Rh3BG368200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006924
Physical Location & Seq
Reverse (-)
45920831 .. 45924108
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG368200.1

Sequence Viewer

Length: 1026 bp
ATGAAAAGGAGCTTTAAGATATATGTTTATCCTCACAGGAAAGATGATCCCTTTGCAAATGCACTTTTGCCTGTGGATTTCGAACCTGCGGGTAATTATGCCAGTGAAAGTTACTTCAAGAAGGTCCTGATGAAGAGTCATTTCATCACAAAAGATCCAACCAAGGCACATCTTTTCTTTTTACCTTTCTCTATTGCAAGGTTGCGGCACGACACCAGAGTTGGTGTGGCAGGTATCCAAGAGTTTATAAGAGATTACATCTTCAATATTAGTCACAAGTACGAATATTGGAACCGGACTGGTGGAGCAGATCATTTTTATGTTGCTTGTCATTCCATTGGACGCTCAGCTATGGAAAAAGCAACCCAAGTCAAATTTAATGCCATTCAAGTTGTGTGCTCTTCTAGTTACTTCCTATCTGGGTACATTACTCACAAGGATGCATGTCTGCCTCAAATATGGCCCAGAAAAGAAGAGCCCCCTAATCTTCTATCATCAAATAGAACAAAACTTGCATTCTTTGCCGGAGGAATTAACTCCCCAGTACGGGAAAGGCTTCTTCAAGTTTGGAGAAATGACCCTGAGATTTTTGTGCACTTCGGTCGGCTTAAAACATCTTATGCTGATGCGATGCTTGGTAGCATGTTCTGTCTCCACGTTAAAGGATTTGAAGTAAATACAGCTCGTATTGCAGATTCATTGTATTATGGCTGTGTCCCAGTGATAATTGCCAACTACTATGATTTACCATTTGCAGACATACTAAACTGGAAGAGCTTCTCAGTCGTTGTTGCCACTCTAGATATCCCTTTGCTTAAGAAGATCCTTAAAGGAATCAGCTCCAACGAATACATGAGGTTGAAAAGCAATGTGTTGAAGGTGCGCAAACAGTTCCAATGGCATCTTTTACCAACTGATTATGATGCTTTTAACATGGTTATGTACGAGTTGTGGCTCCGTCGGAGTTTTTCAACAGTTTCCTTGAGCACTTTTGAACATTCCAAATCAACAAATGATTTTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00534 ko01100 map00534 map01100
Pfam Domains
Protein Families
Exostosin

Protein Analysis

341

Amino Acids

39.48

Weight (kDa)

9.4

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 2 - 277 8e-68 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 884
Acc36I ACCTGC 2 cut(s) 94, 221
AciI CCGC 2 cut(s) 89, 205
AclWI GGATC 3 cut(s) 41, 149, 817
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 4 cut(s) 281, 425, 546, 944
AfiI CCNNNNNNNGG 2 cut(s) 546, 547
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 9 cut(s) 118, 265, 389, 563, 671, 862, 877, 972, 995
AluBI AGCT 5 cut(s) 12, 350, 683, 777, 840
AluI AGCT 5 cut(s) 12, 350, 683, 777, 840
Alw21I GWGCWC 3 cut(s) 401, 597, 989
Alw26I GTCTC 1 cut(s) 656
Alw44I GTGCAC 1 cut(s) 593
AlwI GGATC 3 cut(s) 41, 149, 817
AoxI GGCC 1 cut(s) 461
ApaLI GTGCAC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 2 cut(s) 555, 776
AspLEI GCGC 1 cut(s) 885
AspS9I GGNCC 2 cut(s) 124, 462
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 597
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 3 cut(s) 401, 597, 989
BcgI CGANNNNNNTGC 2 cut(s) 584, 618
BciVI GTATCC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 2 cut(s) 405, 800
BfrI CTTAAG 1 cut(s) 815
BfuAI ACCTGC 2 cut(s) 94, 221
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 206
BlpI GCTNAGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 124, 462
BmiI GGNNCC 2 cut(s) 293, 956
BmrI ACTGGG 2 cut(s) 536, 713
BmsI GCATC 5 cut(s) 430, 616, 621, 910, 913
BmuI ACTGGG 2 cut(s) 536, 713
Bpu1102I GCTNAGC 1 cut(s) 346
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 1003
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 547
Bse1I ACTGG 5 cut(s) 102, 304, 542, 719, 773
Bse3DI GCAATG 1 cut(s) 874
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 546, 547
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 3 cut(s) 360, 573, 795
BseNI ACTGG 5 cut(s) 102, 304, 542, 719, 773
BseSI GKGCMC 1 cut(s) 597
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 3 cut(s) 401, 597, 989
BsiSI CCGG 2 cut(s) 295, 525
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 2 cut(s) 546, 547
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 4 cut(s) 401, 480, 597, 989
Bsp143I GATC 4 cut(s) 46, 154, 310, 822
Bsp1720I GCTNAGC 1 cut(s) 346
BspACI CCGC 2 cut(s) 89, 205
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 3 cut(s) 359, 574, 794
BspLI GGNNCC 2 cut(s) 293, 956
BspMI ACCTGC 2 cut(s) 94, 221
BspPI GGATC 3 cut(s) 41, 149, 817
BspQI GCTCTTC 3 cut(s) 406, 468, 767
BspT104I TTCGAA 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 874
BsrI ACTGG 5 cut(s) 102, 304, 542, 719, 773
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 46, 154, 310, 822
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 891, 976
Bst6I CTCTTC 4 cut(s) 128, 406, 468, 767
BstAFI CTTAAG 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 346, 582, 781
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 885
BstKTI GATC 4 cut(s) 49, 157, 313, 825
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 4 cut(s) 46, 154, 310, 822
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 521, 689
BstNSI RCATGY 2 cut(s) 447, 646
BstSLI GKGCMC 1 cut(s) 597
BstX2I RGATCY 2 cut(s) 154, 822
BstYI RGATCY 2 cut(s) 154, 822
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 644
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 109, 726
BveI ACCTGC 2 cut(s) 94, 221
CfoI GCGC 1 cut(s) 885
Cfr13I GGNCC 2 cut(s) 124, 462
CseI GACGC 1 cut(s) 351
Csp6I GTAC 4 cut(s) 280, 424, 545, 943
CviAII CATG 5 cut(s) 444, 643, 853, 934, 1023
CviQI GTAC 4 cut(s) 280, 424, 545, 943
DdeI CTNAG 3 cut(s) 346, 582, 781
DpnI GATC 4 cut(s) 48, 156, 312, 824
DpnII GATC 4 cut(s) 46, 154, 310, 822
Eam1104I CTCTTC 4 cut(s) 128, 406, 468, 767
EarI CTCTTC 4 cut(s) 128, 406, 468, 767
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 480
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 124
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 5 cut(s) 447, 646, 856, 937, 1026
FaqI GGGAC 1 cut(s) 701
FatI CATG 5 cut(s) 443, 642, 852, 933, 1022
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 405, 800
FspI TGCGCA 1 cut(s) 884
GlaI GCGC 1 cut(s) 884
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 463
HapII CCGG 2 cut(s) 295, 525
HgaI GACGC 1 cut(s) 351
HhaI GCGC 1 cut(s) 885
Hin1II CATG 5 cut(s) 447, 646, 856, 937, 1026
Hin6I GCGC 1 cut(s) 883
HinP1I GCGC 1 cut(s) 883
HinfI GANTC 3 cut(s) 136, 695, 834
HpaII CCGG 2 cut(s) 295, 525
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 1 cut(s) 963
Hpy188III TCNNGA 3 cut(s) 118, 127, 800
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 1 cut(s) 963
HpyAV CCTTC 2 cut(s) 115, 871
HpyCH4III ACNGT 2 cut(s) 891, 976
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 8 cut(s) 56, 62, 197, 443, 515, 595, 692, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 689
HpyF3I CTNAG 3 cut(s) 346, 582, 781
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 5 cut(s) 447, 646, 856, 937, 1026
HspAI GCGC 1 cut(s) 883
Kzo9I GATC 4 cut(s) 46, 154, 310, 822
LguI GCTCTTC 3 cut(s) 406, 468, 767
LmnI GCTCC 4 cut(s) 9, 305, 845, 960
LweI GCATC 5 cut(s) 430, 616, 621, 910, 913
MaeI CTAG 2 cut(s) 405, 800
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 3 cut(s) 110, 272, 407
MalI GATC 4 cut(s) 48, 156, 312, 824
MboI GATC 4 cut(s) 46, 154, 310, 822
MboII GAAGA 8 cut(s) 145, 253, 393, 479, 485, 551, 784, 832
MflI RGATCY 2 cut(s) 154, 822
MhlI GDGCHC 4 cut(s) 401, 480, 597, 989
MluCI AATT 4 cut(s) 94, 374, 531, 726
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 3 cut(s) 182, 867, 941
MnlI CCTC 4 cut(s) 42, 462, 521, 849
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 2 cut(s) 555, 776
MseI TTAA 8 cut(s) 15, 378, 534, 609, 660, 816, 828, 930
MslI CAYNNNNRTG 3 cut(s) 318, 438, 938
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 295, 525
Mva1269I GAATGC 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 521, 689
NdeII GATC 4 cut(s) 46, 154, 310, 822
NlaIII CATG 5 cut(s) 447, 646, 856, 937, 1026
NlaIV GGNNCC 2 cut(s) 293, 956
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 884
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 447, 646
NspV TTCGAA 1 cut(s) 81
PciSI GCTCTTC 3 cut(s) 406, 468, 767
PctI GAATGC 1 cut(s) 515
PdmI GAANNNNTTC 2 cut(s) 555, 776
PfeI GAWTC 2 cut(s) 695, 834
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 124
PsiI TTATAA 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 293, 956
PspPI GGNCC 2 cut(s) 124, 462
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 2 cut(s) 154, 822
RsaI GTAC 4 cut(s) 281, 425, 546, 944
RsaNI GTAC 4 cut(s) 280, 424, 545, 943
RseI CAYNNNNRTG 3 cut(s) 318, 438, 938
SapI GCTCTTC 3 cut(s) 406, 468, 767
SaqAI TTAA 8 cut(s) 15, 378, 534, 609, 660, 816, 828, 930
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 4 cut(s) 46, 154, 310, 822
Sau96I GGNCC 2 cut(s) 124, 462
SchI GAGTC 1 cut(s) 145
SduI GDGCHC 4 cut(s) 401, 480, 597, 989
SfaNI GCATC 5 cut(s) 430, 616, 621, 910, 913
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 3 cut(s) 318, 438, 938
SmlI CTYRAG 2 cut(s) 815, 982
SmoI CTYRAG 2 cut(s) 815, 982
Sse9I AATT 4 cut(s) 94, 374, 531, 726
SsiI CCGC 2 cut(s) 89, 205
SspI AATATT 2 cut(s) 268, 287
SspMI CTAG 2 cut(s) 405, 800
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 891, 976
TaiI ACGT 1 cut(s) 660
TaqI TCGA 1 cut(s) 81
TaqII GACCGA 1 cut(s) 590
TasI AATT 4 cut(s) 94, 374, 531, 726
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 2 cut(s) 695, 834
Tru1I TTAA 8 cut(s) 15, 378, 534, 609, 660, 816, 828, 930
Tru9I TTAA 8 cut(s) 15, 378, 534, 609, 660, 816, 828, 930
TscAI CASTG 2 cut(s) 109, 726
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 17, 133, 146, 687
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 2 cut(s) 109, 726
Vha464I CTTAAG 1 cut(s) 815
VneI GTGCAC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 2 cut(s) 447, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmnI GAANNNNTTC 2 cut(s) 555, 776
XspI CTAG 2 cut(s) 405, 800
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.