Rh6AG307600

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
50550833 .. 50551048
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG307600.1

Sequence Viewer

Length: 216 bp
ATGTCCGCCATTCTCCTCCGCAGGCAGCTCACCCGCGACGACTCCTATATCTGGCCCAGGCTCTCCCCGACGACGCAGTCCAGCCTCAATCGATTCTCCTGTCCTGTATTCAACGCGAGGAGGTCAAATCGATTTCCAAGAAGCTCTGCGATTCCATCTCCGAGCTCGCCTCCGAAATCTTGCCGGACAACGGCTGGCCGGAGCTCCTCCCGTTAA

Protein Analysis

71

Amino Acids

8.0

Weight (kDa)

12.0

Isoelectric Point (pI)

124.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
AccII CGCG 2 cut(s) 36, 116
AciI CCGC 3 cut(s) 6, 19, 34
AcoI YGGCCR 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 51, 190
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 4 cut(s) 28, 144, 165, 204
AluI AGCT 4 cut(s) 28, 144, 165, 204
Alw21I GWGCWC 2 cut(s) 167, 206
AoxI GGCC 2 cut(s) 53, 196
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 22
BanII GRGCYC 2 cut(s) 167, 206
Bbv12I GWGCWC 2 cut(s) 167, 206
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 58
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bsa29I ATCGAT 2 cut(s) 91, 130
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 190
BseBI CCWGG 1 cut(s) 58
BseCI ATCGAT 2 cut(s) 91, 130
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 51, 190
BseRI GAGGAG 3 cut(s) 5, 133, 196
BseXI GCAGC 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 36, 116
BshFI GGCC 2 cut(s) 55, 198
BshVI ATCGAT 2 cut(s) 91, 130
BsiHKAI GWGCWC 2 cut(s) 167, 206
BsiSI CCGG 2 cut(s) 184, 199
BslI CCNNNNNNNGG 2 cut(s) 51, 190
BsnI GGCC 2 cut(s) 55, 198
Bsp1286I GDGCHC 2 cut(s) 167, 206
BspACI CCGC 3 cut(s) 6, 19, 34
BspANI GGCC 2 cut(s) 55, 198
BspDI ATCGAT 2 cut(s) 91, 130
BspFNI CGCG 2 cut(s) 36, 116
BssECI CCNNGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 23, 167, 196
BstFNI CGCG 2 cut(s) 36, 116
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstUI CGCG 2 cut(s) 36, 116
BstV1I GCAGC 1 cut(s) 37
Bsu15I ATCGAT 2 cut(s) 91, 130
BsuRI GGCC 2 cut(s) 55, 198
BsuTUI ATCGAT 2 cut(s) 91, 130
Cac8I GCNNGC 3 cut(s) 23, 167, 196
Cfr13I GGNCC 1 cut(s) 54
ClaI ATCGAT 2 cut(s) 91, 130
CseI GACGC 1 cut(s) 82
CviJI RGCY 9 cut(s) 28, 55, 61, 84, 144, 165, 194, 198, 204
CviKI_1 RGCY 9 cut(s) 28, 55, 61, 84, 144, 165, 194, 198, 204
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 196
Ecl136II GAGCTC 2 cut(s) 165, 204
Eco24I GRGCYC 2 cut(s) 167, 206
Eco53kI GAGCTC 2 cut(s) 165, 204
EcoICRI GAGCTC 2 cut(s) 165, 204
EcoRII CCWGG 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 167, 206
FaiI YATR 1 cut(s) 48
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 2 cut(s) 167, 206
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 55, 198
HapII CCGG 2 cut(s) 184, 199
HgaI GACGC 1 cut(s) 82
HinfI GANTC 3 cut(s) 41, 93, 151
HpaII CCGG 2 cut(s) 184, 199
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 162, 174
Hpy99I CGWCG 3 cut(s) 41, 73, 76
LmnI GCTCC 2 cut(s) 201, 209
Lsp1109I GCAGC 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 167, 206
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 26, 95, 111, 114, 180
MseI TTAA 1 cut(s) 214
MspI CCGG 2 cut(s) 184, 199
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 2 cut(s) 36, 116
PfeI GAWTC 2 cut(s) 93, 151
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp124BI GAGCTC 2 cut(s) 167, 206
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspPI GGNCC 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 76
SacI GAGCTC 2 cut(s) 167, 206
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 167, 206
SetI ASST 5 cut(s) 30, 125, 146, 167, 206
SsiI CCGC 3 cut(s) 6, 19, 34
SstI GAGCTC 2 cut(s) 167, 206
StyD4I CCNGG 1 cut(s) 56
TaqI TCGA 2 cut(s) 91, 130
TfiI GAWTC 2 cut(s) 93, 151
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseI GCWGC 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.