Rorug05G0483800

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
66585933 .. 66588505
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0483800.1

Sequence Viewer

Length: 789 bp
ATGCCGCCTTGGCAGAGTGCGTGGCAGCGCGTCAGCGGTGATCCCGGGGGACTCTTGTGCTCAGGCCGTGGCCTGCCTGGCTGCCTATCCGTGGGTCACTCCTTTGACGGTAGTTGGTGCTTCTGGCGGTACGATGAGCCTTTTGAGCCCTACAAGGTCAGCAAAGTGGATCTTCTTGCCCAAAGTTGCTCTTTATGGCTCTTAATTTGGGGGTGCTCGACACTTGGTGTCTGGAAGCTTAACACATTGGGGTTCCTTCCTACACATGCATCCGATTGGGTTTCATCCTTACCCCCTGCTCAGGTTTGTGTGTGGAATTCTGATGGATGGGAAAAACAGAAAAGCAGATTCTTGCAGCTTCCAGCTGGGAGAACACCATCTTCAGTGTCAGATACTCGCGTTCAGTTTCATCAGGATCAGGCACATTTCTTGGTTGTGCATGAGACTCAGCTGGCCATATTTGAAACAACAAAACTAGAATGTGTAAAGCAGTGGCTCCCATGTGAGTCTGCTGCAGGTAGAACAAAGTTTTCTTTTTGTGTCTATTCGCAGCAGCAACTAGCCGAAATAAATTTCTGTGGCTATTTCACTTGCTCGCGTGGTGTGCGTCAAGGTGACCCGCTTTCTCCTTTGCTTTTTTGCTTGGCGGAAGAGGTATTAAGCAGGGGTCTTTCCATGTTATTGGATCAACATAAAATCATGCGTATTGGGGCGCAGCTGGGTGTAAGTCCTCCTACTCATGCTGTTTTTGCTGACGATGTGATGATTTTCATGCAAGGCAGGACATAA

Protein Analysis

262

Amino Acids

29.31

Weight (kDa)

6.64

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC4 PF06417 48 - 97 1e-05 ER membrane protein complex subunit 4
RVT_1 PF00078 141 - 261 4.4e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 506
AccII CGCG 3 cut(s) 30, 399, 598
AciI CCGC 5 cut(s) 5, 36, 127, 620, 647
AclWI GGATC 4 cut(s) 35, 177, 423, 693
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 2 cut(s) 316, 571
AcuI CTGAAG 1 cut(s) 366
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 91, 301
AgsI TTSAA 1 cut(s) 464
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 238, 358, 365, 451, 718
AluI AGCT 5 cut(s) 238, 358, 365, 451, 718
Alw21I GWGCWC 2 cut(s) 62, 218
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 4 cut(s) 35, 177, 423, 693
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 64, 70, 453
ApeKI GCWGC 7 cut(s) 25, 81, 355, 512, 550, 553, 715
ApoI RAATTY 2 cut(s) 316, 571
AspLEI GCGC 2 cut(s) 30, 715
AsuC2I CCSGG 2 cut(s) 45, 46
AsuHPI GGTGA 2 cut(s) 50, 626
AvaI CYCGRG 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 455
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 62, 218
BbvI GCAGC 7 cut(s) 37, 68, 367, 499, 562, 565, 727
BccI CCATC 3 cut(s) 317, 321, 385
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 45, 46
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 2 cut(s) 476, 560
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 506
BglI GCCNNNNNGGC 2 cut(s) 10, 78
BisI GCNGC 8 cut(s) 5, 26, 82, 356, 513, 551, 554, 716
BlsI GCNGC 8 cut(s) 6, 27, 83, 357, 514, 552, 555, 717
Bme1390I CCNGG 3 cut(s) 45, 46, 78
BmeT110I CYCGRG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 254, 497
BmrFI CCNGG 3 cut(s) 45, 46, 78
BmsI GCATC 1 cut(s) 278
Bpu10I CCTNAGC 2 cut(s) 61, 300
BpuMI CCSGG 2 cut(s) 45, 46
BsaJI CCNNGG 5 cut(s) 8, 44, 45, 67, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 301
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 5 cut(s) 8, 44, 45, 67, 90
BseGI GGATG 3 cut(s) 269, 284, 332
BseLI CCNNNNNNNGG 2 cut(s) 91, 301
BseMII CTCAG 3 cut(s) 75, 314, 461
BseXI GCAGC 7 cut(s) 37, 68, 367, 499, 562, 565, 727
BseYI CCCAGC 2 cut(s) 365, 718
Bsh1236I CGCG 3 cut(s) 30, 399, 598
BshFI GGCC 3 cut(s) 66, 72, 455
BsiHKAI GWGCWC 2 cut(s) 62, 218
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 91, 301
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 3 cut(s) 66, 72, 455
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 62, 150, 218
Bsp143I GATC 4 cut(s) 40, 169, 415, 685
BspACI CCGC 5 cut(s) 5, 36, 127, 620, 647
BspANI GGCC 3 cut(s) 66, 72, 455
BspCNI CTCAG 3 cut(s) 74, 313, 460
BspFNI CGCG 3 cut(s) 30, 399, 598
BspLI GGNNCC 2 cut(s) 254, 497
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 506
BspPI GGATC 4 cut(s) 35, 177, 423, 693
BssECI CCNNGG 5 cut(s) 8, 44, 45, 67, 90
BssMI GATC 4 cut(s) 40, 169, 415, 685
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 74, 453, 596
BstDEI CTNAG 3 cut(s) 61, 300, 447
BstDSI CCRYGG 2 cut(s) 67, 90
BstEII GGTNACC 1 cut(s) 614
BstF5I GGATG 3 cut(s) 269, 284, 332
BstFNI CGCG 3 cut(s) 30, 399, 598
BstHHI GCGC 2 cut(s) 30, 715
BstKTI GATC 4 cut(s) 43, 172, 418, 688
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 4 cut(s) 40, 169, 415, 685
BstMWI GCNNNNNNNGC 5 cut(s) 10, 78, 145, 604, 749
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 43, 44, 76
BstSFI CTRYAG 1 cut(s) 513
BstUI CGCG 3 cut(s) 30, 399, 598
BstV1I GCAGC 7 cut(s) 37, 68, 367, 499, 562, 565, 727
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 3 cut(s) 66, 72, 455
BtgI CCRYGG 2 cut(s) 67, 90
BtsCI GGATG 3 cut(s) 269, 284, 332
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 390, 497
BveI ACCTGC 1 cut(s) 506
Cac8I GCNNGC 3 cut(s) 74, 453, 596
CfoI GCGC 2 cut(s) 30, 715
Cfr9I CCCGGG 1 cut(s) 44
CseI GACGC 2 cut(s) 19, 596
Csp6I GTAC 1 cut(s) 130
CviAII CATG 7 cut(s) 266, 440, 501, 676, 700, 740, 772
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 3 cut(s) 61, 300, 447
DpnI GATC 4 cut(s) 42, 171, 417, 687
DpnII GATC 4 cut(s) 40, 169, 415, 685
DraIII CACNNNGTG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 614
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 7 cut(s) 269, 443, 504, 679, 703, 743, 775
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 175, 207
FaqI GGGAC 1 cut(s) 63
FatI CATG 7 cut(s) 265, 439, 500, 675, 699, 739, 771
FauI CCCGC 1 cut(s) 627
Fnu4HI GCNGC 8 cut(s) 5, 26, 82, 356, 513, 551, 554, 716
FokI GGATG 3 cut(s) 256, 271, 339
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 8 cut(s) 5, 26, 82, 356, 513, 551, 554, 716
FspBI CTAG 2 cut(s) 476, 560
GlaI GCGC 2 cut(s) 29, 714
GluI GCNGC 8 cut(s) 5, 26, 82, 356, 513, 551, 554, 716
GsaI CCCAGC 2 cut(s) 369, 722
HaeIII GGCC 3 cut(s) 66, 72, 455
HapII CCGG 1 cut(s) 45
HgaI GACGC 2 cut(s) 19, 596
HhaI GCGC 2 cut(s) 30, 715
Hin1II CATG 7 cut(s) 269, 443, 504, 679, 703, 743, 775
Hin6I GCGC 2 cut(s) 28, 713
HinP1I GCGC 2 cut(s) 28, 713
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 4 cut(s) 51, 348, 445, 506
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 50, 626
Hpy188I TCNGA 3 cut(s) 274, 322, 391
Hpy188III TCNNGA 2 cut(s) 232, 413
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 269, 355, 439, 515, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 78, 145, 604, 749
HpyF3I CTNAG 3 cut(s) 61, 300, 447
Hsp92II CATG 7 cut(s) 269, 443, 504, 679, 703, 743, 775
HspAI GCGC 2 cut(s) 28, 713
Kzo9I GATC 4 cut(s) 40, 169, 415, 685
LmnI GCTCC 1 cut(s) 501
Lsp1109I GCAGC 7 cut(s) 37, 68, 367, 499, 562, 565, 727
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 476, 560
MaeIII GTNAC 2 cut(s) 95, 614
MalI GATC 4 cut(s) 42, 171, 417, 687
MboI GATC 4 cut(s) 40, 169, 415, 685
MboII GAAGA 3 cut(s) 164, 372, 662
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 3 cut(s) 62, 150, 218
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 3 cut(s) 204, 316, 571
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 3 cut(s) 45, 439, 515
MnlI CCTC 2 cut(s) 646, 741
Mox20I TGGCCA 1 cut(s) 455
Mph1103I ATGCAT 1 cut(s) 271
MscI TGGCCA 1 cut(s) 455
MseI TTAA 3 cut(s) 203, 240, 659
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 4 cut(s) 36, 365, 451, 718
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 3 cut(s) 45, 46, 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 3 cut(s) 30, 399, 598
MwoI GCNNNNNNNGC 5 cut(s) 10, 78, 145, 604, 749
NciI CCSGG 2 cut(s) 45, 46
NdeII GATC 4 cut(s) 40, 169, 415, 685
NlaIII CATG 7 cut(s) 269, 443, 504, 679, 703, 743, 775
NlaIV GGNNCC 2 cut(s) 254, 497
NmuCI GTSAC 2 cut(s) 95, 614
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 1 cut(s) 348
PkrI GCNGC 8 cut(s) 6, 27, 83, 357, 514, 552, 555, 717
PleI GAGTC 3 cut(s) 45, 439, 514
PpsI GAGTC 3 cut(s) 45, 439, 514
Psp6I CCWGG 1 cut(s) 76
PspEI GGTNACC 1 cut(s) 614
PspFI CCCAGC 2 cut(s) 365, 718
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 254, 497
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 3 cut(s) 365, 451, 718
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 3 cut(s) 203, 240, 659
SatI GCNGC 8 cut(s) 5, 26, 82, 356, 513, 551, 554, 716
Sau3AI GATC 4 cut(s) 40, 169, 415, 685
SchI GAGTC 3 cut(s) 45, 439, 515
ScrFI CCNGG 3 cut(s) 45, 46, 78
SduI GDGCHC 3 cut(s) 62, 150, 218
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 513
SmaI CCCGGG 1 cut(s) 46
Sse9I AATT 3 cut(s) 204, 316, 571
SsiI CCGC 5 cut(s) 5, 36, 127, 620, 647
SspMI CTAG 2 cut(s) 476, 560
StyD4I CCNGG 3 cut(s) 43, 44, 76
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 218
TasI AATT 3 cut(s) 204, 316, 571
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 348
Tru1I TTAA 3 cut(s) 203, 240, 659
Tru9I TTAA 3 cut(s) 203, 240, 659
TscAI CASTG 2 cut(s) 390, 497
TseFI GTSAC 2 cut(s) 95, 614
TseI GCWGC 7 cut(s) 25, 81, 355, 512, 550, 553, 715
Tsp45I GTSAC 2 cut(s) 95, 614
TspDTI ATGAA 3 cut(s) 273, 398, 760
TspGWI ACGGA 1 cut(s) 79
TspMI CCCGGG 1 cut(s) 44
TspRI CASTG 2 cut(s) 390, 497
XapI RAATTY 2 cut(s) 316, 571
XceI RCATGY 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 44
XspI CTAG 2 cut(s) 476, 560
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.