FvH4_3g27120

homoserine dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008338
Physical Location & Seq
Reverse (-)
20203651 .. 20213087
9437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27120.t8

Sequence Viewer

Length: 1038 bp
ATGAAGAAGGTGATCCCCCTAATTCTCATGGGCTGCGGAGGCGTTGGCCGTCAGCTTCTCCAACACATCGTCTCCTGCCGACCCCTTCACGCCAAACAGGGAATCCACCTTAGAGTTGTGGGAGTATCTGACAGTAAATCCTTAGTTGTCGCGTCGTCTATGGAGTTGTCTGATAATTCTTTATTGCAACTCTGCCGGATCAAGTCCGATGGTTCTTCTCTGCAGACCCTTGCCGCTTCTGGCCAAGTCGATGTATTCACGAATCCCGAATCAATCAAAAAGATTACCGATATTGCTGCACTATTGGGTAAATCAACAGGTTTGGCTCTTGTAGATTGCTCTGCGAGTTCGGAGACTATTCCACTGCTCACCCAGGCTGTTGATTTGGGGTGTTGCATTGTGATGGCAAACAAGAAGCCTCTTACTTCGGCAATGGAGGATTATGACAAACTAATTTCACGCCCACGTCACATACGCCATGAGTCAACTGTTGGTGCCGGCCTTCCTGTCATATCATCCTTACATCGCGTACTTTCCTCTGGTGATCCTGTCCGCCGCATTATTGGGAGTTTGAGTGGAACCTTGGGGTATGTTATGAGTGAGGTCGAAGATGGAAAGCCAATTGGTGAAGTTGTGCGATCTGCTAAAAATCTGGGTTACACCGAACCAGATCCACGTGATGACCTCAGTGGGATGGATGTTGCAAGAAAGGCTTTGATACTTGCTAGGCTTCTCGGTTGGCGTATTAATTTGGATGACATTAAGATTCAGAGCTTGTATCCTAAAGAAATGGCACCTGGTATTATGTCTGTGGAAGAATTTCTGGGAAGTGGGCTACAATTGCTTGATAAAGGTATCAAAGAGAGAGTCTCTATGGCATCTTTGAGTGGGAATGTGCTACGTTATGTCTGTGTAATTGAGGCCTCAAGGTGTGAAGTTGGCATTCAAGAGCTTGCAAAGGATTCTCCTTTAGGAAGACTGAGAGGAAGTGACAATGTGTTTTCATGGATGAGATGTCATTCGGAAACAGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homoserine_dh NAD_binding_3

Protein Analysis

346

Amino Acids

37.14

Weight (kDa)

8.33

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homoserine_dh PF00742 169 - 316 7.3e-30 Homoserine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 494, 793
AccII CGCG 2 cut(s) 152, 528
AciI CCGC 4 cut(s) 36, 234, 553, 556
AclWI GGATC 4 cut(s) 7, 206, 539, 665
AcoI YGGCCR 2 cut(s) 46, 241
AcsI RAATTY 1 cut(s) 818
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 1 cut(s) 531
AgsI TTSAA 1 cut(s) 947
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 2 cut(s) 372, 796
AluBI AGCT 3 cut(s) 55, 774, 952
AluI AGCT 3 cut(s) 55, 774, 952
Alw26I GTCTC 3 cut(s) 76, 347, 874
AlwI GGATC 4 cut(s) 7, 206, 539, 665
AoxI GGCC 4 cut(s) 46, 241, 499, 921
ApeKI GCWGC 2 cut(s) 33, 296
ApoI RAATTY 1 cut(s) 818
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
AseI ATTAAT 1 cut(s) 747
Asp700I GAANNNNTTC 2 cut(s) 819, 1029
AsuHPI GGTGA 4 cut(s) 22, 361, 554, 638
BalI TGGCCA 1 cut(s) 243
BanI GGYRCC 2 cut(s) 494, 793
BbrPI CACGTG 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 982
BbvI GCAGC 2 cut(s) 20, 283
BccI CCATC 4 cut(s) 203, 397, 605, 688
BceAI ACGGC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 374, 798
BciVI GTATCC 1 cut(s) 789
BcoDI GTCTC 3 cut(s) 76, 347, 874
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 789
BisI GCNGC 4 cut(s) 34, 234, 297, 556
BlsI GCNGC 4 cut(s) 35, 235, 298, 557
Bme1390I CCNGG 2 cut(s) 374, 798
BmgBI CACGTC 1 cut(s) 467
BmiI GGNNCC 3 cut(s) 496, 580, 795
BmrFI CCNGG 2 cut(s) 374, 798
BmsI GCATC 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 982
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BpuEI CTTGAG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 372, 582
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 559, 589
Bse118I RCCGGY 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 2 cut(s) 374, 798
BseDI CCNNGG 2 cut(s) 372, 582
BseGI GGATG 5 cut(s) 515, 699, 703, 760, 1014
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 700, 971
BseXI GCAGC 2 cut(s) 20, 283
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 2 cut(s) 152, 528
BshFI GGCC 4 cut(s) 48, 243, 501, 923
BshNI GGYRCC 2 cut(s) 494, 793
BsiSI CCGG 2 cut(s) 196, 498
BsmAI GTCTC 3 cut(s) 76, 347, 874
BsmBI CGTCTC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 942
BsnI GGCC 4 cut(s) 48, 243, 501, 923
Bsp143I GATC 5 cut(s) 12, 198, 544, 638, 670
BspACI CCGC 4 cut(s) 36, 234, 553, 556
BspANI GGCC 4 cut(s) 48, 243, 501, 923
BspCNI CTCAG 2 cut(s) 699, 972
BspFNI CGCG 2 cut(s) 152, 528
BspLI GGNNCC 3 cut(s) 496, 580, 795
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 4 cut(s) 7, 206, 539, 665
BspT107I GGYRCC 2 cut(s) 494, 793
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 372, 582
BssMI GATC 5 cut(s) 12, 198, 544, 638, 670
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 374, 798
Bst4CI ACNGT 3 cut(s) 134, 490, 1030
BstBAI YACGTR 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 499, 954
BstDEI CTNAG 4 cut(s) 110, 142, 686, 980
BstF5I GGATG 5 cut(s) 515, 699, 703, 760, 1014
BstFNI CGCG 2 cut(s) 152, 528
BstKTI GATC 5 cut(s) 15, 201, 547, 641, 673
BstMAI GTCTC 3 cut(s) 76, 347, 874
BstMBI GATC 5 cut(s) 12, 198, 544, 638, 670
BstMWI GCNNNNNNNGC 3 cut(s) 39, 710, 841
BstNI CCWGG 2 cut(s) 374, 798
BstSCI CCNGG 2 cut(s) 372, 796
BstSFI CTRYAG 1 cut(s) 221
BstUI CGCG 2 cut(s) 152, 528
BstV1I GCAGC 2 cut(s) 20, 283
BstV2I GAAGAC 1 cut(s) 982
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuI GTATCC 1 cut(s) 789
BsuRI GGCC 4 cut(s) 48, 243, 501, 923
BtgZI GCGATG 1 cut(s) 509
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 5 cut(s) 515, 699, 703, 760, 1014
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 362, 694
Cac8I GCNNGC 2 cut(s) 499, 954
Cfr10I RCCGGY 1 cut(s) 497
CseI GACGC 1 cut(s) 141
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 1 cut(s) 530
CviAII CATG 3 cut(s) 28, 479, 1005
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 4 cut(s) 110, 142, 686, 980
DpnI GATC 5 cut(s) 14, 200, 546, 640, 672
DpnII GATC 5 cut(s) 12, 198, 544, 638, 670
EaeI YGGCCR 2 cut(s) 46, 241
EciI GGCGGA 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 582
Eco147I AGGCCT 1 cut(s) 923
Eco72I CACGTG 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 372, 796
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 3 cut(s) 31, 482, 1008
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FatI CATG 3 cut(s) 27, 478, 1004
Fnu4HI GCNGC 4 cut(s) 34, 234, 297, 556
FokI GGATG 5 cut(s) 502, 706, 710, 767, 1021
Fsp4HI GCNGC 4 cut(s) 34, 234, 297, 556
FspBI CTAG 1 cut(s) 726
GluI GCNGC 4 cut(s) 34, 234, 297, 556
HaeIII GGCC 4 cut(s) 48, 243, 501, 923
HapII CCGG 2 cut(s) 196, 498
HgaI GACGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 31, 482, 1008
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 7 cut(s) 102, 262, 269, 482, 766, 867, 962
HpaII CCGG 2 cut(s) 196, 498
HphI GGTGA 4 cut(s) 22, 361, 554, 638
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 6 cut(s) 130, 172, 208, 352, 771, 1024
Hpy188III TCNNGA 3 cut(s) 259, 266, 947
Hpy8I GTNNAC 1 cut(s) 486
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 95, 512
HpyCH4III ACNGT 3 cut(s) 134, 490, 1030
HpyCH4IV ACGT 3 cut(s) 466, 676, 901
HpyCH4V TGCA 6 cut(s) 187, 223, 299, 396, 704, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 710, 841
HpyF3I CTNAG 4 cut(s) 110, 142, 686, 980
HpySE526I ACGT 3 cut(s) 466, 676, 901
Hsp92II CATG 3 cut(s) 31, 482, 1008
KroI GCCGGC 1 cut(s) 497
KroNI GCCGGC 1 cut(s) 499
Kzo9I GATC 5 cut(s) 12, 198, 544, 638, 670
Lsp1109I GCAGC 2 cut(s) 20, 283
LweI GCATC 1 cut(s) 887
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 1 cut(s) 726
MaeII ACGT 3 cut(s) 466, 676, 901
MaeIII GTNAC 3 cut(s) 467, 656, 989
MalI GATC 5 cut(s) 14, 200, 546, 640, 672
MboI GATC 5 cut(s) 12, 198, 544, 638, 670
MboII GAAGA 5 cut(s) 16, 207, 620, 827, 987
MfeI CAATTG 2 cut(s) 621, 839
MflI RGATCY 1 cut(s) 670
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 8 cut(s) 21, 175, 453, 621, 748, 818, 839, 915
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 2 cut(s) 491, 876
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 9 cut(s) 32, 429, 430, 547, 595, 695, 913, 934, 977
Mox20I TGGCCA 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 497
MroXI GAANNNNTTC 2 cut(s) 819, 1029
MscI TGGCCA 1 cut(s) 243
MseI TTAA 2 cut(s) 747, 762
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 2 cut(s) 196, 498
MspR9I CCNGG 2 cut(s) 374, 798
MunI CAATTG 2 cut(s) 621, 839
Mva1269I GAATGC 1 cut(s) 942
MvaI CCWGG 2 cut(s) 374, 798
MvnI CGCG 2 cut(s) 152, 528
MwoI GCNNNNNNNGC 3 cut(s) 39, 710, 841
NaeI GCCGGC 1 cut(s) 499
NdeII GATC 5 cut(s) 12, 198, 544, 638, 670
NgoMIV GCCGGC 1 cut(s) 497
NlaIII CATG 3 cut(s) 31, 482, 1008
NlaIV GGNNCC 3 cut(s) 496, 580, 795
NmuCI GTSAC 2 cut(s) 467, 989
PceI AGGCCT 1 cut(s) 923
PctI GAATGC 1 cut(s) 942
PdiI GCCGGC 1 cut(s) 499
PdmI GAANNNNTTC 2 cut(s) 819, 1029
PfeI GAWTC 5 cut(s) 102, 262, 269, 766, 962
PkrI GCNGC 4 cut(s) 35, 235, 298, 557
PleI GAGTC 2 cut(s) 490, 875
PmaCI CACGTG 1 cut(s) 677
PmlI CACGTG 1 cut(s) 677
PpsI GAGTC 2 cut(s) 490, 875
Ppu21I YACGTR 1 cut(s) 677
PshBI ATTAAT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 372, 796
PspCI CACGTG 1 cut(s) 677
PspGI CCWGG 2 cut(s) 372, 796
PspN4I GGNNCC 3 cut(s) 496, 580, 795
PstI CTGCAG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 747, 762
SatI GCNGC 4 cut(s) 34, 234, 297, 556
Sau3AI GATC 5 cut(s) 12, 198, 544, 638, 670
SchI GAGTC 2 cut(s) 491, 876
ScrFI CCNGG 2 cut(s) 374, 798
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 1 cut(s) 887
SfcI CTRYAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
Sse9I AATT 8 cut(s) 21, 175, 453, 621, 748, 818, 839, 915
SseBI AGGCCT 1 cut(s) 923
SsiI CCGC 4 cut(s) 36, 234, 553, 556
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 1 cut(s) 923
StyD4I CCNGG 2 cut(s) 372, 796
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 3 cut(s) 134, 490, 1030
TaiI ACGT 3 cut(s) 469, 679, 904
TaqI TCGA 2 cut(s) 249, 606
TasI AATT 8 cut(s) 21, 175, 453, 621, 748, 818, 839, 915
TauI GCSGC 2 cut(s) 236, 558
TfiI GAWTC 5 cut(s) 102, 262, 269, 766, 962
Tru1I TTAA 2 cut(s) 747, 762
Tru9I TTAA 2 cut(s) 747, 762
TscAI CASTG 2 cut(s) 369, 694
TseFI GTSAC 2 cut(s) 467, 989
TseI GCWGC 2 cut(s) 33, 296
Tsp45I GTSAC 2 cut(s) 467, 989
TspDTI ATGAA 2 cut(s) 17, 993
TspRI CASTG 2 cut(s) 369, 694
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 1 cut(s) 818
XmnI GAANNNNTTC 2 cut(s) 819, 1029
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.