)	1463
FaqI	GGGAC	3 cut(s)	36, 451, 2784
FauI	CCCGC	4 cut(s)	211, 224, 249, 264
FauNDI	CATATG	1 cut(s)	2617
FbaI	TGATCA	3 cut(s)	1789, 2112, 2230
FblI	GTMKAC	2 cut(s)	11, 995
FriOI	GRGCYC	2 cut(s)	129, 1010
FspBI	CTAG	4 cut(s)	1512, 1704, 2303, 2867
GlaI	GCGC	4 cut(s)	113, 220, 402, 484
GsaI	CCCAGC	2 cut(s)	438, 1049
GsuI	CTGGAG	2 cut(s)	1077, 2110
HaeII	RGCGCY	1 cut(s)	115
HapII	CCGG	7 cut(s)	59, 347, 668, 705, 1139, 1871, 2856
HgaI	GACGC	2 cut(s)	416, 1427
HhaI	GCGC	4 cut(s)	114, 221, 403, 485
Hin6I	GCGC	4 cut(s)	112, 219, 401, 483
HinP1I	GCGC	4 cut(s)	112, 219, 401, 483
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaII	CCGG	7 cut(s)	59, 347, 668, 705, 1139, 1871, 2856
HphI	GGTGA	6 cut(s)	245, 719, 1022, 1330, 2122, 2735
Hpy166II	GTNNAC	3 cut(s)	12, 996, 2711
Hpy8I	GTNNAC	3 cut(s)	12, 996, 2711
Hpy99I	CGWCG	2 cut(s)	43, 296
HpyAV	CCTTC	3 cut(s)	1763, 1843, 2349
HpyCH4III	ACNGT	5 cut(s)	725, 1155, 2663, 2669, 2708
HpyCH4IV	ACGT	5 cut(s)	327, 362, 2267, 2924, 2951
HpySE526I	ACGT	5 cut(s)	327, 362, 2267, 2924, 2951
HspAI	GCGC	4 cut(s)	112, 219, 401, 483
KflI	GGGWCCC	1 cut(s)	2798
Kpn2I	TCCGGA	1 cut(s)	1138
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Ksp22I	TGATCA	3 cut(s)	1789, 2112, 2230
Lsp1109I	GCAGC	9 cut(s)	260, 832, 980, 1087, 1865, 2417, 2495, 2690, 2923
LweI	GCATC	8 cut(s)	691, 1250, 1276, 2017, 2164, 2379, 2590, 2665
MaeI	CTAG	4 cut(s)	1512, 1704, 2303, 2867
MaeII	ACGT	5 cut(s)	327, 362, 2267, 2924, 2951
MaeIII	GTNAC	8 cut(s)	18, 489, 1490, 1497, 1603, 1925, 2663, 2723
MbiI	CCGCTC	1 cut(s)	2147
MfeI	CAATTG	3 cut(s)	800, 981, 1946
MflI	RGATCY	4 cut(s)	943, 1012, 1457, 2863
MhlI	GDGCHC	4 cut(s)	129, 583, 1010, 1044
MlsI	TGGCCA	1 cut(s)	539
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	6 cut(s)	7, 17, 155, 258, 1509, 1637
MmeI	TCCRAC	5 cut(s)	315, 1363, 1375, 1505, 2424
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	2 cut(s)	2032, 2372
MroI	TCCGGA	1 cut(s)	1138
MroNI	GCCGGC	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	539
MslI	CAYNNNNRTG	4 cut(s)	635, 954, 1035, 1436
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	3 cut(s)	1856, 2408, 2486
MspCI	CTTAAG	1 cut(s)	1592
MspI	CCGG	7 cut(s)	59, 347, 668, 705, 1139, 1871, 2856
MspR9I	CCNGG	6 cut(s)	59, 119, 585, 1507, 1783, 2078
MunI	CAATTG	3 cut(s)	800, 981, 1946
Mva1269I	GAATGC	2 cut(s)	1327, 2045
MvaI	CCWGG	5 cut(s)	119, 585, 1507, 1783, 2078
MvnI	CGCG	3 cut(s)	219, 230, 401
NaeI	GCCGGC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	2617
NgoMIV	GCCGGC	1 cut(s)	346
NheI	GCTAGC	1 cut(s)	2302
NmeAIII	GCCGAG	3 cut(s)	31, 235, 471
NmuCI	GTSAC	2 cut(s)	2663, 2723
NsiI	ATGCAT	2 cut(s)	2032, 2372
NspI	RCATGY	4 cut(s)	680, 1100, 1348, 1498
OliI	CACNNNNGTG	1 cut(s)	1035
PaeI	GCATGC	2 cut(s)	680, 1348
PagI	TCATGA	1 cut(s)	2749
PaqCI	CACCTGC	1 cut(s)	2098
PciI	ACATGT	1 cut(s)	1494
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 1348
PctI	GAATGC	2 cut(s)	1327, 2045
PdiI	GCCGGC	1 cut(s)	348
PfeI	GAWTC	8 cut(s)	43, 287, 317, 509, 521, 1253, 1695, 1773
PleI	GAGTC	6 cut(s)	7, 16, 155, 258, 1509, 1637
PpsI	GAGTC	6 cut(s)	7, 16, 155, 258, 1509, 1637
PpuMI	RGGWCCY	2 cut(s)	337, 2798
PscI	ACATGT	1 cut(s)	1494
PshAI	GACNNNNGTC	1 cut(s)	1706
PshBI	ATTAAT	2 cut(s)	975, 2898
PsiI	TTATAA	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	2267
Psp5II	RGGWCCY	2 cut(s)	337, 2798
Psp6I	CCWGG	5 cut(s)	117, 583, 1505, 1781, 2076
PspFI	CCCAGC	2 cut(s)	434, 1045
PspGI	CCWGG	5 cut(s)	117, 583, 1505, 1781, 2076
PspOMI	GGGCCC	1 cut(s)	1006
PspPPI	RGGWCCY	2 cut(s)	337, 2798
PstI	CTGCAG	2 cut(s)	1197, 1621
PstNI	CAGNNNCTG	2 cut(s)	340, 2191
PsuI	RGATCY	4 cut(s)	943, 1012, 1457, 2863
PvuII	CAGCTG	3 cut(s)	1856, 2408, 2486
RsaI	GTAC	1 cut(s)	1188
RsaNI	GTAC	1 cut(s)	1187
RseI	CAYNNNNRTG	4 cut(s)	635, 954, 1035, 1436
SacI	GAGCTC	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	10
SchI	GAGTC	6 cut(s)	7, 17, 155, 258, 1509, 1637
ScrFI	CCNGG	6 cut(s)	59, 119, 585, 1507, 1783, 2078
SduI	GDGCHC	4 cut(s)	129, 583, 1010, 1044
SfaNI	GCATC	8 cut(s)	691, 1250, 1276, 2017, 2164, 2379, 2590, 2665
SfcI	CTRYAG	4 cut(s)	1193, 1617, 1725, 1899
SinI	GGWCC	5 cut(s)	50, 337, 2057, 2154, 2798
SmiMI	CAYNNNNRTG	4 cut(s)	635, 954, 1035, 1436
SmlI	CTYRAG	3 cut(s)	173, 1592, 1917
SmoI	CTYRAG	3 cut(s)	173, 1592, 1917
SpeI	ACTAGT	1 cut(s)	1703
SphI	GCATGC	2 cut(s)	680, 1348
SspI	AATATT	2 cut(s)	1280, 2417
SspMI	CTAG	4 cut(s)	1512, 1704, 2303, 2867
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	57, 117, 583, 1505, 1781, 2076
StyI	CCWWGG	3 cut(s)	513, 763, 2331
TaaI	ACNGT	5 cut(s)	725, 1155, 2663, 2669, 2708
TaiI	ACGT	5 cut(s)	330, 365, 2270, 2927, 2954
TaqI	TCGA	4 cut(s)	11, 755, 1361, 2476
TaqII	GACCGA	2 cut(s)	38, 167
TatI	WGTACW	1 cut(s)	1186
TauI	GCSGC	4 cut(s)	209, 463, 607, 683
TfiI	GAWTC	8 cut(s)	43, 287, 317, 509, 521, 1253, 1695, 1773
TscAI	CASTG	7 cut(s)	730, 1129, 1333, 2122, 2399, 2838, 2991
TseFI	GTSAC	2 cut(s)	2663, 2723
TseI	GCWGC	9 cut(s)	248, 845, 968, 1100, 1853, 2405, 2483, 2678, 2911
Tsp45I	GTSAC	2 cut(s)	2663, 2723
TspGWI	ACGGA	3 cut(s)	1215, 1234, 1487
TspRI	CASTG	7 cut(s)	730, 1129, 1333, 2122, 2399, 2838, 2991
Vha464I	CTTAAG	1 cut(s)	1592
VpaK11BI	GGWCC	5 cut(s)	50, 337, 2057, 2154, 2798
VspI	ATTAAT	2 cut(s)	975, 2898
XapI	RAATTY	4 cut(s)	901, 1117, 1406, 1823
XceI	RCATGY	4 cut(s)	680, 1100, 1348, 1498
XmiI	GTMKAC	2 cut(s)	11, 995
XspI	CTAG	4 cut(s)	1512, 1704, 2303, 2867
Zsp2I	ATGCAT	2 cut(s)	2032, 2372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.