Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008338

Physical Location & Seq

Genomic Coordinates Forward (+)

27459800 .. 27460651

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTGTTGGCTCCGTTTGACAGAGTAGGAGTTATAAAAGATCTTCCATTGAATACTTTGGCATTCTGGATCAAAGTGAGGGGCCTCCCGGTGGATTTCCATATCCATATTGATCGATGCCTCAGACGTATCGGCTGTGCTTTGGGACTGTTCCTGCATAAAGATACCATTGAATTTGATGCTGGACGTATCCGGATTAGGGTGGAGATGGATTTGATGCAACCCGTCATGTTCTGGATCGATGATGGCATTAATGTCAACCTCGACTTCTTTTTTGAAAATCTCTATGGGCAGTGCAGGGATTGTGGCTTACTAACTCATATAGGTCTCCCGTGCTCTAGACCTCCTTTGCCAGAATTTATCAGGGGGGAAACCACACCAGCACGGTGTAACTTGGAGAGAGTTTTGAATAGGGTTGCTAATTCACCTATGGCAGGCTCCACGTTAGTGCTTGGTGCTCAGGAGGTTGACAGTGGTCCGGTGACTTTGGAGCGCTTTTTTCCTGCCATGAAACCTAAACCTAGACGGGAAATCCATATTCGAACCTTGTCGGTGATGCTGGCACAGAATGTTCAAGACCTAACGCTGAACTCGACTGCAAACCAGGAAGAACTTGTGCTCGGGGACGCTACTATGGTTGATCATGTTGGTACCAGTGAGGAGGCCGGCCATGCAAATCATGCTTTAGAACCAGTTCCATCACCTAATATAAGAAGGAAGAGAATGGATGATGATGGAATATCGCCTAAGAAGCTCATATTAAGCCTAGCAGTTGGCGCACCTATTTGGACGCCATATCGATGGGTCTATGCCCTTCCTAACCTGTGCAAGGGGAGACAAAGAAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homoserine_dh NAD_binding_3

Protein Analysis

283

Amino Acids

31.83

Weight (kDa)

7.66

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21060 AT5G21060 AT5G21060
fragaria_vesca	FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120 FvH4_3g27120
malus_domestica	MD11G1179300.v1.1
prunus_persica	Prupe.5G009800_v2.0.a1
pyrus_communis	pycom11g15480
rosa_chinensis	RchiOBHm_Chr5g0049661
rosa_laevigata	RLG00000034631
rosa_roxburghii	Rroxscaffold_1G00031550
rosa_rugosa	Rorug05G0250300
rosa_samantha	Rh5AG326500 Rh5BG337400 Rh5DG349600
rosa_wichuraiana	Rw5G030830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	192
AclWI	GGATC	2 cut(s)	77, 245
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	173, 356
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	1 cut(s)	652
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	91, 199, 434, 829
AgsI	TTSAA	5 cut(s)	52, 173, 278, 409, 575
AjnI	CCWGG	1 cut(s)	603
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	1 cut(s)	754
AluI	AGCT	1 cut(s)	754
Alw21I	GWGCWC	3 cut(s)	338, 460, 621
Alw26I	GTCTC	2 cut(s)	332, 829
AlwI	GGATC	2 cut(s)	77, 245
Ama87I	CYCGRG	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	192
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	3 cut(s)	82, 663, 667
ApoI	RAATTY	2 cut(s)	173, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	693
Asp718I	GGTACC	1 cut(s)	650
AspLEI	GCGC	2 cut(s)	495, 779
AspS9I	GGNCC	2 cut(s)	82, 476
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	417, 493, 565, 693
AsuII	TTCGAA	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	650
Bbv12I	GWGCWC	3 cut(s)	338, 460, 621
BccI	CCATC	5 cut(s)	202, 239, 706, 728, 795
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	332, 829
BfaI	CTAG	3 cut(s)	339, 522, 767
BfoI	RGCGCY	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	89, 605
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	82, 476
BmiI	GGNNCC	4 cut(s)	12, 83, 439, 652
BmrFI	CCNGG	2 cut(s)	89, 605
BmsI	GCATC	4 cut(s)	107, 169, 207, 546
BoxI	GACNNNNGTC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	3 cut(s)	115, 240, 799
BsaHI	GRCGYC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	332
BsaWI	WCCGGW	2 cut(s)	192, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 199, 434, 829
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	2 cut(s)	654, 692
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	605
BseCI	ATCGAT	3 cut(s)	115, 240, 799
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	91, 199, 434, 829
BseMII	CTCAG	2 cut(s)	136, 473
BseNI	ACTGG	2 cut(s)	654, 692
BseRI	GAGGAG	1 cut(s)	674
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	84, 665, 669
BshNI	GGYRCC	1 cut(s)	650
BshVI	ATCGAT	3 cut(s)	115, 240, 799
BsiHKAI	GWGCWC	3 cut(s)	338, 460, 621
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	4 cut(s)	89, 193, 479, 666
BslFI	GGGAC	2 cut(s)	159, 638
BslI	CCNNNNNNNGG	4 cut(s)	91, 199, 434, 829
BsmAI	GTCTC	2 cut(s)	332, 829
BsmFI	GGGAC	2 cut(s)	159, 638
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	84, 665, 669
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1286I	GDGCHC	3 cut(s)	338, 460, 621
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	40, 69, 112, 237, 640
BspANI	GGCC	3 cut(s)	84, 665, 669
BspCNI	CTCAG	2 cut(s)	135, 472
BspDI	ATCGAT	3 cut(s)	115, 240, 799
BspEI	TCCGGA	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	12, 83, 439, 652
BspPI	GGATC	2 cut(s)	77, 245
BspT104I	TTCGAA	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	654, 692
BssAI	RCCGGY	1 cut(s)	665
BssMI	GATC	5 cut(s)	40, 69, 112, 237, 640
BssNI	GRCGYC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	150, 387, 473
Bst6I	CTCTTC	1 cut(s)	713
BstACI	GRCGYC	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	436, 561, 667
BstDEI	CTNAG	3 cut(s)	122, 459, 747
BstENI	CCTNNNNNAGG	2 cut(s)	432, 827
BstF5I	GGATG	1 cut(s)	733
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	2 cut(s)	495, 779
BstKTI	GATC	5 cut(s)	43, 72, 115, 240, 643
BstMAI	GTCTC	2 cut(s)	332, 829
BstMBI	GATC	5 cut(s)	40, 69, 112, 237, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	671, 680, 751, 776
BstNI	CCWGG	1 cut(s)	605
BstPAI	GACNNNNGTC	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	87, 603
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	40
Bsu15I	ATCGAT	3 cut(s)	115, 240, 799
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	3 cut(s)	84, 665, 669
BsuTUI	ATCGAT	3 cut(s)	115, 240, 799
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	3 cut(s)	299, 478, 661
Cac8I	GCNNGC	3 cut(s)	436, 561, 667
CfoI	GCGC	2 cut(s)	495, 779
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	2 cut(s)	82, 476
ClaI	ATCGAT	3 cut(s)	115, 240, 799
CseI	GACGC	2 cut(s)	635, 799
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	5 cut(s)	229, 508, 644, 671, 680
CviJI	RGCY	9 cut(s)	11, 84, 135, 309, 438, 665, 669, 754, 765
CviKI_1	RGCY	9 cut(s)	11, 84, 135, 309, 438, 665, 669, 754, 765
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	3 cut(s)	122, 459, 747
DpnI	GATC	5 cut(s)	42, 71, 114, 239, 642
DpnII	GATC	5 cut(s)	40, 69, 112, 237, 640
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	2 cut(s)	432, 827
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	603
FaeI	CATG	5 cut(s)	232, 511, 647, 674, 683
FaqI	GGGAC	2 cut(s)	159, 638
FatI	CATG	5 cut(s)	228, 507, 643, 670, 679
FbaI	TGATCA	1 cut(s)	640
FokI	GGATG	1 cut(s)	740
FseI	GGCCGGCC	1 cut(s)	669
FspBI	CTAG	3 cut(s)	339, 522, 767
GlaI	GCGC	2 cut(s)	494, 778
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	3 cut(s)	84, 665, 669
HapII	CCGG	4 cut(s)	89, 193, 479, 666
HgaI	GACGC	2 cut(s)	635, 799
HhaI	GCGC	2 cut(s)	495, 779
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	5 cut(s)	232, 511, 647, 674, 683
Hin6I	GCGC	2 cut(s)	493, 777
HinP1I	GCGC	2 cut(s)	493, 777
HincII	GTYRAC	2 cut(s)	259, 469
HindII	GTYRAC	2 cut(s)	259, 469
HpaII	CCGG	4 cut(s)	89, 193, 479, 666
HphI	GGTGA	4 cut(s)	417, 493, 565, 693
Hpy166II	GTNNAC	2 cut(s)	259, 469
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	6 cut(s)	67, 193, 235, 339, 461, 575
Hpy8I	GTNNAC	2 cut(s)	259, 469
HpyAV	CCTTC	2 cut(s)	708, 824
HpyCH4III	ACNGT	3 cut(s)	150, 387, 473
HpyCH4IV	ACGT	4 cut(s)	127, 187, 443, 846
HpyCH4V	TGCA	6 cut(s)	157, 220, 297, 599, 674, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	671, 680, 751, 776
HpyF3I	CTNAG	3 cut(s)	122, 459, 747
HpySE526I	ACGT	4 cut(s)	127, 187, 443, 846
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	5 cut(s)	232, 511, 647, 674, 683
HspAI	GCGC	2 cut(s)	493, 777
Kpn2I	TCCGGA	1 cut(s)	192
KpnI	GGTACC	1 cut(s)	654
KroI	GCCGGC	1 cut(s)	665
KroNI	GCCGGC	1 cut(s)	667
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	40, 69, 112, 237, 640
LmnI	GCTCC	3 cut(s)	16, 443, 490
LweI	GCATC	4 cut(s)	107, 169, 207, 546
MaeI	CTAG	3 cut(s)	339, 522, 767
MaeII	ACGT	4 cut(s)	127, 187, 443, 846
MaeIII	GTNAC	2 cut(s)	389, 481
MalI	GATC	5 cut(s)	42, 71, 114, 239, 642
MboI	GATC	5 cut(s)	40, 69, 112, 237, 640
MboII	GAAGA	3 cut(s)	35, 620, 730
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	338, 460, 621
MluCI	AATT	3 cut(s)	173, 356, 421
MnlI	CCTC	8 cut(s)	72, 95, 131, 272, 354, 457, 652, 655
MroI	TCCGGA	1 cut(s)	192
MroNI	GCCGGC	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	2 cut(s)	252, 761
MslI	CAYNNNNRTG	2 cut(s)	446, 799
MspI	CCGG	4 cut(s)	89, 193, 479, 666
MspR9I	CCNGG	2 cut(s)	89, 605
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	4 cut(s)	671, 680, 751, 776
NaeI	GCCGGC	1 cut(s)	667
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	5 cut(s)	40, 69, 112, 237, 640
NgoMIV	GCCGGC	1 cut(s)	665
NlaIII	CATG	5 cut(s)	232, 511, 647, 674, 683
NlaIV	GGNNCC	4 cut(s)	12, 83, 439, 652
NmuCI	GTSAC	1 cut(s)	481
NspV	TTCGAA	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	693
PshAI	GACNNNNGTC	1 cut(s)	474
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	12, 83, 439, 652
PspPI	GGNCC	2 cut(s)	82, 476
PsuI	RGATCY	1 cut(s)	40
RigI	GGCCGGCC	1 cut(s)	669
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
RseI	CAYNNNNRTG	2 cut(s)	446, 799
SaqAI	TTAA	2 cut(s)	252, 761
Sau3AI	GATC	5 cut(s)	40, 69, 112, 237, 640
Sau96I	GGNCC	2 cut(s)	82, 476
ScrFI	CCNGG	2 cut(s)	89, 605
SduI	GDGCHC	3 cut(s)	338, 460, 621
SfaNI	GCATC	4 cut(s)	107, 169, 207, 546
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	446, 799
Sse9I	AATT	3 cut(s)	173, 356, 421
SspMI	CTAG	3 cut(s)	339, 522, 767
StyD4I	CCNGG	2 cut(s)	87, 603
TaaI	ACNGT	3 cut(s)	150, 387, 473
TaiI	ACGT	4 cut(s)	130, 190, 446, 849
TaqI	TCGA	6 cut(s)	115, 240, 264, 541, 593, 799
TasI	AATT	3 cut(s)	173, 356, 421
Tru1I	TTAA	2 cut(s)	252, 761
Tru9I	TTAA	2 cut(s)	252, 761
TscAI	CASTG	3 cut(s)	299, 478, 661
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	3 cut(s)	299, 478, 661
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	252
XagI	CCTNNNNNAGG	2 cut(s)	432, 827
XapI	RAATTY	2 cut(s)	173, 356
XbaI	TCTAGA	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	3 cut(s)	339, 522, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.