Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006924

Physical Location & Seq

Genomic Coordinates Forward (+)

805130 .. 808696

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G006300.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCGTATTCTTCACTGGTGTTGTACTATTTGTCTCAGCGGCGTGTTCCAGGCCGCTCATTTAGACATTTTTTCTTCATACCCACAAGCTTAGCTCTCGTAACCTCTCTCCTCATTCTCTTTTACATTTCCACAACCTCCAATCTCTTCACTCATCATCACCCCAACCCAAAAACACCACTTCAAATCAATTCTTCTTCTTCTTCATCTACCTTTTCTTTCACAATTCTACGTCACAAAACTTCCTCCACACCCTTTGCAATTGAAGCTCCTTTGACAGAGGATGGTGGTGGTCAGAGAATTGAGAGTCAACGCTCACTAGGACCTCAACTGGGTTCAGATGGAAGTCATGTCAATAACAACGAGGTGTTCCATGATAGACATATCTTTCTGGAAGACTATAAAGAAATGAAAAGGAGCTTTAAGATATATGTCTATCCTCACAGGCAAGATGATTCCTTTGCAAATGCACTTTTGCCTGTGGATTCTGAACCTGGGGGTAATTATGCAAGTGAAAGTTTCTTCAAGAAGGTCCTTATGAAAAGTCGTTTCATCACAAATGATCCAACCAAGGCAGATCTTTTCTTTCTGCCTTTCTCAATTGCAAGGTTGCGACATGACCCTAGAGTTGGTGTGGGAGGTATCCAAGATTTTATAAGAGATTACATATTCAATGTTAGTCAGAAGTACCAATATTGGAACCGTACAGGTGGAGCAGATCACTTTTATGTTGCTTGTCATTCTATTGGGCGGTCAGCTATGGAAAAAGCAAGCGAAGTGAAATTTAATGCCATTCAAGTTGTGTGCTCTTCAAGCTACTTCCTTCCTGGTTACATACCACACAAGGATGCATGTCTGCCACAAATATGGCCGAGAAAAGAAGAGCCACATGACCTTCTTTCATCAAATAGAACAAAACTTGCGTTCTTTGCTGGAGGAATTAACTCCCCAGTACGGGAAAAGCTTCTTCAAGTGTGGAGAAATGACTCTGAGATTTTTGCACACTTTGGTCGGCTTACCACACCTTATGCGGATGAGCTGCTTGGTAGCAAGTTCTGCCTCCATGTTAAAGGCTTTGAAGTGAATACAGCTCGTGTTGCAGATTCATTATATTATGGTTGTGTCCCGGTGATAATTGCCAACTACTATGATTTACCATTCGCAGACATACTAAACTGGAAGAGCTTCTCAGTGATTGTTGCCACTCTAGATATCCCATTGCTTAAGAAAATCCTTAAAGGGATCAGCTCTGAGGAATATACGCGGTTACAAAGCAATGTGTTGAAGGTGCGCAAACATTTCCAATGGCATCTTTCTCCTATTGATTATGATGCTTTTTACATGGTTATGTACGAGTTGTGGCTACGACGAAGTTTTTCGACAGTTACCTCAAGTAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Exostosin

Protein Analysis

468

Amino Acids

53.53

Weight (kDa)

9.1

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006924)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g27020
malus_domestica	MD12G1006200.v1.1
prunus_persica	Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1 Prupe.7G006300_v2.0.a1
pyrus_communis	pycom12g00450
rosa_chinensis	RchiOBHm_Chr3g0496811
rosa_laevigata	RLG00000022501
rosa_multiflora	Rmu_sc0004684.1_g000007 Rmu_sc0011141.1_g000003
rosa_roxburghii	Rroxscaffold_6G00388690
rosa_rugosa	Rorug03G0288200
rosa_samantha	Rh3AG331700 Rh3BG368200 Rh3CG364500 Rh3DG367700
rosa_wichuraiana	Rw3G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc16I	TGCGCA	1 cut(s)	1292
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	1264
AciI	CCGC	5 cut(s)	40, 55, 751, 1031, 1264
AclWI	GGATC	2 cut(s)	557, 1250
AcoI	YGGCCR	1 cut(s)	869
AcsI	RAATTY	1 cut(s)	782
AfaI	GTAC	5 cut(s)	26, 689, 706, 954, 1352
AfiI	CCNNNNNNNGG	4 cut(s)	332, 629, 954, 955
AflII	CTTAAG	1 cut(s)	1223
AgsI	TTSAA	9 cut(s)	185, 266, 526, 673, 797, 813, 971, 1079, 1285
AjnI	CCWGG	3 cut(s)	49, 493, 826
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	557, 1250
AoxI	GGCC	2 cut(s)	52, 869
ApeKI	GCWGC	1 cut(s)	1039
ApoI	RAATTY	1 cut(s)	782
Asp700I	GAANNNNTTC	3 cut(s)	963, 1184, 1375
AspLEI	GCGC	1 cut(s)	1293
AspS9I	GGNCC	2 cut(s)	323, 532
AsuC2I	CCSGG	1 cut(s)	1127
AsuHPI	GGTGA	2 cut(s)	152, 1141
AvaII	GGWCC	2 cut(s)	323, 532
BauI	CACGAG	1 cut(s)	1092
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	1026
BccI	CCATC	2 cut(s)	278, 335
BciT130I	CCWGG	3 cut(s)	51, 495, 828
BciVI	GTATCC	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	1127
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	3 cut(s)	320, 624, 1208
BfrI	CTTAAG	1 cut(s)	1223
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	3 cut(s)	41, 55, 1040
BlpI	GCTNAGC	1 cut(s)	91
BlsI	GCNGC	3 cut(s)	42, 56, 1041
Bme1390I	CCNGG	4 cut(s)	51, 495, 828, 1127
Bme18I	GGWCC	2 cut(s)	323, 532
BmgT120I	GGNCC	2 cut(s)	323, 532
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	4 cut(s)	51, 495, 828, 1127
BmrI	ACTGGG	2 cut(s)	341, 944
BmsI	GCATC	3 cut(s)	838, 1318, 1321
BmuI	ACTGGG	2 cut(s)	341, 944
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	954
Bpu1102I	GCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	1375
BpuMI	CCSGG	1 cut(s)	1127
BsaJI	CCNNGG	2 cut(s)	494, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 629, 954, 955
Bse1I	ACTGG	4 cut(s)	21, 336, 950, 1181
Bse3DI	GCAATG	2 cut(s)	1217, 1282
BseBI	CCWGG	3 cut(s)	51, 495, 828
BseDI	CCNNGG	2 cut(s)	494, 570
BseGI	GGATG	3 cut(s)	289, 853, 1039
BseLI	CCNNNNNNNGG	4 cut(s)	332, 629, 954, 955
BseMI	GCAATG	2 cut(s)	1217, 1282
BseMII	CTCAG	4 cut(s)	50, 981, 1203, 1242
BseNI	ACTGG	4 cut(s)	21, 336, 950, 1181
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	1026
Bsh1236I	CGCG	1 cut(s)	1264
BshFI	GGCC	2 cut(s)	54, 871
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	1127
BslFI	GGGAC	1 cut(s)	1109
BslI	CCNNNNNNNGG	4 cut(s)	332, 629, 954, 955
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	1109
BsnI	GGCC	2 cut(s)	54, 871
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	4 cut(s)	562, 577, 718, 1242
Bsp1720I	GCTNAGC	1 cut(s)	91
BspACI	CCGC	5 cut(s)	40, 55, 751, 1031, 1264
BspANI	GGCC	2 cut(s)	54, 871
BspCNI	CTCAG	4 cut(s)	49, 982, 1202, 1243
BspFNI	CGCG	1 cut(s)	1264
BspLI	GGNNCC	1 cut(s)	701
BspPI	GGATC	2 cut(s)	557, 1250
BspQI	GCTCTTC	3 cut(s)	814, 876, 1175
BspTI	CTTAAG	1 cut(s)	1223
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	1217, 1282
BsrI	ACTGG	4 cut(s)	21, 336, 950, 1181
BssECI	CCNNGG	2 cut(s)	494, 570
BssMI	GATC	4 cut(s)	562, 577, 718, 1242
BssSI	CACGAG	1 cut(s)	1092
BssT1I	CCWWGG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	1092
Bst2UI	CCWGG	3 cut(s)	51, 495, 828
Bst4CI	ACNGT	2 cut(s)	704, 1384
Bst6I	CTCTTC	4 cut(s)	152, 814, 876, 1175
BstAFI	CTTAAG	1 cut(s)	1223
BstAPI	GCANNNNNTGC	1 cut(s)	1056
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	5 cut(s)	36, 91, 990, 1189, 1251
BstF5I	GGATG	3 cut(s)	289, 853, 1039
BstFNI	CGCG	1 cut(s)	1264
BstHHI	GCGC	1 cut(s)	1293
BstKTI	GATC	4 cut(s)	565, 580, 721, 1245
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	4 cut(s)	562, 577, 718, 1242
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 813, 929, 1056, 1097
BstNI	CCWGG	3 cut(s)	51, 495, 828
BstNSI	RCATGY	1 cut(s)	855
BstSCI	CCNGG	4 cut(s)	49, 493, 826, 1125
BstUI	CGCG	1 cut(s)	1264
BstV1I	GCAGC	1 cut(s)	1026
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	577
BstXI	CCANNNNNNTGG	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	54, 871
BtsCI	GGATG	3 cut(s)	289, 853, 1039
BtsIMutI	CAGTG	2 cut(s)	14, 1197
Cac8I	GCNNGC	1 cut(s)	772
CfoI	GCGC	1 cut(s)	1293
Cfr13I	GGNCC	2 cut(s)	323, 532
Csp6I	GTAC	5 cut(s)	25, 688, 705, 953, 1351
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	7 cut(s)	350, 374, 617, 852, 890, 1064, 1342
CviQI	GTAC	5 cut(s)	25, 688, 705, 953, 1351
DdeI	CTNAG	5 cut(s)	36, 91, 990, 1189, 1251
DpnI	GATC	4 cut(s)	564, 579, 720, 1244
DpnII	GATC	4 cut(s)	562, 577, 718, 1242
EaeI	YGGCCR	1 cut(s)	869
Eam1104I	CTCTTC	4 cut(s)	152, 814, 876, 1175
EarI	CTCTTC	4 cut(s)	152, 814, 876, 1175
Eco130I	CCWWGG	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	1213
Eco47I	GGWCC	2 cut(s)	323, 532
EcoO109I	RGGNCCY	2 cut(s)	323, 532
EcoRII	CCWGG	3 cut(s)	49, 493, 826
EcoRV	GATATC	1 cut(s)	1213
EcoT14I	CCWWGG	1 cut(s)	570
EcoT22I	ATGCAT	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	7 cut(s)	353, 377, 620, 855, 893, 1067, 1345
FaqI	GGGAC	1 cut(s)	1109
FatI	CATG	7 cut(s)	349, 373, 616, 851, 889, 1063, 1341
Fnu4HI	GCNGC	3 cut(s)	41, 55, 1040
FokI	GGATG	3 cut(s)	296, 860, 1046
Fsp4HI	GCNGC	3 cut(s)	41, 55, 1040
FspBI	CTAG	3 cut(s)	320, 624, 1208
FspI	TGCGCA	1 cut(s)	1292
GlaI	GCGC	1 cut(s)	1292
GluI	GCNGC	3 cut(s)	41, 55, 1040
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	54, 871
HapII	CCGG	1 cut(s)	1127
HhaI	GCGC	1 cut(s)	1293
Hin1II	CATG	7 cut(s)	353, 377, 620, 855, 893, 1067, 1345
Hin6I	GCGC	1 cut(s)	1291
HinP1I	GCGC	1 cut(s)	1291
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	2 cut(s)	88, 962
HinfI	GANTC	5 cut(s)	307, 455, 485, 986, 1103
HpaII	CCGG	1 cut(s)	1127
HphI	GGTGA	2 cut(s)	152, 1141
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	6 cut(s)	297, 340, 490, 684, 991, 1252
Hpy188III	TCNNGA	3 cut(s)	392, 526, 1208
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	1371
HpyAV	CCTTC	4 cut(s)	523, 833, 905, 1279
HpyCH4III	ACNGT	2 cut(s)	704, 1384
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	8 cut(s)	260, 464, 470, 509, 605, 851, 1001, 1100
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 813, 929, 1056, 1097
HpyF3I	CTNAG	5 cut(s)	36, 91, 990, 1189, 1251
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	7 cut(s)	353, 377, 620, 855, 893, 1067, 1345
HspAI	GCGC	1 cut(s)	1291
Kzo9I	GATC	4 cut(s)	562, 577, 718, 1242
LguI	GCTCTTC	3 cut(s)	814, 876, 1175
LmnI	GCTCC	3 cut(s)	274, 417, 713
Lsp1109I	GCAGC	1 cut(s)	1026
LweI	GCATC	3 cut(s)	838, 1318, 1321
MaeI	CTAG	3 cut(s)	320, 624, 1208
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	5 cut(s)	100, 233, 830, 1266, 1384
MalI	GATC	4 cut(s)	564, 579, 720, 1244
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	4 cut(s)	562, 577, 718, 1242
MfeI	CAATTG	2 cut(s)	261, 600
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	809
MlyI	GAGTC	2 cut(s)	316, 980
MmeI	TCCRAC	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	3 cut(s)	963, 1184, 1375
MseI	TTAA	6 cut(s)	423, 786, 942, 1068, 1224, 1236
MslI	CAYNNNNRTG	4 cut(s)	726, 846, 865, 1346
MspA1I	CMGCKG	1 cut(s)	40
MspCI	CTTAAG	1 cut(s)	1223
MspI	CCGG	1 cut(s)	1127
MspR9I	CCNGG	4 cut(s)	51, 495, 828, 1127
MunI	CAATTG	2 cut(s)	261, 600
MvaI	CCWGG	3 cut(s)	51, 495, 828
MvnI	CGCG	1 cut(s)	1264
MwoI	GCNNNNNNNGC	5 cut(s)	266, 813, 929, 1056, 1097
NciI	CCSGG	1 cut(s)	1127
NdeII	GATC	4 cut(s)	562, 577, 718, 1242
NlaIII	CATG	7 cut(s)	353, 377, 620, 855, 893, 1067, 1345
NlaIV	GGNNCC	1 cut(s)	701
NmeAIII	GCCGAG	1 cut(s)	897
NmuCI	GTSAC	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	1292
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	855
PciSI	GCTCTTC	3 cut(s)	814, 876, 1175
PdmI	GAANNNNTTC	3 cut(s)	963, 1184, 1375
PfeI	GAWTC	3 cut(s)	455, 485, 1103
PkrI	GCNGC	3 cut(s)	42, 56, 1041
PleI	GAGTC	2 cut(s)	315, 980
PpsI	GAGTC	2 cut(s)	315, 980
PpuMI	RGGWCCY	2 cut(s)	323, 532
PsiI	TTATAA	1 cut(s)	656
Psp5II	RGGWCCY	2 cut(s)	323, 532
Psp6I	CCWGG	3 cut(s)	49, 493, 826
PspGI	CCWGG	3 cut(s)	49, 493, 826
PspN4I	GGNNCC	1 cut(s)	701
PspPI	GGNCC	2 cut(s)	323, 532
PspPPI	RGGWCCY	2 cut(s)	323, 532
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	5 cut(s)	26, 689, 706, 954, 1352
RsaNI	GTAC	5 cut(s)	25, 688, 705, 953, 1351
RseI	CAYNNNNRTG	4 cut(s)	726, 846, 865, 1346
SapI	GCTCTTC	3 cut(s)	814, 876, 1175
SaqAI	TTAA	6 cut(s)	423, 786, 942, 1068, 1224, 1236
SatI	GCNGC	3 cut(s)	41, 55, 1040
Sau3AI	GATC	4 cut(s)	562, 577, 718, 1242
Sau96I	GGNCC	2 cut(s)	323, 532
SchI	GAGTC	2 cut(s)	316, 980
ScrFI	CCNGG	4 cut(s)	51, 495, 828, 1127
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	3 cut(s)	838, 1318, 1321
SinI	GGWCC	2 cut(s)	323, 532
SmiMI	CAYNNNNRTG	4 cut(s)	726, 846, 865, 1346
SmlI	CTYRAG	2 cut(s)	1223, 1390
SmoI	CTYRAG	2 cut(s)	1223, 1390
SsiI	CCGC	5 cut(s)	40, 55, 751, 1031, 1264
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	3 cut(s)	320, 624, 1208
StyD4I	CCNGG	4 cut(s)	49, 493, 826, 1125
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	704, 1384
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	1379
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	43, 57
TfiI	GAWTC	3 cut(s)	455, 485, 1103
Tru1I	TTAA	6 cut(s)	423, 786, 942, 1068, 1224, 1236
Tru9I	TTAA	6 cut(s)	423, 786, 942, 1068, 1224, 1236
TscAI	CASTG	2 cut(s)	21, 1197
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	1039
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	7 cut(s)	67, 195, 425, 541, 554, 891, 1095
TspRI	CASTG	2 cut(s)	21, 1197
Vha464I	CTTAAG	1 cut(s)	1223
VpaK11BI	GGWCC	2 cut(s)	323, 532
XapI	RAATTY	1 cut(s)	782
XbaI	TCTAGA	1 cut(s)	1207
XceI	RCATGY	1 cut(s)	855
XmnI	GAANNNNTTC	3 cut(s)	963, 1184, 1375
XspI	CTAG	3 cut(s)	320, 624, 1208
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.