Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000344

Physical Location & Seq

Genomic Coordinates Forward (+)

76257847 .. 76259269

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGTCACAGATTGACAGCCATGCATTTCATGCCTAATCTTGAAGATGTTATACTGAAATTATGTTTCTGCATCCAACAGATATTTTCGCCATGCTTCAGAGATATTCTCCGTACCTATGCCCATGATGATGTCAGTGTCAGATCTTGGTTTATTGGGCTTGATGTTAAACATCTTAATGACATCAAGTTTTGCTGCTTCTCTTGGACAGCAGGAGTCATTTGTGCTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

6.87

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19820
fragaria_vesca	FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica	MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica	Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis	pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis	RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata	RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora	Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa	Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha	Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana	Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BbvI	GCAGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BseGI	GGATG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	143
BssMI	GATC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	4 cut(s)	22, 31, 93, 125
CviJI	RGCY	2 cut(s)	20, 160
CviKI_1	RGCY	2 cut(s)	20, 160
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	4 cut(s)	25, 34, 96, 128
FaiI	YATR	8 cut(s)	23, 32, 53, 64, 94, 120, 126, 235
FatI	CATG	4 cut(s)	21, 30, 92, 124
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
Hin1II	CATG	4 cut(s)	25, 34, 96, 128
HinfI	GANTC	2 cut(s)	4, 216
Hpy188I	TCNGA	2 cut(s)	101, 143
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	25, 72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	25, 34, 96, 128
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	198, 213
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	13, 225
MmeI	TCCRAC	1 cut(s)	100
Mph1103I	ATGCAT	1 cut(s)	27
MseI	TTAA	2 cut(s)	168, 177
MslI	CAYNNNNRTG	2 cut(s)	129, 177
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	25, 34, 96, 128
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	2 cut(s)	12, 224
PpsI	GAGTC	2 cut(s)	12, 224
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	2 cut(s)	129, 177
SaqAI	TTAA	2 cut(s)	168, 177
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	13, 225
SetI	ASST	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	129, 177
Sse9I	AATT	1 cut(s)	59
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	168, 177
Tru9I	TTAA	2 cut(s)	168, 177
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.