MD11G1180900.v1.1

Serrate RNA effector

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010205
Physical Location & Seq
Forward (+)
22184071 .. 22192798
8728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1180900.v1.1.491

Sequence Viewer

Length: 2253 bp
ATGGCCGAGATCATGAACATGCCCGTCGACTCCTTGGACCGTCGTTCTGATCGCAAAGAGAAGTCCTCCGAAGATCCCCAATCCCCGCCGCAAGAGGCACCAGCTCCGCCTCAGCCTGCCGCACCCTCGCGAAGGCGCGACAGAGACGAAAGGGACAGAGGCAGAGACGATAGGGACCTCGACCGCCCTCCCAGTCGCCGCCCCGATTACTACGATCGAAATCGCTCCCCTCCGCCTCCTGCTATTCGAGAGAGGGATAGAGATAGAGAGAGGGACTATAAGCGCCGGGGCAGCCTCAGTCCTCCACTCAGGGACCGCAGGCACTCTCCGCCACGGAGGTCTCCTCCACCTCCGTTCAAGCGGTCTAGGAGGGAAGATGGAGGGTATGATGGCAGGAGAGGGAGTCCCAGAGGAGGGTTTGGACCTGGGGATAGGAGGTTGGGATATGATTATCCAGGTGGATACGATCGTGAGATGGGGGGTAGACCTGGTTATGGTGACGAAAGACCTCATGGTCGGTATGTTGGACACCCATCTGGCGGCTATGGTCCTGGTGACTGGGATTCAGGAAGGGGTGGTTTTGGTGATGCTTCCAGCACTGGGACTACTCAAAGAGAAGGGTTGATGTCATACAAACAATTTATTCAGGAGCTTGAAGATGACATTCTTCCATCCGAAGCTGAGCGCAGATATCAAGAATACAAGACAGAATATGTGTCCACCCAGAAGCGAGCCTATTTTAATGCTCATAAAGATGAGGACTGGCTGAAAGACAAATATCATCCCACAAATCTGCTCACTGTTATCGAAAGGAGGAACGAACTTGCACGAAAAGTAGCAAAAGATTTTCTGCTTGATCTACAGAGTGGGACCTTGGACTTAGGCCCAGGTGTCAATTCCGCAGCTTCAAATAAACCAGGACACAATAGTGAACCAAATTCTGAAGATGAAACTGACGTGGGTGGCAAGCGGAGACGGCCTGGCAGGGAACCAAATAAAGAAAATGTTCTTCTTTCAGCTGCTCCTAAGGCTCACCCAGTCAGTTCTGAGCCTAGACGTATACAAGTAGACATTGAACAAGCGCAGGCCCTTGTTCGCAAACTTGACTCTGAAAAAGGAATTGTGGAAAACATTTTATATGGACCTGATAATGACAAAAATAGAGAAAAATTGCACGGTGGCTCCACTGGCCCTGTTATTATAATACGGGGTTTGACATCTGTAAAGGGCTTGGAGGGCATTGAGCTACTAGATACTCTTATTACTTATCTCTGGCGCATCCATGGTTTAGATTATTATGGAATGAGTGAATCAAACGAAGCTAAGGGTCTACGGCATGTGAGAGCAGAGGGGAAGAGTTCCAATCTGACCAGTAATGGAAATGAGTGGGAAGAGAAATTAGACTTGCGTTGGCAAGAAAGGTTGCAGAGTCAAGATCCCTTGGAAATAATGACTGCTAAGGAAAAGATAGATACTACTGCTTCTGAATCCTTGGATCCCTATGTTCGGAAGATCAGGGATGAAAAGTATGGCTGGAAGTATGGTTGTGGAGCCAAGGGTTGCACAAAGCTCTTTCATGCTGCTGAGTTTGTGCACAAACATCTTAAATTGAAACACCCTGAACTTGTGATGGAGGTGACTTCCAAACTGCGCGAGGAGCTGTATTTCCAGAATTATATGAATGATGTGGATGCACCTGGTGGAACTCCTATTATGCAGCAATCTGTACTGAGGGACAAACCACAGAGGCGCAGGCCTGTAGAGAATAGATTGAAAGATGAACGTGGTAACCGTAGAGAACGAGACAATCGGGTCAATGGTGGTGAGAGATTTGATAGGTCTGAGAACATGCAATCAAGTGAATTCCAGCCCAATAATGATGGTCCAGATGGAGGGAATCCTGATGAACCGATGTTTGATAATTTTGGTGGGCAAGGAATGCGTGTTGGTCCTCCTTTCCCATCGGATATACCGCCACCACCTGTATTGATGCCTGTGCCTGGTGCTGGTCCGTTAGGACCTTTTGTTCCTGCTCCCCCTGAAGTTGCAATGCAAATGTTGCGAGATCAAGGTGGTCCTCCACCTTTTGAAGGTAGTGGTAGAAATGTGTGGTCTGGACCCCAAATGAGTGGGCCATCCCCAATTCTTGCTTTATCTCCAGCTTTTCGACAGGATCCTCGACGTTTAAGAAGTTATCAAGATCTAGATGCCCCAGAAGATGAAGTGACAGTGATAGACTACAGGAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005846 GO:0006139 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010445 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0048367 GO:0048509 GO:0048519 GO:0048731 GO:0048856 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1903311 GO:1903506 GO:2000011 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARS2 DUF3546

Protein Analysis

751

Amino Acids

84.81

Weight (kDa)

6.97

Isoelectric Point (pI)

72.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SERRATE_Ars2_N PF12066 212 - 293 2.4e-22 SERRATE/Ars2, N-terminal domain
ARS2 PF04959 448 - 655 3.7e-43 Arsenite-resistance protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1202
AasI GACNNNNNNGTC 2 cut(s) 513, 1811
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 5 cut(s) 27, 484, 1060, 1068, 1330
AccII CGCG 3 cut(s) 130, 138, 1653
AclWI GGATC 6 cut(s) 68, 1430, 1490, 1503, 2168, 2181
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 937, 1862
AcuI CTGAAG 2 cut(s) 963, 2061
AdeI CACNNNGTG 1 cut(s) 1700
AfaI GTAC 1 cut(s) 1728
AgsI TTSAA 7 cut(s) 358, 656, 909, 1076, 1612, 1774, 2090
AjiI CACGTC 1 cut(s) 958
AjnI CCWGG 9 cut(s) 424, 454, 487, 550, 886, 916, 979, 1696, 1999
AleI CACNNNNGTG 1 cut(s) 927
AloI GAACNNNNNNTCC 2 cut(s) 2010, 2042
Alw21I GWGCWC 1 cut(s) 1596
Alw26I GTCTC 5 cut(s) 138, 159, 345, 967, 1797
Alw44I GTGCAC 1 cut(s) 1592
AlwI GGATC 6 cut(s) 68, 1430, 1490, 1503, 2168, 2181
AoxI GGCC 7 cut(s) 3, 883, 977, 1086, 1189, 1754, 2132
ApaLI GTGCAC 1 cut(s) 1592
ApeKI GCWGC 5 cut(s) 291, 902, 1019, 1580, 1717
ApoI RAATTY 2 cut(s) 937, 1862
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 7 cut(s) 138, 285, 687, 1084, 1278, 1653, 1752
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 6 cut(s) 509, 566, 596, 1025, 1648, 1835
AxyI CCTNAGG 1 cut(s) 1026
BaeGI GKGCMC 1 cut(s) 1596
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BamHI GGATCC 2 cut(s) 1495, 2173
BanI GGYRCC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 1596
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 5 cut(s) 303, 914, 1006, 1567, 1729
BceAI ACGGC 2 cut(s) 992, 1349
BciT130I CCWGG 9 cut(s) 426, 456, 489, 552, 888, 918, 981, 1698, 2001
BciVI GTATCC 1 cut(s) 455
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 5 cut(s) 138, 159, 345, 967, 1797
BfaI CTAG 4 cut(s) 366, 1053, 1250, 2204
BfmI CTRYAG 3 cut(s) 860, 1758, 2239
BfoI RGCGCY 1 cut(s) 286
BfuI GTATCC 1 cut(s) 455
BglII AGATCT 1 cut(s) 2200
BisI GCNGC 9 cut(s) 89, 120, 199, 292, 541, 903, 1020, 1581, 1718
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 9 cut(s) 90, 121, 200, 293, 542, 904, 1021, 1582, 1719
BmgBI CACGTC 1 cut(s) 958
BmrI ACTGGG 4 cut(s) 186, 568, 609, 1031
BmsI GCATC 5 cut(s) 577, 1287, 1681, 1980, 2197
BmuI ACTGGG 4 cut(s) 186, 568, 609, 1031
BplI GAGNNNNNCTC 4 cut(s) 50, 82, 328, 360
BpmI CTGGAG 1 cut(s) 2142
Bpu10I CCTNAGC 3 cut(s) 111, 1323, 1458
Bpu1102I GCTNAGC 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 345
BsaXI ACNNNNNCTCC 4 cut(s) 388, 418, 1166, 1196
Bse1I ACTGG 7 cut(s) 192, 563, 604, 767, 1037, 1192, 1371
Bse21I CCTNAGG 1 cut(s) 1026
Bse3DI GCAATG 1 cut(s) 2055
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 9 cut(s) 426, 456, 489, 552, 888, 918, 981, 1698, 2001
BseGI GGATG 6 cut(s) 671, 781, 1278, 1525, 1696, 2135
BseJI GATNNNNATC 1 cut(s) 219
BseMI GCAATG 1 cut(s) 2055
BseMII CTCAG 8 cut(s) 125, 310, 322, 672, 1038, 1575, 1721, 1833
BseNI ACTGG 7 cut(s) 192, 563, 604, 767, 1037, 1192, 1371
BseRI GAGGAG 3 cut(s) 333, 426, 1670
BseSI GKGCMC 1 cut(s) 1596
BseXI GCAGC 5 cut(s) 303, 914, 1006, 1567, 1729
Bsh1236I CGCG 3 cut(s) 130, 138, 1653
Bsh1285I CGRYCG 3 cut(s) 184, 217, 469
BshFI GGCC 7 cut(s) 5, 885, 979, 1088, 1191, 1756, 2134
BshNI GGYRCC 1 cut(s) 97
BsiEI CGRYCG 3 cut(s) 184, 217, 469
BsiHKAI GWGCWC 1 cut(s) 1596
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 8 cut(s) 167, 188, 287, 326, 390, 616, 883, 1748
BsmAI GTCTC 5 cut(s) 138, 159, 345, 967, 1797
BsmBI CGTCTC 3 cut(s) 138, 159, 967
BsmFI GGGAC 8 cut(s) 167, 188, 287, 326, 390, 616, 883, 1748
BsmI GAATGC 1 cut(s) 1944
BsnI GGCC 7 cut(s) 5, 885, 979, 1088, 1191, 1756, 2134
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 1596
Bsp1720I GCTNAGC 1 cut(s) 681
Bsp19I CCATGG 1 cut(s) 1282
Bsp68I TCGCGA 1 cut(s) 130
BspANI GGCC 7 cut(s) 5, 885, 979, 1088, 1191, 1756, 2134
BspCNI CTCAG 8 cut(s) 124, 309, 321, 673, 1039, 1576, 1722, 1834
BspFNI CGCG 3 cut(s) 130, 138, 1653
BspHI TCATGA 1 cut(s) 12
BspPI GGATC 6 cut(s) 68, 1430, 1490, 1503, 2168, 2181
BspT107I GGYRCC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 2055
BsrI ACTGG 7 cut(s) 192, 563, 604, 767, 1037, 1192, 1371
BssNAI GTATAC 1 cut(s) 1061
BssT1I CCWWGG 6 cut(s) 33, 873, 1282, 1440, 1491, 1554
Bst1107I GTATAC 1 cut(s) 1061
Bst2UI CCWGG 9 cut(s) 426, 456, 489, 552, 888, 918, 981, 1698, 2001
Bst4CI ACNGT 5 cut(s) 41, 802, 1178, 1793, 2230
Bst6I CTCTTC 2 cut(s) 1349, 1386
BstAPI GCANNNNNTGC 2 cut(s) 1939, 2059
BstC8I GCNNGC 6 cut(s) 117, 320, 732, 968, 1086, 1754
BstDSI CCRYGG 2 cut(s) 332, 1282
BstEII GGTNACC 1 cut(s) 1787
BstENI CCTNNNNNAGG 2 cut(s) 130, 2088
BstF5I GGATG 6 cut(s) 671, 781, 1278, 1525, 1696, 2135
BstFNI CGCG 3 cut(s) 130, 138, 1653
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 7 cut(s) 138, 285, 687, 1084, 1278, 1653, 1752
BstMAI GTCTC 5 cut(s) 138, 159, 345, 967, 1797
BstMCI CGRYCG 3 cut(s) 184, 217, 469
BstMWI GCNNNNNNNGC 9 cut(s) 291, 328, 976, 1028, 1188, 1236, 1657, 1939, 2059
BstNI CCWGG 9 cut(s) 426, 456, 489, 552, 888, 918, 981, 1698, 2001
BstNSI RCATGY 3 cut(s) 22, 1340, 1852
BstPI GGTNACC 1 cut(s) 1787
BstSFI CTRYAG 3 cut(s) 860, 1758, 2239
BstSLI GKGCMC 1 cut(s) 1596
BstUI CGCG 3 cut(s) 130, 138, 1653
BstV1I GCAGC 5 cut(s) 303, 914, 1006, 1567, 1729
BstX2I RGATCY 5 cut(s) 73, 1435, 1495, 2173, 2200
BstXI CCANNNNNNTGG 1 cut(s) 2129
BstYI RGATCY 5 cut(s) 73, 1435, 1495, 2173, 2200
BstZ17I GTATAC 1 cut(s) 1061
Bsu36I CCTNAGG 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 7 cut(s) 5, 885, 979, 1088, 1191, 1756, 2134
BtgI CCRYGG 2 cut(s) 332, 1282
BtrI CACGTC 1 cut(s) 958
BtsCI GGATG 6 cut(s) 671, 781, 1278, 1525, 1696, 2135
BtsIMutI CAGTG 4 cut(s) 597, 798, 1185, 2235
BtuMI TCGCGA 1 cut(s) 130
Cac8I GCNNGC 6 cut(s) 117, 320, 732, 968, 1086, 1754
CciI TCATGA 1 cut(s) 12
CfoI GCGC 7 cut(s) 138, 285, 687, 1084, 1278, 1653, 1752
CsiI ACCWGGT 2 cut(s) 487, 1696
Csp6I GTAC 1 cut(s) 1727
CspCI CAANNNNNGTGG 2 cut(s) 1968, 2003
CviAII CATG 7 cut(s) 13, 19, 512, 1283, 1337, 1577, 1849
CviQI GTAC 1 cut(s) 1727
DraIII CACNNNGTG 1 cut(s) 1700
DrdI GACNNNNNNGTC 2 cut(s) 513, 1811
DseDI GACNNNNNNGTC 2 cut(s) 513, 1811
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1349, 1386
EarI CTCTTC 2 cut(s) 1349, 1386
EciI GGCGGA 3 cut(s) 96, 222, 318
Eco130I CCWWGG 6 cut(s) 33, 873, 1282, 1440, 1491, 1554
Eco147I AGGCCT 1 cut(s) 1756
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 692
Eco57I CTGAAG 2 cut(s) 963, 2061
Eco81I CCTNAGG 1 cut(s) 1026
Eco91I GGTNACC 1 cut(s) 1787
EcoNI CCTNNNNNAGG 2 cut(s) 130, 2088
EcoO109I RGGNCCY 4 cut(s) 175, 870, 1087, 2018
EcoO65I GGTNACC 1 cut(s) 1787
EcoRI GAATTC 1 cut(s) 1862
EcoRII CCWGG 9 cut(s) 424, 454, 487, 550, 886, 916, 979, 1696, 1999
EcoRV GATATC 1 cut(s) 692
EcoT14I CCWWGG 6 cut(s) 33, 873, 1282, 1440, 1491, 1554
ErhI CCWWGG 6 cut(s) 33, 873, 1282, 1440, 1491, 1554
Esp3I CGTCTC 3 cut(s) 138, 159, 967
FaeI CATG 7 cut(s) 16, 22, 515, 1286, 1340, 1580, 1852
FaqI GGGAC 8 cut(s) 167, 188, 287, 326, 390, 616, 883, 1748
FatI CATG 7 cut(s) 12, 18, 511, 1282, 1336, 1576, 1848
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 5 cut(s) 27, 484, 1060, 1068, 1330
Fnu4HI GCNGC 9 cut(s) 89, 120, 199, 292, 541, 903, 1020, 1581, 1718
FokI GGATG 6 cut(s) 658, 768, 1265, 1532, 1703, 2122
Fsp4HI GCNGC 9 cut(s) 89, 120, 199, 292, 541, 903, 1020, 1581, 1718
FspBI CTAG 4 cut(s) 366, 1053, 1250, 2204
GlaI GCGC 7 cut(s) 137, 284, 686, 1083, 1277, 1652, 1751
GluI GCNGC 9 cut(s) 89, 120, 199, 292, 541, 903, 1020, 1581, 1718
GsuI CTGGAG 1 cut(s) 2142
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 7 cut(s) 5, 885, 979, 1088, 1191, 1756, 2134
HapII CCGG 1 cut(s) 286
HhaI GCGC 7 cut(s) 138, 285, 687, 1084, 1278, 1653, 1752
Hin1II CATG 7 cut(s) 16, 22, 515, 1286, 1340, 1580, 1852
Hin6I GCGC 7 cut(s) 136, 283, 685, 1082, 1276, 1651, 1750
HinP1I GCGC 7 cut(s) 136, 283, 685, 1082, 1276, 1651, 1750
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 8 cut(s) 29, 403, 563, 1106, 1310, 1429, 1487, 1897
HpaII CCGG 1 cut(s) 286
HphI GGTGA 6 cut(s) 509, 566, 596, 1025, 1648, 1835
Hpy166II GTNNAC 8 cut(s) 28, 485, 720, 932, 1061, 1069, 1331, 1594
Hpy8I GTNNAC 8 cut(s) 28, 485, 720, 932, 1061, 1069, 1331, 1594
Hpy99I CGWCG 3 cut(s) 29, 45, 2184
HpyAV CCTTC 4 cut(s) 126, 564, 611, 2084
HpyCH4III ACNGT 5 cut(s) 41, 802, 1178, 1793, 2230
HpyCH4IV ACGT 4 cut(s) 957, 1057, 1783, 2182
HpyF10VI GCNNNNNNNGC 9 cut(s) 291, 328, 976, 1028, 1188, 1236, 1657, 1939, 2059
HpySE526I ACGT 4 cut(s) 957, 1057, 1783, 2182
Hsp92II CATG 7 cut(s) 16, 22, 515, 1286, 1340, 1580, 1852
HspAI GCGC 7 cut(s) 136, 283, 685, 1082, 1276, 1651, 1750
LmnI GCTCC 9 cut(s) 109, 230, 649, 1027, 1187, 1550, 1657, 2038, 2244
Lsp1109I GCAGC 5 cut(s) 303, 914, 1006, 1567, 1729
LweI GCATC 5 cut(s) 577, 1287, 1681, 1980, 2197
MabI ACCWGGT 2 cut(s) 487, 1696
MaeI CTAG 4 cut(s) 366, 1053, 1250, 2204
MaeII ACGT 4 cut(s) 957, 1057, 1783, 2182
MaeIII GTNAC 5 cut(s) 497, 554, 1636, 1787, 2224
MflI RGATCY 5 cut(s) 73, 1435, 1495, 2173, 2200
MhlI GDGCHC 1 cut(s) 1596
MlyI GAGTC 4 cut(s) 23, 412, 1100, 1438
MmeI TCCRAC 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 3 cut(s) 741, 1605, 2186
MslI CAYNNNNRTG 3 cut(s) 17, 753, 927
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 1944
MvaI CCWGG 9 cut(s) 426, 456, 489, 552, 888, 918, 981, 1698, 2001
MvnI CGCG 3 cut(s) 130, 138, 1653
MwoI GCNNNNNNNGC 9 cut(s) 291, 328, 976, 1028, 1188, 1236, 1657, 1939, 2059
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 1282
NlaIII CATG 7 cut(s) 16, 22, 515, 1286, 1340, 1580, 1852
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 4 cut(s) 497, 554, 1636, 2224
NruI TCGCGA 1 cut(s) 130
NspI RCATGY 3 cut(s) 22, 1340, 1852
OliI CACNNNNGTG 1 cut(s) 927
PagI TCATGA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 1756
PcsI WCGNNNNNNNCGW 1 cut(s) 1789
PctI GAATGC 1 cut(s) 1944
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 4 cut(s) 563, 1310, 1487, 1897
PkrI GCNGC 9 cut(s) 90, 121, 200, 293, 542, 904, 1021, 1582, 1719
Ple19I CGATCG 2 cut(s) 217, 469
PleI GAGTC 4 cut(s) 23, 411, 1100, 1437
PpsI GAGTC 4 cut(s) 23, 411, 1100, 1437
PpuMI RGGWCCY 3 cut(s) 175, 870, 2018
PsiI TTATAA 1 cut(s) 1202
Psp5II RGGWCCY 3 cut(s) 175, 870, 2018
Psp6I CCWGG 9 cut(s) 424, 454, 487, 550, 886, 916, 979, 1696, 1999
PspEI GGTNACC 1 cut(s) 1787
PspGI CCWGG 9 cut(s) 424, 454, 487, 550, 886, 916, 979, 1696, 1999
PspPPI RGGWCCY 3 cut(s) 175, 870, 2018
PsuI RGATCY 5 cut(s) 73, 1435, 1495, 2173, 2200
PvuI CGATCG 2 cut(s) 217, 469
PvuII CAGCTG 1 cut(s) 1019
RruI TCGCGA 1 cut(s) 130
RsaI GTAC 1 cut(s) 1728
RsaNI GTAC 1 cut(s) 1727
RseI CAYNNNNRTG 3 cut(s) 17, 753, 927
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 741, 1605, 2186
SatI GCNGC 9 cut(s) 89, 120, 199, 292, 541, 903, 1020, 1581, 1718
SchI GAGTC 4 cut(s) 23, 412, 1100, 1438
SduI GDGCHC 1 cut(s) 1596
SexAI ACCWGGT 2 cut(s) 487, 1696
SfaNI GCATC 5 cut(s) 577, 1287, 1681, 1980, 2197
SfcI CTRYAG 3 cut(s) 860, 1758, 2239
SmiMI CAYNNNNRTG 3 cut(s) 17, 753, 927
SseBI AGGCCT 1 cut(s) 1756
SspMI CTAG 4 cut(s) 366, 1053, 1250, 2204
StuI AGGCCT 1 cut(s) 1756
StyI CCWWGG 6 cut(s) 33, 873, 1282, 1440, 1491, 1554
TaaI ACNGT 5 cut(s) 41, 802, 1178, 1793, 2230
TaiI ACGT 4 cut(s) 960, 1060, 1786, 2185
TaqI TCGA 7 cut(s) 27, 180, 217, 247, 807, 2167, 2179
TatI WGTACW 1 cut(s) 1726
TauI GCSGC 4 cut(s) 91, 122, 201, 543
TfiI GAWTC 4 cut(s) 563, 1310, 1487, 1897
Tru1I TTAA 3 cut(s) 741, 1605, 2186
Tru9I TTAA 3 cut(s) 741, 1605, 2186
TscAI CASTG 4 cut(s) 604, 805, 1192, 2235
TseFI GTSAC 4 cut(s) 497, 554, 1636, 2224
TseI GCWGC 5 cut(s) 291, 902, 1019, 1580, 1717
Tsp45I GTSAC 4 cut(s) 497, 554, 1636, 2224
TspDTI ATGAA 8 cut(s) 29, 963, 1536, 1565, 1694, 1794, 1920, 2235
TspGWI ACGGA 3 cut(s) 342, 349, 2001
TspRI CASTG 4 cut(s) 604, 805, 1192, 2235
VneI GTGCAC 1 cut(s) 1592
XagI CCTNNNNNAGG 2 cut(s) 130, 2088
XapI RAATTY 2 cut(s) 937, 1862
XbaI TCTAGA 1 cut(s) 2203
XceI RCATGY 3 cut(s) 22, 1340, 1852
XmiI GTMKAC 5 cut(s) 27, 484, 1060, 1068, 1330
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 4 cut(s) 366, 1053, 1250, 2204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.