Rh5BG337400

homoserine dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008338
Physical Location & Seq
Forward (+)
47342324 .. 47349793
7470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG337400.1

Sequence Viewer

Length: 966 bp
ATGGAGTTGGCTGATAATTCTTTATTGCAACTTTGCCGGATCAAGTCCGATGGTTCTTCTCTGCACACGCTTGCCGCCTCTGGTCAAGTAGAGGTATTCACCGATTCTGAATCAACCAAAAAGATTATCGATGTTGCTGCACTCTTGGGTAAATCAACAGGTTTGGCTCTTGTAGATTGCTCTGCGAGTTCTGAGACTATTCCACTGCTCACCCAAGCGGTTGATTTGGGATGTTGCATTGTCATGGCAAACAAGAAGCCTCTTACTTCAACAATGGAGGATTATGACAAACTAATTTCACACCCACGTCACATACGTCATGAGTCAACTGTTGGTGCCGGCCTTCCTGTCATATCATCCTTGCATCGCATTCTTTCATCTGGAGATCCTGTCTGCCGCATTATTGGGAGTTTGAGTGGAACATTGGGGTATGTTATGAGTGAGGTCGAAGATGGAAAGCCAATTAGCGAAGTTGTGCGATCTGCTAAAACTCTGGGTTACACTGAACCAGATCCACGTGATGACCTCAGTGGGATGGATGTTGCAAGAAAGGCTTTGATACTTGCTAGGCTTCTCGGTTGGCGTATTAATTTGGATGACATTAAGATTGAGTGCTTGTATCCTAAAGAAATGGCACCCGGTGTAATGTCTGTGGAAGAATTTCTGGGAACTGGGCTACTATTGCTTGATAAAGATATCAAAGAGAGAGTCTCCAAAGCTTCTTTGAGTGGGAATGTGCTACGTTATGTCTGTGTGATTGAGGCCTCAAGGTGTGAAGTTGGCATTCAAGAGCTTGCAAAGGATTCTCCTTTAGGAAGACTGAGAGGAAGTGACAATGTGCTGGAGATTTACAGTAGATGTTATAATGACCAACCACTGGTCATTCAAGGAGCTGGAGCTGGCAATGATACTACTGCTGCTGGAGTCCTTGCTGATATCATTGATATTCAAGATTTATTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homoserine_dh NAD_binding_3

Protein Analysis

321

Amino Acids

34.43

Weight (kDa)

4.95

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homoserine_dh PF00742 116 - 314 1.3e-46 Homoserine dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
AccB1I GGYRCC 2 cut(s) 335, 634
AccB7I CCANNNNNTGG 1 cut(s) 877
AciI CCGC 3 cut(s) 75, 218, 397
AclWI GGATC 3 cut(s) 47, 380, 506
AcsI RAATTY 1 cut(s) 659
AcvI CACGTG 1 cut(s) 518
AdeI CACNNNGTG 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 877
AgsI TTSAA 4 cut(s) 270, 788, 887, 950
AjiI CACGTC 1 cut(s) 308
AluBI AGCT 4 cut(s) 719, 793, 893, 899
AluI AGCT 4 cut(s) 719, 793, 893, 899
Alw26I GTCTC 2 cut(s) 188, 715
AlwI GGATC 3 cut(s) 47, 380, 506
AoxI GGCC 2 cut(s) 340, 762
ApeKI GCWGC 2 cut(s) 137, 917
ApoI RAATTY 1 cut(s) 659
ArsI GACNNNNNNTTYG 2 cut(s) 693, 725
AseI ATTAAT 1 cut(s) 588
Asp700I GAANNNNTTC 1 cut(s) 660
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 2 cut(s) 91, 202
BanI GGYRCC 2 cut(s) 335, 634
BbrPI CACGTG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 823
BbvI GCAGC 2 cut(s) 124, 904
BccI CCATC 3 cut(s) 44, 446, 529
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciVI GTATCC 1 cut(s) 630
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 188, 715
BfaI CTAG 1 cut(s) 567
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 4 cut(s) 75, 138, 397, 918
BlsI GCNGC 4 cut(s) 76, 139, 398, 919
Bme1390I CCNGG 1 cut(s) 639
BmgBI CACGTC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 337, 636
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 823
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpmI CTGGAG 4 cut(s) 402, 863, 915, 942
BpuEI CTTGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 518
BsaXI ACNNNNNCTCC 4 cut(s) 375, 400, 405, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 877
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 676, 882
Bse3DI GCAATG 1 cut(s) 910
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 5 cut(s) 236, 356, 540, 544, 601
BseLI CCNNNNNNNGG 1 cut(s) 877
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 3 cut(s) 183, 541, 812
BseNI ACTGG 2 cut(s) 676, 882
BseXI GCAGC 2 cut(s) 124, 904
BsgI GTGCAG 2 cut(s) 47, 123
BshFI GGCC 2 cut(s) 342, 764
BshNI GGYRCC 2 cut(s) 335, 634
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 3 cut(s) 37, 339, 639
BslI CCNNNNNNNGG 1 cut(s) 877
BsmAI GTCTC 2 cut(s) 188, 715
BsmI GAATGC 2 cut(s) 369, 783
BsnI GGCC 2 cut(s) 342, 764
Bsp143I GATC 4 cut(s) 39, 385, 479, 511
BspACI CCGC 3 cut(s) 75, 218, 397
BspANI GGCC 2 cut(s) 342, 764
BspCNI CTCAG 3 cut(s) 184, 540, 813
BspDI ATCGAT 1 cut(s) 129
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 337, 636
BspPI GGATC 3 cut(s) 47, 380, 506
BspT107I GGYRCC 2 cut(s) 335, 634
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 2 cut(s) 676, 882
BssAI RCCGGY 1 cut(s) 338
BssMI GATC 4 cut(s) 39, 385, 479, 511
Bst4CI ACNGT 2 cut(s) 331, 854
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 4 cut(s) 72, 340, 795, 901
BstDEI CTNAG 3 cut(s) 192, 527, 821
BstF5I GGATG 5 cut(s) 236, 356, 540, 544, 601
BstKTI GATC 4 cut(s) 42, 388, 482, 514
BstMAI GTCTC 2 cut(s) 188, 715
BstMBI GATC 4 cut(s) 39, 385, 479, 511
BstMWI GCNNNNNNNGC 2 cut(s) 551, 682
BstSCI CCNGG 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 124, 904
BstV2I GAAGAC 1 cut(s) 823
BstX2I RGATCY 2 cut(s) 385, 511
BstYI RGATCY 2 cut(s) 385, 511
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 342, 764
BsuTUI ATCGAT 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 5 cut(s) 236, 356, 540, 544, 601
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 4 cut(s) 203, 501, 535, 875
Cac8I GCNNGC 4 cut(s) 72, 340, 795, 901
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 129
CviAII CATG 2 cut(s) 244, 320
DdeI CTNAG 3 cut(s) 192, 527, 821
DpnI GATC 4 cut(s) 41, 387, 481, 513
DpnII GATC 4 cut(s) 39, 385, 479, 511
DraIII CACNNNGTG 1 cut(s) 641
Eco147I AGGCCT 1 cut(s) 764
Eco32I GATATC 2 cut(s) 697, 937
Eco72I CACGTG 1 cut(s) 518
EcoRV GATATC 2 cut(s) 697, 937
FaeI CATG 2 cut(s) 247, 323
FaiI YATR 9 cut(s) 245, 285, 314, 321, 353, 432, 437, 747, 864
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FatI CATG 2 cut(s) 243, 319
Fnu4HI GCNGC 4 cut(s) 75, 138, 397, 918
FokI GGATG 5 cut(s) 243, 343, 547, 551, 608
Fsp4HI GCNGC 4 cut(s) 75, 138, 397, 918
FspBI CTAG 1 cut(s) 567
GluI GCNGC 4 cut(s) 75, 138, 397, 918
GsuI CTGGAG 4 cut(s) 402, 863, 915, 942
HaeIII GGCC 2 cut(s) 342, 764
HapII CCGG 3 cut(s) 37, 339, 639
Hin1II CATG 2 cut(s) 247, 323
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 6 cut(s) 104, 110, 323, 708, 803, 924
HpaII CCGG 3 cut(s) 37, 339, 639
HphI GGTGA 2 cut(s) 91, 202
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 3 cut(s) 49, 109, 193
Hpy188III TCNNGA 4 cut(s) 320, 381, 788, 950
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 2 cut(s) 331, 854
HpyCH4IV ACGT 4 cut(s) 307, 316, 517, 742
HpyCH4V TGCA 7 cut(s) 28, 64, 140, 237, 364, 545, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 682
HpyF3I CTNAG 3 cut(s) 192, 527, 821
HpySE526I ACGT 4 cut(s) 307, 316, 517, 742
Hsp92II CATG 2 cut(s) 247, 323
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 4 cut(s) 39, 385, 479, 511
LmnI GCTCC 2 cut(s) 890, 896
Lsp1109I GCAGC 2 cut(s) 124, 904
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 567
MaeII ACGT 4 cut(s) 307, 316, 517, 742
MaeIII GTNAC 3 cut(s) 308, 497, 830
MalI GATC 4 cut(s) 41, 387, 481, 513
MboI GATC 4 cut(s) 39, 385, 479, 511
MboII GAAGA 4 cut(s) 48, 461, 668, 828
MflI RGATCY 2 cut(s) 385, 511
MluCI AATT 5 cut(s) 16, 294, 462, 589, 659
MlyI GAGTC 3 cut(s) 332, 717, 933
MnlI CCTC 9 cut(s) 85, 88, 270, 271, 436, 536, 754, 775, 818
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 2 cut(s) 588, 603
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 3 cut(s) 37, 339, 639
MspR9I CCNGG 1 cut(s) 639
Mva1269I GAATGC 2 cut(s) 369, 783
MwoI GCNNNNNNNGC 2 cut(s) 551, 682
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 639
NdeII GATC 4 cut(s) 39, 385, 479, 511
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 2 cut(s) 247, 323
NlaIV GGNNCC 2 cut(s) 337, 636
NmuCI GTSAC 2 cut(s) 308, 830
PagI TCATGA 1 cut(s) 319
PceI AGGCCT 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 2 cut(s) 369, 783
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 104, 110, 803
PflMI CCANNNNNTGG 1 cut(s) 877
PkrI GCNGC 4 cut(s) 76, 139, 398, 919
PleI GAGTC 3 cut(s) 331, 716, 932
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 3 cut(s) 331, 716, 932
Ppu21I YACGTR 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 588
PsiI TTATAA 1 cut(s) 864
PspCI CACGTG 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 337, 636
PsuI RGATCY 2 cut(s) 385, 511
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 588, 603
SatI GCNGC 4 cut(s) 75, 138, 397, 918
Sau3AI GATC 4 cut(s) 39, 385, 479, 511
SchI GAGTC 3 cut(s) 332, 717, 933
ScrFI CCNGG 1 cut(s) 639
SfaNI GCATC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
Sse9I AATT 5 cut(s) 16, 294, 462, 589, 659
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 3 cut(s) 75, 218, 397
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 2 cut(s) 331, 854
TaiI ACGT 4 cut(s) 310, 319, 520, 745
TaqI TCGA 2 cut(s) 129, 447
TasI AATT 5 cut(s) 16, 294, 462, 589, 659
TauI GCSGC 2 cut(s) 77, 399
TfiI GAWTC 3 cut(s) 104, 110, 803
Tru1I TTAA 2 cut(s) 588, 603
Tru9I TTAA 2 cut(s) 588, 603
TscAI CASTG 4 cut(s) 210, 508, 535, 882
TseFI GTSAC 2 cut(s) 308, 830
TseI GCWGC 2 cut(s) 137, 917
Tsp45I GTSAC 2 cut(s) 308, 830
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 4 cut(s) 210, 508, 535, 882
Van91I CCANNNNNTGG 1 cut(s) 877
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.