Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403787.1

Orthogroup ID

OG0010205

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1023

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403787.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 568 bp

atggccgagatcatgaacatgcccgtcgactccttggaccgccgtcgcgaccgcaaagacaagtcttccgaagagcctcctcaatcctcgcctccgccgcagcaacaaccaccaccacagcaacagccgccgccgcctcctccgccatcgcgaagacgcgaccgcgacgaaaaggagagaggagatagggacctcgaccgccagcctcgccgcccggactactacgaccgaggaaatcgctcccctccgcctccgagggagagagatagggacagggaatacaagcggcggggcagccttagtccaccgcctccatatagggaccgcaggcactcgccgcctcggaggtcgccgccgccgccctttaagcggtcgaggagggaagatggagggtacgacggccggagagggagtcccagaggtgcctttggacctggaggtgataggaggtctggatatgattatgcaagtggatatgagcgggaggtgggggctagacctgcttatggtgatgacaggcctcatggtcgttatgctggacgctcatctggtggctatggcccttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005846 GO:0006139 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010445 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0048367 GO:0048509 GO:0048519 GO:0048731 GO:0048856 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1903311 GO:1903506 GO:2000011 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARS2 DUF3546

Protein Analysis

189

Amino Acids

21.73

Weight (kDa)

10.46

Isoelectric Point (pI)

122.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27100
fragaria_vesca	FvH4_3g27130 FvH4_3g27130
malus_domestica	MD00G1031700.v1.1 MD11G1180900.v1.1
prunus_persica	Prupe.6G153800_v2.0.a1 Prupe.6G153800_v2.0.a1
pyrus_communis	pycom03g11670 pycom11g15620
rosa_chinensis	RchiOBHm_Chr5g0049831
rosa_laevigata	RLG00000034651
rosa_multiflora	Rmu_co8403787.1_g000001 Rmu_sc0003753.1_g000010 Rmu_sc0005925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031750
rosa_rugosa	Rorug05G0251700
rosa_samantha	Rh5AG327500 Rh5BG338600 Rh5CG363200 Rh5DG350700
rosa_wichuraiana	Rw5G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	4 cut(s)	48, 151, 159, 165
AcoI	YGGCCR	2 cut(s)	3, 400
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	369, 506
AjnI	CCWGG	1 cut(s)	433
AoxI	GGCC	4 cut(s)	3, 400, 518, 559
ApeKI	GCWGC	2 cut(s)	100, 294
AspS9I	GGNCC	5 cut(s)	37, 190, 322, 431, 560
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	452, 521
AvaII	GGWCC	4 cut(s)	37, 190, 322, 431
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	57, 160
BbvI	GCAGC	2 cut(s)	112, 306
BccI	CCATC	2 cut(s)	154, 380
BceAI	ACGGC	2 cut(s)	27, 415
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	508
Bme1390I	CCNGG	2 cut(s)	215, 435
Bme18I	GGWCC	4 cut(s)	37, 190, 322, 431
BmgT120I	GGNCC	5 cut(s)	37, 190, 322, 431, 560
BmiI	GGNNCC	3 cut(s)	191, 323, 424
BmrFI	CCNGG	2 cut(s)	215, 435
BoxI	GACNNNNGTC	1 cut(s)	42
BpiI	GAAGAC	2 cut(s)	57, 160
BpmI	CTGGAG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	33, 229, 254, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 506
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	4 cut(s)	33, 229, 254, 341
BseLI	CCNNNNNNNGG	2 cut(s)	369, 506
BseRI	GAGGAG	4 cut(s)	69, 129, 195, 391
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	112, 306
Bsh1236I	CGCG	4 cut(s)	48, 151, 159, 165
Bsh1285I	CGRYCG	6 cut(s)	52, 163, 199, 229, 374, 403
BshFI	GGCC	4 cut(s)	5, 402, 520, 561
BshNI	GGYRCC	1 cut(s)	422
BsiEI	CGRYCG	6 cut(s)	52, 163, 199, 229, 374, 403
BsiSI	CCGG	2 cut(s)	215, 403
BslFI	GGGAC	4 cut(s)	203, 284, 335, 399
BslI	CCNNNNNNNGG	2 cut(s)	369, 506
BsmFI	GGGAC	4 cut(s)	203, 284, 335, 399
BsnI	GGCC	4 cut(s)	5, 402, 520, 561
Bsp143I	GATC	1 cut(s)	9
Bsp68I	TCGCGA	2 cut(s)	48, 151
BspANI	GGCC	4 cut(s)	5, 402, 520, 561
BspFNI	CGCG	4 cut(s)	48, 151, 159, 165
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	191, 323, 424
BspMI	ACCTGC	1 cut(s)	508
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	481
BssECI	CCNNGG	4 cut(s)	33, 229, 254, 341
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	203, 329
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	4 cut(s)	48, 151, 159, 165
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	6 cut(s)	52, 163, 199, 229, 374, 403
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 127, 133, 142, 207, 337, 358, 367, 500
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	213, 433
BstUI	CGCG	4 cut(s)	48, 151, 159, 165
BstV1I	GCAGC	2 cut(s)	112, 306
BstV2I	GAAGAC	2 cut(s)	57, 160
BstZI	CGGCCG	1 cut(s)	400
BsuRI	GGCC	4 cut(s)	5, 402, 520, 561
BtgZI	GCGATG	1 cut(s)	132
BtuMI	TCGCGA	2 cut(s)	48, 151
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	203, 329
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	5 cut(s)	37, 190, 322, 431, 560
CseI	GACGC	2 cut(s)	165, 549
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	3 cut(s)	13, 19, 524
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	3, 400
EagI	CGGCCG	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	3 cut(s)	84, 132, 237
EclXI	CGGCCG	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	520
Eco47I	GGWCC	4 cut(s)	37, 190, 322, 431
Eco52I	CGGCCG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	16, 22, 527
FaqI	GGGAC	4 cut(s)	203, 284, 335, 399
FatI	CATG	3 cut(s)	12, 18, 523
FauI	CCCGC	2 cut(s)	282, 474
FblI	GTMKAC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	5, 402, 520, 561
HapII	CCGG	2 cut(s)	215, 403
HgaI	GACGC	2 cut(s)	165, 549
Hin1II	CATG	3 cut(s)	16, 22, 527
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	29, 412
HpaII	CCGG	2 cut(s)	215, 403
HphI	GGTGA	2 cut(s)	452, 521
Hpy166II	GTNNAC	2 cut(s)	28, 305
Hpy188I	TCNGA	3 cut(s)	70, 255, 345
Hpy188III	TCNNGA	4 cut(s)	13, 47, 150, 453
Hpy8I	GTNNAC	2 cut(s)	28, 305
Hpy99I	CGWCG	4 cut(s)	29, 48, 170, 401
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 127, 133, 142, 207, 337, 358, 367, 500
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	3 cut(s)	16, 22, 527
Kzo9I	GATC	1 cut(s)	9
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	112, 306
MaeI	CTAG	1 cut(s)	495
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	57, 83, 165, 395
MlyI	GAGTC	2 cut(s)	23, 421
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	2 cut(s)	215, 403
MspR9I	CCNGG	2 cut(s)	215, 435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	4 cut(s)	48, 151, 159, 165
MwoI	GCNNNNNNNGC	9 cut(s)	97, 127, 133, 142, 207, 337, 358, 367, 500
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	3 cut(s)	16, 22, 527
NlaIV	GGNNCC	3 cut(s)	191, 323, 424
NmeAIII	GCCGAG	1 cut(s)	31
NruI	TCGCGA	2 cut(s)	48, 151
NspI	RCATGY	1 cut(s)	22
PagI	TCATGA	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	23, 420
PpsI	GAGTC	2 cut(s)	23, 420
PpuMI	RGGWCCY	1 cut(s)	190
PshAI	GACNNNNGTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	191, 323, 424
PspPI	GGNCC	5 cut(s)	37, 190, 322, 431, 560
PspPPI	RGGWCCY	1 cut(s)	190
RruI	TCGCGA	2 cut(s)	48, 151
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	17
SalI	GTCGAC	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	5 cut(s)	37, 190, 322, 431, 560
SchI	GAGTC	2 cut(s)	23, 421
ScrFI	CCNGG	2 cut(s)	215, 435
SetI	ASST	8 cut(s)	195, 350, 424, 436, 442, 452, 489, 502
SinI	GGWCC	4 cut(s)	37, 190, 322, 431
SmiMI	CAYNNNNRTG	1 cut(s)	17
SseBI	AGGCCT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	213, 433
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	3 cut(s)	27, 195, 374
TaqII	GACCGA	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	2 cut(s)	100, 294
TspDTI	ATGAA	1 cut(s)	29
VpaK11BI	GGWCC	4 cut(s)	37, 190, 322, 431
XceI	RCATGY	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.