Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1001216 .. 1013844

Gene Structure 12629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G009800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAAAAGAATATCTCTCTGATTCTGATGGGTGTTGGAGGCGTTGGGCGTCAGCTCCTTCAACACATTGTCTCCTGTCGATCTCTTCACGCTAAACAGGGAATTCACTTGAGAGTTGTGGGAGTATCTGATAGTAAATCCTTAGTTGTTGCATCGGATGCATTTACTATGGAGTTGGGTGATACATTTTTAATGGAAGTTTGCCGGGTCAAGTCGGATGGTGCTTCTTTGTCCACAATTAGTGGTTATGATGAATCCAAGGTATTCACAAATTCAGAATCAACCAAAAAGATTATAGATGTTGCTGCATTCTTGGGAAAATCAACAGGCTTGGCTCTTGTAGATTGCTCTGCCAGTTCTGAGACTATTCCCGTGCTAACCCAAGCAGTTGATTTGGATTGTTGCATTGTCATGGCAAATAAGAAACCTCTGACTTCGACAATGGAGGATTATGACAAATTAATTTCATACCCAAGGCGTATTCGCCACGAGTCAACTGTTGGTGCTGGCCTTCCTGTCATAGCATCCTTAAATCGCATACTTTCTTCTGGAGATCCTGTCCACCGCATTATTGGGAGTTTGAGCGGGACATTGGGTTATGTAATGAGCGAGGTTGAAGATGGAAAGCCACTAAGCCAAGTTGTTCAATCTGCTAAAAACCTGGGTTACACTGAACCAGATCCACGTGATGACCTTAGTGGGATGGATGTCGCAAGAAAGGCTTTGATACTTGCAAGGCTTCTTGGTCGGCGGATTAATTTGGATGACATTAAGATTGAGAGTTTGTATCCTGAAGAAATGGCACCTAGTGTAATGTCTATTGAAGACTTTCTGGGAACTGGGATATTATCGCTCGATAAAGATATCCAAGAGAGAGTCTCTAAGGCTTCTTTGAATGGGAATGTGCTACGTTATGTCTGTGTGATTGACGCCTCAAGGTGTCAAGTTGGCATTCAAGAGCTTCCAAAGGATTCTCCTTTAGGAAGACTGAGAGGAAGTGACAATGTGTTGGAGATTTACACGCGATGTTATAATGACCAACCGCTGGTCATTCAAGGAGCTGGAGCTGGCAATGATACTACAGCAGCTGGTGTCCTTGCTGATATCATTGACATTCAGGATTTATTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homoserine_dh NAD_binding_3

Protein Analysis

378

Amino Acids

40.56

Weight (kDa)

5.28

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21060 AT5G21060 AT5G21060
fragaria_vesca	FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120
malus_domestica	MD11G1179300.v1.1
prunus_persica	Prupe.5G009800_v2.0.a1
pyrus_communis	pycom11g15480
rosa_chinensis	RchiOBHm_Chr5g0049661
rosa_laevigata	RLG00000034631
rosa_roxburghii	Rroxscaffold_1G00031550
rosa_rugosa	Rorug05G0250300
rosa_samantha	Rh5AG326500 Rh5BG337400 Rh5DG349600
rosa_wichuraiana	Rw5G030830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
AccB1I	GGYRCC	1 cut(s)	802
AccB7I	CCANNNNNTGG	1 cut(s)	1045
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	1024
AciI	CCGC	4 cut(s)	565, 585, 751, 1043
AclWI	GGATC	2 cut(s)	548, 674
AcsI	RAATTY	2 cut(s)	102, 271
AcuI	CTGAAG	1 cut(s)	813
AcvI	CACGTG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	49, 930
AdeI	CACNNNGTG	1 cut(s)	809
AfiI	CCNNNNNNNGG	1 cut(s)	1045
AgsI	TTSAA	7 cut(s)	62, 617, 647, 824, 895, 956, 1055
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	5 cut(s)	55, 961, 1061, 1067, 1088
AluI	AGCT	5 cut(s)	55, 961, 1061, 1067, 1088
Alw26I	GTCTC	3 cut(s)	76, 356, 883
AlwI	GGATC	2 cut(s)	548, 674
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	305, 1085
ApoI	RAATTY	2 cut(s)	102, 271
AseI	ATTAAT	2 cut(s)	461, 756
Asp700I	GAANNNNTTC	1 cut(s)	828
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	802
BauI	CACGAG	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	686
BbsI	GAAGAC	2 cut(s)	831, 991
BbvI	GCAGC	2 cut(s)	292, 1097
BccI	CCATC	4 cut(s)	22, 212, 614, 697
BciT130I	CCWGG	1 cut(s)	662
BciVI	GTATCC	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	76, 356, 883
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	1080
BfuI	GTATCC	1 cut(s)	798
BisI	GCNGC	2 cut(s)	306, 1086
BlsI	GCNGC	2 cut(s)	307, 1087
Bme1390I	CCNGG	2 cut(s)	206, 662
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	2 cut(s)	206, 662
BmrI	ACTGGG	1 cut(s)	849
BmsI	GCATC	3 cut(s)	148, 161, 533
BmuI	ACTGGG	1 cut(s)	849
BpiI	GAAGAC	2 cut(s)	831, 991
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	2 cut(s)	570, 1083
BpuEI	CTTGAG	2 cut(s)	130, 919
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	49, 930
BsaJI	CCNNGG	3 cut(s)	258, 473, 661
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	1045
Bse1I	ACTGG	2 cut(s)	354, 844
Bse3DI	GCAATG	1 cut(s)	1078
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	258, 473, 661
BseGI	GGATG	6 cut(s)	163, 223, 524, 708, 712, 769
BseLI	CCNNNNNNNGG	1 cut(s)	1045
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	2 cut(s)	351, 980
BseNI	ACTGG	2 cut(s)	354, 844
BseXI	GCAGC	2 cut(s)	292, 1097
Bsh1236I	CGCG	1 cut(s)	1024
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	1 cut(s)	1045
BsmAI	GTCTC	3 cut(s)	76, 356, 883
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	2 cut(s)	308, 951
BsnI	GGCC	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	80, 553, 679
BspACI	CCGC	4 cut(s)	565, 585, 751, 1043
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	352, 981
BspFNI	CGCG	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	804
BspPI	GGATC	2 cut(s)	548, 674
BspT107I	GGYRCC	1 cut(s)	802
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	1078
BsrI	ACTGG	2 cut(s)	354, 844
BssECI	CCNNGG	3 cut(s)	258, 473, 661
BssMI	GATC	3 cut(s)	80, 553, 679
BssNI	GRCGYC	2 cut(s)	49, 930
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	258, 473
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	2 cut(s)	49, 930
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	508, 1069
BstDEI	CTNAG	6 cut(s)	142, 360, 632, 695, 882, 989
BstF5I	GGATG	6 cut(s)	163, 223, 524, 708, 712, 769
BstFNI	CGCG	1 cut(s)	1024
BstKTI	GATC	3 cut(s)	83, 556, 682
BstMAI	GTCTC	3 cut(s)	76, 356, 883
BstMBI	GATC	3 cut(s)	80, 553, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 719
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	204, 660
BstSFI	CTRYAG	1 cut(s)	1080
BstUI	CGCG	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	292, 1097
BstV2I	GAAGAC	2 cut(s)	831, 991
BstX2I	RGATCY	2 cut(s)	553, 679
BstYI	RGATCY	2 cut(s)	553, 679
BsuI	GTATCC	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	1039
BtsCI	GGATG	6 cut(s)	163, 223, 524, 708, 712, 769
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	508, 1069
CaiI	CAGNNNCTG	1 cut(s)	1088
CseI	GACGC	2 cut(s)	38, 938
CviAII	CATG	1 cut(s)	412
DdeI	CTNAG	6 cut(s)	142, 360, 632, 695, 882, 989
DpnI	GATC	3 cut(s)	82, 555, 681
DpnII	GATC	3 cut(s)	80, 553, 679
DraIII	CACNNNGTG	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	766
Eco130I	CCWWGG	2 cut(s)	258, 473
Eco32I	GATATC	2 cut(s)	865, 1105
Eco57I	CTGAAG	1 cut(s)	813
Eco72I	CACGTG	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	660
EcoRV	GATATC	2 cut(s)	865, 1105
EcoT14I	CCWWGG	2 cut(s)	258, 473
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	258, 473
FaeI	CATG	1 cut(s)	415
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	578
Fnu4HI	GCNGC	2 cut(s)	306, 1086
FokI	GGATG	6 cut(s)	170, 230, 511, 715, 719, 776
Fsp4HI	GCNGC	2 cut(s)	306, 1086
FspBI	CTAG	1 cut(s)	807
GluI	GCNGC	2 cut(s)	306, 1086
GsuI	CTGGAG	2 cut(s)	570, 1083
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	205
HgaI	GACGC	2 cut(s)	38, 938
Hin1I	GRCGYC	2 cut(s)	49, 930
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	6 cut(s)	22, 254, 278, 491, 876, 971
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	234, 495, 562
Hpy188I	TCNGA	8 cut(s)	21, 27, 130, 157, 217, 277, 361, 432
Hpy188III	TCNNGA	4 cut(s)	549, 791, 956, 1118
Hpy8I	GTNNAC	3 cut(s)	234, 495, 562
HpyAV	CCTTC	2 cut(s)	68, 521
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	2 cut(s)	685, 910
HpyCH4V	TGCA	5 cut(s)	152, 161, 308, 405, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 719
HpyF3I	CTNAG	6 cut(s)	142, 360, 632, 695, 882, 989
HpySE526I	ACGT	2 cut(s)	685, 910
Hsp92I	GRCGYC	2 cut(s)	49, 930
Hsp92II	CATG	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	80, 553, 679
LmnI	GCTCC	3 cut(s)	60, 1058, 1064
Lsp1109I	GCAGC	2 cut(s)	292, 1097
LweI	GCATC	3 cut(s)	148, 161, 533
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	2 cut(s)	685, 910
MaeIII	GTNAC	2 cut(s)	665, 998
MalI	GATC	3 cut(s)	82, 555, 681
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	3 cut(s)	80, 553, 679
MboII	GAAGA	6 cut(s)	77, 537, 629, 806, 836, 996
MflI	RGATCY	2 cut(s)	553, 679
MluCI	AATT	6 cut(s)	102, 237, 271, 458, 462, 757
MlyI	GAGTC	2 cut(s)	500, 885
MmeI	TCCRAC	3 cut(s)	16, 195, 990
MnlI	CCTC	6 cut(s)	32, 438, 439, 604, 943, 986
Mph1103I	ATGCAT	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	5 cut(s)	191, 461, 530, 756, 771
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	1045, 1088
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	206, 662
Mva1269I	GAATGC	2 cut(s)	308, 951
MvaI	CCWGG	1 cut(s)	662
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	2 cut(s)	158, 719
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	80, 553, 679
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	804
NmuCI	GTSAC	1 cut(s)	998
NsiI	ATGCAT	1 cut(s)	163
PctI	GAATGC	2 cut(s)	308, 951
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	4 cut(s)	22, 254, 278, 971
PflMI	CCANNNNNTGG	1 cut(s)	1045
PkrI	GCNGC	2 cut(s)	307, 1087
PleI	GAGTC	2 cut(s)	499, 884
PmaCI	CACGTG	1 cut(s)	686
PmlI	CACGTG	1 cut(s)	686
PpsI	GAGTC	2 cut(s)	499, 884
Ppu21I	YACGTR	1 cut(s)	686
PshBI	ATTAAT	2 cut(s)	461, 756
PsiI	TTATAA	1 cut(s)	1032
Psp6I	CCWGG	1 cut(s)	660
PspCI	CACGTG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	804
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	2 cut(s)	553, 679
PvuII	CAGCTG	1 cut(s)	1088
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	5 cut(s)	191, 461, 530, 756, 771
SatI	GCNGC	2 cut(s)	306, 1086
Sau3AI	GATC	3 cut(s)	80, 553, 679
SchI	GAGTC	2 cut(s)	500, 885
ScrFI	CCNGG	2 cut(s)	206, 662
SfaNI	GCATC	3 cut(s)	148, 161, 533
SfcI	CTRYAG	1 cut(s)	1080
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	109, 934
SmoI	CTYRAG	2 cut(s)	109, 934
Sse9I	AATT	6 cut(s)	102, 237, 271, 458, 462, 757
SsiI	CCGC	4 cut(s)	565, 585, 751, 1043
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	204, 660
StyI	CCWWGG	2 cut(s)	258, 473
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	2 cut(s)	688, 913
TaqI	TCGA	3 cut(s)	79, 437, 855
TasI	AATT	6 cut(s)	102, 237, 271, 458, 462, 757
TfiI	GAWTC	4 cut(s)	22, 254, 278, 971
Tru1I	TTAA	5 cut(s)	191, 461, 530, 756, 771
Tru9I	TTAA	5 cut(s)	191, 461, 530, 756, 771
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	998
TseI	GCWGC	2 cut(s)	305, 1085
Tsp45I	GTSAC	1 cut(s)	998
TspDTI	ATGAA	3 cut(s)	17, 267, 456
TspGWI	ACGGA	1 cut(s)	1119
TspRI	CASTG	1 cut(s)	676
Van91I	CCANNNNNTGG	1 cut(s)	1045
VspI	ATTAAT	2 cut(s)	461, 756
XapI	RAATTY	2 cut(s)	102, 271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	1 cut(s)	807
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.