FvH4_3g27130

Serrate RNA effector

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010205
Physical Location & Seq
Forward (+)
20216168 .. 20226434
10267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27130.t2

Sequence Viewer

Length: 2232 bp
ATGGCCGAGATCATGAACATGCCGGTCGACTCCTTGGACCGCCGTCGTGACCGCAAAGACAAGTCCTCCGAAGAGCCTCCTCCTCCTCCTCAATCCTCCTCGCCGCAACAAGCACCACAACAGCAGCCGCCGCCTCCTCCGCCCTCGCGAAGACGCGACCGCGACGAAAAGGAGCGAGATAGGGACCTCGACCGCCCGCCTCGCCGCCCGGACTACTACGACCGGGGAAATCGTTCCCCTCCGCCTCCGCGGGAGAGAGATAGAGATAGGGATTACAAGCGGCGGGGCAGCGTTAGTCCACCACCTCCGTATAGAGACCGCGGCAGGCACTCGCCGCCTCGGAGGTCTCCGCCACCTCCGTTAAAGCGGTCCAGGAGGGAAGATGGAGGCTACGACGGCCGCAGAGGGAGTCCTAGAGGCGGCTTTGGACCTGGAGGTGACAGGAGGGAGATGGGGGTTAGACCTGGTTATGGTGATGACAGGCCTCATGGTCGTTATGCTGGACGCTCATCTGGTGGCTACGGGCCTTCTGACTGGGATTCAGGACGTGCTGGCTTTGGTGATGCTTCCAGCACTGGGACCACTCAAAGAGAAGGTTTGATGTCATACAAACAATTCATCCAAGAGCTGGAAGATGACATTTTGCCAGCTGAAGCTGAGCGCAGATATCAAGAGTACAAGGCAGAGTATATATCCACTCAGAAGCGAGCATATTTTAATGCTCATAAAGATGAGGAATGGCTAAAAGACAAATATCATCCCACAAACCTACTCACTGTAATTGAAAGGAGAAATGAAATATCACAGAAAACAGCGAAGGAATTTCTGCTTGAACTGCAAAGTGGATCCTTGGACTTAGGGCCTGGTGTCAATTCCTCAGCTCCAAATAAATCTGGACATACTAGTGAACCAAATTCTGATGATGAGGCTGATGTGGATGGCAAGAGAAGACGGCATGGCAGGGAACTGAATAAAGAAAATGATCTTATATCTACTGCTCCTAAGGCTCACCCAGTCAGTTCTGATCCTAGACGTATACAAGTTGACGTTGAACAAGCACAAGCCCTTGTCCGCAAACTTGACTCTGAAAAAGGAATTGTGGAGAACATCTTATGTGCACCTGAGAATGACAAAATGAACAGAGAAAAATCTCATGGTGGTTCCACTGGCCCTGTTGTTATCATACGGGGTTTGACATCTGTCAAGGGCCTTGAGGGTGTTGAGCTTCTTGACACCCTCATTACCTACCTTTGGCGCATACACGGTGTAGATTATTATGGGATGATTGAGTCAAATGATGCTAAAGGTCTCAGGCACGTGAGAGTAGAGGTGAAGGGTTCCGACATAGGTAATGGAGCTGAGTGGGAAAAGAAATTAGACTTGCATTGGCAAGAAAGATTGCACAGTCAAGATCCATTGGAAGTAATGACTGCCAAGGAAAAGATAGAAGCTGCTGCTTTACAAGGCCTGGATCCCTTTGTGCGGAAGATTAGGGATGAAAAATATGGCTGGAAGTATGGTTGTGGTGCCAAGGGTTGCACTAAGCTCTTTCATGCTGCTGAATTTGTGCACAAACATCTCAAGTTAAAACACCCCGAGCTACTGGTGGATGTGACTGTGAAAATGCGCGAGGATTTATATTTCCAGAATTACATGAATGATGCAGAGGCGCCCGGTGGAACTCCTGTTATGCAGCAATCAATACTGAGGGACAAGCCACAGAGACGTAGGCCAGGTATGGAGAATAGATTGAAAGACGAGCGTGGTAATCGGAGAGAACGAGAAAACCGAGCCAATGGTGGTGAGAGGTATGATAGGTCTGAGAATATGCAACAAGGTGAATTCCCATCCAACAATGACGGCCAAGATGGAGGAAATCATGATGAGCCAATGTATGATAATTTTGGTGGACAAGGAATGCATGGTGGTCCTCCTTTCCCATCAGATATAACCCCACCACCTGTGTTGATGCCTGTACCTGGTGCTGGTCCTCTTGGGCCTTTTGTTCCTGCTCCACCTGAAGTTGCAATGCAAATGTTGAGAGATCAAGGTGGTCCTCCACCCTTTGAAGGCAGTGGTAGAAACATGTGGCCCGGACCTCAAATGAGTGGGCCAGCCCCAATTCTTGCTTTGTCCCCAGCTTTCCGACAGGATCCTCGACGTTTAAGAAGTTACCAAGATCTAGATGCGCCTGAGGATGAAGTCACAGTGATAGACTACAGGAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005846 GO:0006139 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010445 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0048367 GO:0048509 GO:0048519 GO:0048731 GO:0048856 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1903311 GO:1903506 GO:2000011 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARS2 DUF3546

Protein Analysis

744

Amino Acids

83.83

Weight (kDa)

7.33

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERRATE_Ars2_N PF12066 215 - 296 3.7e-22 SERRATE/Ars2, N-terminal domain
ARS2 PF04959 452 - 659 1.4e-40 Arsenite-resistance protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1526, 1669
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 2 cut(s) 27, 1036
AccII CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
AclWI GGATC 8 cut(s) 840, 853, 1019, 1406, 1466, 1479, 2147, 2160
AcoI YGGCCR 3 cut(s) 3, 397, 1861
AcsI RAATTY 4 cut(s) 821, 913, 1562, 1841
AcuI CTGAAG 2 cut(s) 672, 2040
AcvI CACGTG 1 cut(s) 1318
AcyI GRCGYC 1 cut(s) 1670
AfaI GTAC 2 cut(s) 677, 1977
AfiI CCNNNNNNNGG 9 cut(s) 419, 470, 576, 628, 1251, 1482, 1979, 1985, 2069
AflIII ACRYGT 1 cut(s) 2085
AgsI TTSAA 5 cut(s) 785, 833, 1052, 1753, 2069
AhlI ACTAGT 1 cut(s) 902
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 7 cut(s) 371, 430, 463, 862, 1467, 1732, 1978
Alw21I GWGCWC 2 cut(s) 1120, 1572
Alw26I GTCTC 4 cut(s) 309, 351, 1313, 1717
Alw44I GTGCAC 2 cut(s) 1116, 1568
AlwI GGATC 8 cut(s) 840, 853, 1019, 1406, 1466, 1479, 2147, 2160
Ama87I CYCGRG 1 cut(s) 1595
ApaLI GTGCAC 2 cut(s) 1116, 1568
ApeKI GCWGC 6 cut(s) 124, 288, 1451, 1454, 1556, 1693
ApoI RAATTY 4 cut(s) 821, 913, 1562, 1841
Asp700I GAANNNNTTC 1 cut(s) 232
AspLEI GCGC 5 cut(s) 663, 1257, 1629, 1672, 2191
AsuC2I CCSGG 4 cut(s) 209, 224, 1674, 2094
AsuHPI GGTGA 7 cut(s) 449, 485, 572, 1001, 1342, 1814, 1850
AvaI CYCGRG 1 cut(s) 1595
AvaII GGWCC 9 cut(s) 37, 184, 369, 428, 579, 1928, 1988, 2054, 2096
AxyI CCTNAGG 2 cut(s) 1002, 2193
BaeGI GKGCMC 2 cut(s) 1120, 1572
BamHI GGATCC 3 cut(s) 845, 1471, 2152
BanI GGYRCC 2 cut(s) 1526, 1669
BbrPI CACGTG 1 cut(s) 1318
BbsI GAAGAC 2 cut(s) 157, 955
Bbv12I GWGCWC 2 cut(s) 1120, 1572
BbvCI CCTCAGC 1 cut(s) 877
BbvI GCAGC 6 cut(s) 136, 300, 1438, 1441, 1543, 1705
BccI CCATC 6 cut(s) 377, 445, 932, 1855, 1862, 1948
BceAI ACGGC 4 cut(s) 27, 412, 968, 1876
BciT130I CCWGG 7 cut(s) 373, 432, 465, 864, 1469, 1734, 1980
BcnI CCSGG 4 cut(s) 209, 224, 1674, 2094
BcoDI GTCTC 4 cut(s) 309, 351, 1313, 1717
BcuI ACTAGT 1 cut(s) 902
BfaI CTAG 4 cut(s) 414, 903, 1029, 2183
BfmI CTRYAG 1 cut(s) 2218
BfoI RGCGCY 1 cut(s) 1673
BglII AGATCT 1 cut(s) 2179
BlpI GCTNAGC 1 cut(s) 657
Bme18I GGWCC 9 cut(s) 37, 184, 369, 428, 579, 1928, 1988, 2054, 2096
BmeT110I CYCGRG 1 cut(s) 1595
BmgBI CACGTC 1 cut(s) 548
BmiI GGNNCC 9 cut(s) 185, 580, 847, 1162, 1339, 1473, 1528, 1671, 2154
BmrI ACTGGG 3 cut(s) 544, 585, 1007
BmsI GCATC 5 cut(s) 553, 1288, 1651, 1959, 2176
BmuI ACTGGG 3 cut(s) 544, 585, 1007
BoxI GACNNNNGTC 2 cut(s) 42, 1199
BpiI GAAGAC 2 cut(s) 157, 955
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 877
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 1232, 1565
BpuMI CCSGG 4 cut(s) 209, 224, 1674, 2094
BsaAI YACGTR 1 cut(s) 1318
BsaHI GRCGYC 1 cut(s) 1670
BsaI GGTCTC 3 cut(s) 309, 351, 1313
BsaJI CCNNGG 8 cut(s) 33, 223, 248, 319, 338, 849, 1434, 1530
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 9 cut(s) 419, 470, 576, 628, 1251, 1482, 1979, 1985, 2069
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 5 cut(s) 539, 580, 1013, 1171, 1608
Bse21I CCTNAGG 2 cut(s) 1002, 2193
Bse3DI GCAATG 1 cut(s) 2034
BseBI CCWGG 7 cut(s) 373, 432, 465, 864, 1469, 1734, 1980
BseDI CCNNGG 8 cut(s) 33, 223, 248, 319, 338, 849, 1434, 1530
BseGI GGATG 8 cut(s) 618, 757, 943, 1287, 1501, 1615, 1847, 2203
BseLI CCNNNNNNNGG 9 cut(s) 419, 470, 576, 628, 1251, 1482, 1979, 1985, 2069
BseMI GCAATG 1 cut(s) 2034
BseMII CTCAG 9 cut(s) 648, 713, 891, 1113, 1324, 1350, 1697, 1812, 2184
BseNI ACTGG 5 cut(s) 539, 580, 1013, 1171, 1608
BseRI GAGGAG 6 cut(s) 69, 72, 75, 78, 88, 126
BseSI GKGCMC 2 cut(s) 1120, 1572
BseX3I CGGCCG 1 cut(s) 397
BseXI GCAGC 6 cut(s) 136, 300, 1438, 1441, 1543, 1705
BseYI CCCAGC 1 cut(s) 2137
Bsh1236I CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
Bsh1285I CGRYCG 5 cut(s) 27, 160, 193, 223, 400
BshNI GGYRCC 2 cut(s) 1526, 1669
BsiEI CGRYCG 5 cut(s) 27, 160, 193, 223, 400
BsiHKAI GWGCWC 2 cut(s) 1120, 1572
BsiHKCI CYCGRG 1 cut(s) 1595
BsiSI CCGG 5 cut(s) 23, 209, 223, 1674, 2094
BslFI GGGAC 4 cut(s) 197, 592, 1724, 2119
BslI CCNNNNNNNGG 9 cut(s) 419, 470, 576, 628, 1251, 1482, 1979, 1985, 2069
BsmAI GTCTC 4 cut(s) 309, 351, 1313, 1717
BsmBI CGTCTC 1 cut(s) 1717
BsmFI GGGAC 4 cut(s) 197, 592, 1724, 2119
BsmI GAATGC 1 cut(s) 1923
Bso31I GGTCTC 3 cut(s) 309, 351, 1313
BsoBI CYCGRG 1 cut(s) 1595
Bsp1286I GDGCHC 2 cut(s) 1120, 1572
Bsp143I GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
Bsp1720I GCTNAGC 1 cut(s) 657
Bsp68I TCGCGA 1 cut(s) 148
BspCNI CTCAG 9 cut(s) 649, 712, 890, 1114, 1323, 1351, 1698, 1813, 2185
BspFNI CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
BspHI TCATGA 2 cut(s) 12, 1879
BspLI GGNNCC 9 cut(s) 185, 580, 847, 1162, 1339, 1473, 1528, 1671, 2154
BspPI GGATC 8 cut(s) 840, 853, 1019, 1406, 1466, 1479, 2147, 2160
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 2 cut(s) 1526, 1669
BspTNI GGTCTC 3 cut(s) 309, 351, 1313
BsrDI GCAATG 1 cut(s) 2034
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 5 cut(s) 539, 580, 1013, 1171, 1608
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 8 cut(s) 33, 223, 248, 319, 338, 849, 1434, 1530
BssMI GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
BssNAI GTATAC 1 cut(s) 1037
BssNI GRCGYC 1 cut(s) 1670
BssT1I CCWWGG 4 cut(s) 33, 849, 1434, 1530
Bst1107I GTATAC 1 cut(s) 1037
Bst2UI CCWGG 7 cut(s) 373, 432, 465, 864, 1469, 1734, 1980
Bst4CI ACNGT 5 cut(s) 778, 1265, 1406, 1618, 2209
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 1670
BstBAI YACGTR 1 cut(s) 1318
BstC8I GCNNGC 6 cut(s) 197, 326, 553, 648, 708, 2115
BstDSI CCRYGG 2 cut(s) 248, 319
BstF5I GGATG 8 cut(s) 618, 757, 943, 1287, 1501, 1615, 1847, 2203
BstFNI CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
BstH2I RGCGCY 1 cut(s) 1673
BstHHI GCGC 5 cut(s) 663, 1257, 1629, 1672, 2191
BstKTI GATC 9 cut(s) 12, 848, 985, 1027, 1414, 1474, 2047, 2155, 2182
BstMAI GTCTC 4 cut(s) 309, 351, 1313, 1717
BstMBI GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
BstMCI CGRYCG 5 cut(s) 27, 160, 193, 223, 400
BstMWI GCNNNNNNNGC 7 cut(s) 130, 139, 201, 334, 396, 835, 1004
BstNI CCWGG 7 cut(s) 373, 432, 465, 864, 1469, 1734, 1980
BstNSI RCATGY 2 cut(s) 22, 2089
BstPAI GACNNNNGTC 2 cut(s) 42, 1199
BstSFI CTRYAG 1 cut(s) 2218
BstSLI GKGCMC 2 cut(s) 1120, 1572
BstUI CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
BstV1I GCAGC 6 cut(s) 136, 300, 1438, 1441, 1543, 1705
BstV2I GAAGAC 2 cut(s) 157, 955
BstX2I RGATCY 5 cut(s) 845, 1411, 1471, 2152, 2179
BstYI RGATCY 5 cut(s) 845, 1411, 1471, 2152, 2179
BstZ17I GTATAC 1 cut(s) 1037
BstZI CGGCCG 1 cut(s) 397
Bsu36I CCTNAGG 2 cut(s) 1002, 2193
BtgI CCRYGG 2 cut(s) 248, 319
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 8 cut(s) 618, 757, 943, 1287, 1501, 1615, 1847, 2203
BtsI GCAGTG 1 cut(s) 2080
BtsIMutI CAGTG 5 cut(s) 573, 774, 1164, 2080, 2214
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 6 cut(s) 197, 326, 553, 648, 708, 2115
CciI TCATGA 2 cut(s) 12, 1879
CfoI GCGC 5 cut(s) 663, 1257, 1629, 1672, 2191
Cfr10I RCCGGY 1 cut(s) 22
Cfr42I CCGCGG 2 cut(s) 251, 322
CseI GACGC 2 cut(s) 162, 513
CsiI ACCWGGT 2 cut(s) 463, 1978
Csp6I GTAC 2 cut(s) 676, 1976
CspCI CAANNNNNGTGG 2 cut(s) 1947, 1982
CviQI GTAC 2 cut(s) 676, 1976
DinI GGCGCC 1 cut(s) 1671
DpnI GATC 9 cut(s) 11, 847, 984, 1026, 1413, 1473, 2046, 2154, 2181
DpnII GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
EaeI YGGCCR 3 cut(s) 3, 397, 1861
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 3 cut(s) 129, 231, 339
EclXI CGGCCG 1 cut(s) 397
Eco130I CCWWGG 4 cut(s) 33, 849, 1434, 1530
Eco147I AGGCCT 2 cut(s) 484, 1467
Eco31I GGTCTC 3 cut(s) 309, 351, 1313
Eco32I GATATC 1 cut(s) 668
Eco47I GGWCC 9 cut(s) 37, 184, 369, 428, 579, 1928, 1988, 2054, 2096
Eco52I CGGCCG 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 672, 2040
Eco72I CACGTG 1 cut(s) 1318
Eco81I CCTNAGG 2 cut(s) 1002, 2193
Eco88I CYCGRG 1 cut(s) 1595
EcoO109I RGGNCCY 3 cut(s) 184, 860, 1207
EcoRI GAATTC 1 cut(s) 1841
EcoRII CCWGG 7 cut(s) 371, 430, 463, 862, 1467, 1732, 1978
EcoRV GATATC 1 cut(s) 668
EcoT14I CCWWGG 4 cut(s) 33, 849, 1434, 1530
EcoT22I ATGCAT 1 cut(s) 1923
EgeI GGCGCC 1 cut(s) 1671
EheI GGCGCC 1 cut(s) 1671
ErhI CCWWGG 4 cut(s) 33, 849, 1434, 1530
Esp3I CGTCTC 1 cut(s) 1717
FaqI GGGAC 4 cut(s) 197, 592, 1724, 2119
FauI CCCGC 3 cut(s) 204, 243, 276
FblI GTMKAC 2 cut(s) 27, 1036
FokI GGATG 8 cut(s) 605, 744, 950, 1294, 1508, 1622, 1834, 2210
FspBI CTAG 4 cut(s) 414, 903, 1029, 2183
GlaI GCGC 5 cut(s) 662, 1256, 1628, 1671, 2190
GsaI CCCAGC 1 cut(s) 2141
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 1673
HapII CCGG 5 cut(s) 23, 209, 223, 1674, 2094
HgaI GACGC 2 cut(s) 162, 513
HhaI GCGC 5 cut(s) 663, 1257, 1629, 1672, 2191
Hin1I GRCGYC 1 cut(s) 1670
Hin6I GCGC 5 cut(s) 661, 1255, 1627, 1670, 2189
HinP1I GCGC 5 cut(s) 661, 1255, 1627, 1670, 2189
HincII GTYRAC 2 cut(s) 28, 1045
HindII GTYRAC 2 cut(s) 28, 1045
HinfI GANTC 5 cut(s) 29, 409, 539, 1082, 1289
HpaII CCGG 5 cut(s) 23, 209, 223, 1674, 2094
HphI GGTGA 7 cut(s) 449, 485, 572, 1001, 1342, 1814, 1850
Hpy166II GTNNAC 8 cut(s) 28, 299, 908, 1037, 1045, 1118, 1570, 1910
Hpy8I GTNNAC 8 cut(s) 28, 299, 908, 1037, 1045, 1118, 1570, 1910
Hpy99I CGWCG 4 cut(s) 48, 167, 398, 2163
HpyAV CCTTC 5 cut(s) 537, 587, 811, 1327, 2063
HpyCH4III ACNGT 5 cut(s) 778, 1265, 1406, 1618, 2209
HpyCH4IV ACGT 6 cut(s) 547, 1033, 1047, 1317, 1726, 2161
HpyF10VI GCNNNNNNNGC 7 cut(s) 130, 139, 201, 334, 396, 835, 1004
HpySE526I ACGT 6 cut(s) 547, 1033, 1047, 1317, 1726, 2161
Hsp92I GRCGYC 1 cut(s) 1670
HspAI GCGC 5 cut(s) 661, 1255, 1627, 1670, 2189
KasI GGCGCC 1 cut(s) 1669
KspI CCGCGG 2 cut(s) 251, 322
Kzo9I GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 6 cut(s) 172, 886, 1003, 1355, 2017, 2223
Lsp1109I GCAGC 6 cut(s) 136, 300, 1438, 1441, 1543, 1705
LweI GCATC 5 cut(s) 553, 1288, 1651, 1959, 2176
MabI ACCWGGT 2 cut(s) 463, 1978
MaeI CTAG 4 cut(s) 414, 903, 1029, 2183
MaeII ACGT 6 cut(s) 547, 1033, 1047, 1317, 1726, 2161
MaeIII GTNAC 5 cut(s) 47, 437, 1612, 2171, 2203
MalI GATC 9 cut(s) 11, 847, 984, 1026, 1413, 1473, 2046, 2154, 2181
MboI GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
MboII GAAGA 6 cut(s) 83, 162, 392, 644, 960, 1498
MflI RGATCY 5 cut(s) 845, 1411, 1471, 2152, 2179
MhlI GDGCHC 2 cut(s) 1120, 1572
Mly113I GGCGCC 1 cut(s) 1670
MlyI GAGTC 4 cut(s) 23, 418, 1076, 1298
MmeI TCCRAC 3 cut(s) 1365, 1875, 2170
Mph1103I ATGCAT 1 cut(s) 1923
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 4 cut(s) 362, 717, 1586, 2165
MslI CAYNNNNRTG 3 cut(s) 17, 729, 903
MspA1I CMGCKG 3 cut(s) 250, 321, 650
MspI CCGG 5 cut(s) 23, 209, 223, 1674, 2094
Mva1269I GAATGC 1 cut(s) 1923
MvaI CCWGG 7 cut(s) 373, 432, 465, 864, 1469, 1734, 1980
MvnI CGCG 6 cut(s) 148, 156, 162, 250, 321, 1629
MwoI GCNNNNNNNGC 7 cut(s) 130, 139, 201, 334, 396, 835, 1004
NarI GGCGCC 1 cut(s) 1670
NciI CCSGG 4 cut(s) 209, 224, 1674, 2094
NdeII GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
NlaIV GGNNCC 9 cut(s) 185, 580, 847, 1162, 1339, 1473, 1528, 1671, 2154
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 4 cut(s) 47, 437, 1612, 2203
NruI TCGCGA 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 1923
NspI RCATGY 2 cut(s) 22, 2089
PagI TCATGA 2 cut(s) 12, 1879
PceI AGGCCT 2 cut(s) 484, 1467
PciI ACATGT 1 cut(s) 2085
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 2 cut(s) 1777, 1786
PctI GAATGC 1 cut(s) 1923
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 628
PfoI TCCNGGA 1 cut(s) 371
PleI GAGTC 4 cut(s) 23, 417, 1076, 1297
PluTI GGCGCC 1 cut(s) 1673
PmaCI CACGTG 1 cut(s) 1318
PmlI CACGTG 1 cut(s) 1318
PpsI GAGTC 4 cut(s) 23, 417, 1076, 1297
Ppu21I YACGTR 1 cut(s) 1318
PpuMI RGGWCCY 1 cut(s) 184
PscI ACATGT 1 cut(s) 2085
PshAI GACNNNNGTC 2 cut(s) 42, 1199
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 7 cut(s) 371, 430, 463, 862, 1467, 1732, 1978
PspCI CACGTG 1 cut(s) 1318
PspFI CCCAGC 1 cut(s) 2137
PspGI CCWGG 7 cut(s) 371, 430, 463, 862, 1467, 1732, 1978
PspN4I GGNNCC 9 cut(s) 185, 580, 847, 1162, 1339, 1473, 1528, 1671, 2154
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 5 cut(s) 845, 1411, 1471, 2152, 2179
PvuII CAGCTG 1 cut(s) 650
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 2 cut(s) 677, 1977
RsaNI GTAC 2 cut(s) 676, 1976
RseI CAYNNNNRTG 3 cut(s) 17, 729, 903
SacII CCGCGG 2 cut(s) 251, 322
SalI GTCGAC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 362, 717, 1586, 2165
Sau3AI GATC 9 cut(s) 9, 845, 982, 1024, 1411, 1471, 2044, 2152, 2179
SchI GAGTC 4 cut(s) 23, 418, 1076, 1298
SduI GDGCHC 2 cut(s) 1120, 1572
SexAI ACCWGGT 2 cut(s) 463, 1978
SfaNI GCATC 5 cut(s) 553, 1288, 1651, 1959, 2176
SfcI CTRYAG 1 cut(s) 2218
SfoI GGCGCC 1 cut(s) 1671
Sfr303I CCGCGG 2 cut(s) 251, 322
SgrBI CCGCGG 2 cut(s) 251, 322
SinI GGWCC 9 cut(s) 37, 184, 369, 428, 579, 1928, 1988, 2054, 2096
SmiMI CAYNNNNRTG 3 cut(s) 17, 729, 903
SmlI CTYRAG 2 cut(s) 1211, 1580
SmoI CTYRAG 2 cut(s) 1211, 1580
SpeI ACTAGT 1 cut(s) 902
SseBI AGGCCT 2 cut(s) 484, 1467
SspDI GGCGCC 1 cut(s) 1669
SspMI CTAG 4 cut(s) 414, 903, 1029, 2183
StuI AGGCCT 2 cut(s) 484, 1467
StyI CCWWGG 4 cut(s) 33, 849, 1434, 1530
TaaI ACNGT 5 cut(s) 778, 1265, 1406, 1618, 2209
TaiI ACGT 6 cut(s) 550, 1036, 1050, 1320, 1729, 2164
TaqI TCGA 3 cut(s) 27, 189, 2158
TatI WGTACW 1 cut(s) 675
TauI GCSGC 9 cut(s) 106, 130, 133, 207, 283, 324, 337, 402, 423
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 4 cut(s) 362, 717, 1586, 2165
Tru9I TTAA 4 cut(s) 362, 717, 1586, 2165
TscAI CASTG 5 cut(s) 580, 781, 1171, 2080, 2214
TseFI GTSAC 4 cut(s) 47, 437, 1612, 2203
TseI GCWGC 6 cut(s) 124, 288, 1451, 1454, 1556, 1693
Tsp45I GTSAC 4 cut(s) 47, 437, 1612, 2203
TspDTI ATGAA 8 cut(s) 29, 607, 810, 1151, 1512, 1541, 1670, 2214
TspGWI ACGGA 2 cut(s) 297, 348
TspRI CASTG 5 cut(s) 580, 781, 1171, 2080, 2214
Van91I CCANNNNNTGG 1 cut(s) 628
VneI GTGCAC 2 cut(s) 1116, 1568
VpaK11BI GGWCC 9 cut(s) 37, 184, 369, 428, 579, 1928, 1988, 2054, 2096
XapI RAATTY 4 cut(s) 821, 913, 1562, 1841
XbaI TCTAGA 1 cut(s) 2182
XceI RCATGY 2 cut(s) 22, 2089
XmiI GTMKAC 2 cut(s) 27, 1036
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 4 cut(s) 414, 903, 1029, 2183
Zsp2I ATGCAT 1 cut(s) 1923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.