FvH4_3g27970

Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016799
Physical Location & Seq
Forward (+)
20982963 .. 20985826
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27970.t1

Sequence Viewer

Length: 1425 bp
ATGAAAATGACAAAGTTGACGCTACAACTCACATTCTCAATGGGAAACTCAATGCAGAATCAGAACCACAATTTCATCGGTGGAGGACTTGTTTGGCTTGTTCTTGAGTGGACTGTTGCTCCATTAATTGCCTTTCTTTGCGCATTCCTCCTCTTTGCTCTTATGAAGATTTCTCTGCTTCGCCATGAAAATTCCGAAAGAAGGATTCTTGTTTTTCTTCCAATTGATTATGGAATATCAGCCGGACTGCTTTGCCTCTTTCTCGTGTTTCAGGTGTTACCACATATGATAGCTCTTTATAATTGGGTGATGATTGTTGCAGTTGCAGTGGCCACCTTGATCGGAGCTCTATTATCTTTGCTTGTTGTAGTACCTTTGGCCATGAAAAAACTAAAAGCAGTCAAAAATTACAAGACCATGAAGAAAAACATGACACAATCTTCAGATCATGGTAAATGCATAGAAAGCCAAGATCCAGCATTTAACGATACAAAATCAGCTGAAGATGAAGCTCAGTTTGAAGAAGCATTGAAAGATTTCATGCAGATGAGAGTCCTTGACACGGTGTATGAAGAGGACGAGAGGAGCTGGGCTTCACCGGACTCATTAGTCCAGGAACCCGAAAATAAGCTTGCTAAAGATCAATCCATTGCTTCTCAAGATCTGTCTAATATAGACAAATCTACCTCATTTAGAAAGTTGCTCCAGTCTACACCAATTCAATCGGTTCAAACTCACACAAGGAACTTTCAGAAGATTGAGAAAACAACACCAATTGGAAATGCCTTCCGGTTTCTTAAAGGTTCATCAAAATCAGTTTTTTCTCCTATAATGGAGTATGACCAGCATACCCTTGTTCGCCATGCTCTAGCCGAAAAATATGACGATGTGGAAGATTACTTCAGCTTTCCTCATCTTATAGCTTCATGTATCTTTGCGCTTATACAATCAGCTAGTGAGGTTGCGGCTGTTGTGAGCCCATATGGAGCTATTCTTGATGTTTTCCAGCACAGAGATAAATATTCTGGAAATGGGGAACATGTGGGATCAATCCATGTAACTTGGTGGTTTAAAGCAATTGGTGGATTTGGTGCAGCCATCGGTTTCTTTCTATGTGGGTTTAGGGTGACTCAGTCTCTGGGTGGAAAGCTGACTTATATGAGCAACTCAAGAGGGTTAGCAGCACAATTGTCAACTGTAGCTGCAATCATCATTGTCACTAAAATTAAGCTTCCAGTCTCAACCATCCATGCTTTGGTTGGATCCTTGGTAGGAGTTGGGATTGCAGATGACCCTCGGAATGTGAACTGGAAGCTCTTATTCAAGTTCATGTGTGGGTGGGTGATGACCATAGTCTTTTGTTCTGCCGTTGCTTATGTGATCTTCTCAATGTCTATACACTCCCCTGCTTATGTAGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHO4

Protein Analysis

475

Amino Acids

52.76

Weight (kDa)

8.52

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHO4 PF01384 28 - 458 1.8e-47 Phosphate transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27970
malus_domestica MD00G1008800.v1.1 MD10G1275200.v1.1
prunus_persica Prupe.4G067200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011761
rosa_laevigata RLG00000031860
rosa_roxburghii Rroxscaffold_1G00064790
rosa_rugosa Rorug04G0458700 Rorug04G0458800
rosa_samantha Rh5AG090500 Rh5BG086000 Rh5CG099800 Rh5DG086200
rosa_wichuraiana Rw5G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AasI GACNNNNNNGTC 1 cut(s) 608
Acc16I TGCGCA 1 cut(s) 142
AccB7I CCANNNNNTGG 1 cut(s) 1255
AccI GTMKAC 1 cut(s) 710
AciI CCGC 1 cut(s) 965
AclWI GGATC 4 cut(s) 467, 1054, 1257, 1270
AcoI YGGCCR 2 cut(s) 330, 378
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 3 cut(s) 426, 522, 886
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 3 cut(s) 201, 562, 1255
AflIII ACRYGT 1 cut(s) 1039
AgsI TTSAA 5 cut(s) 521, 532, 722, 731, 1324
AjnI CCWGG 1 cut(s) 612
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 1140, 1243
AlwI GGATC 4 cut(s) 467, 1054, 1257, 1270
AlwNI CAGNNNCTG 1 cut(s) 1138
AoxI GGCC 2 cut(s) 330, 378
ApeKI GCWGC 3 cut(s) 1094, 1181, 1202
ApoI RAATTY 1 cut(s) 190
AseI ATTAAT 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 143, 940
AsuHPI GGTGA 4 cut(s) 319, 588, 1138, 1354
BalI TGGCCA 2 cut(s) 332, 380
BamHI GGATCC 1 cut(s) 1262
BanII GRGCYC 2 cut(s) 349, 980
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 1106, 1189, 1193
BccI CCATC 2 cut(s) 1106, 1253
BceAI ACGGC 1 cut(s) 1352
BciT130I CCWGG 1 cut(s) 614
BcoDI GTCTC 2 cut(s) 1140, 1243
BfaI CTAG 2 cut(s) 869, 954
BfmI CTRYAG 1 cut(s) 1197
BglII AGATCT 1 cut(s) 661
BisI GCNGC 4 cut(s) 966, 1095, 1182, 1203
BlsI GCNGC 4 cut(s) 967, 1096, 1183, 1204
Bme1390I CCNGG 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 618, 1264
BmrFI CCNGG 1 cut(s) 614
BoxI GACNNNNGTC 1 cut(s) 1352
BpmI CTGGAG 1 cut(s) 689
BpuEI CTTGAG 3 cut(s) 125, 642, 1153
BsaJI CCNNGG 2 cut(s) 1266, 1295
BsaWI WCCGGW 2 cut(s) 598, 789
BsaXI ACNNNNNCTCC 4 cut(s) 75, 103, 105, 133
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 562, 1255
Bse1I ACTGG 3 cut(s) 706, 1235, 1313
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 2 cut(s) 1266, 1295
BseGI GGATG 1 cut(s) 1245
BseLI CCNNNNNNNGG 3 cut(s) 201, 562, 1255
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 527, 1145
BseNI ACTGG 3 cut(s) 706, 1235, 1313
BseRI GAGGAG 2 cut(s) 140, 598
BseXI GCAGC 3 cut(s) 1106, 1189, 1193
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 1113
BshFI GGCC 2 cut(s) 332, 380
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 243, 599, 790
BslI CCNNNNNNNGG 3 cut(s) 201, 562, 1255
BsmAI GTCTC 2 cut(s) 1140, 1243
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 332, 380
Bsp1286I GDGCHC 2 cut(s) 349, 980
Bsp143I GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
BspACI CCGC 1 cut(s) 965
BspANI GGCC 2 cut(s) 332, 380
BspCNI CTCAG 2 cut(s) 526, 1144
BspLI GGNNCC 2 cut(s) 618, 1264
BspPI GGATC 4 cut(s) 467, 1054, 1257, 1270
BsrDI GCAATG 1 cut(s) 648
BsrI ACTGG 3 cut(s) 706, 1235, 1313
BssECI CCNNGG 2 cut(s) 1266, 1295
BssMI GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 1266
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 115, 565, 1198
Bst6I CTCTTC 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 513, 1131
BstF5I GGATG 1 cut(s) 1245
BstHHI GCGC 2 cut(s) 143, 940
BstKTI GATC 8 cut(s) 342, 448, 475, 643, 664, 1049, 1265, 1383
BstMAI GTCTC 2 cut(s) 1140, 1243
BstMBI GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
BstMWI GCNNNNNNNGC 1 cut(s) 465
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 1043
BstPAI GACNNNNGTC 1 cut(s) 1352
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 1197
BstV1I GCAGC 3 cut(s) 1106, 1189, 1193
BstX2I RGATCY 3 cut(s) 472, 661, 1262
BstYI RGATCY 3 cut(s) 472, 661, 1262
BsuRI GGCC 2 cut(s) 332, 380
BtsCI GGATG 1 cut(s) 1245
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 633
CaiI CAGNNNCTG 1 cut(s) 1138
CfoI GCGC 2 cut(s) 143, 940
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 371
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 513, 1131
DpnI GATC 8 cut(s) 341, 447, 474, 642, 663, 1048, 1264, 1382
DpnII GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
DraI TTTAAA 1 cut(s) 1072
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 2 cut(s) 330, 378
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Ecl136II GAGCTC 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 1266
Eco24I GRGCYC 2 cut(s) 349, 980
Eco53kI GAGCTC 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 426, 522, 886
EcoICRI GAGCTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 1 cut(s) 1266
EcoT22I ATGCAT 1 cut(s) 461
EcoT38I GRGCYC 2 cut(s) 349, 980
ErhI CCWWGG 1 cut(s) 1266
FauNDI CATATG 2 cut(s) 285, 982
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 4 cut(s) 966, 1095, 1182, 1203
FokI GGATG 1 cut(s) 1232
FriOI GRGCYC 2 cut(s) 349, 980
Fsp4HI GCNGC 4 cut(s) 966, 1095, 1182, 1203
FspBI CTAG 2 cut(s) 869, 954
FspI TGCGCA 1 cut(s) 142
GlaI GCGC 2 cut(s) 142, 939
GluI GCNGC 4 cut(s) 966, 1095, 1182, 1203
GsaI CCCAGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 2 cut(s) 332, 380
HapII CCGG 3 cut(s) 243, 599, 790
HgaI GACGC 1 cut(s) 28
HhaI GCGC 2 cut(s) 143, 940
Hin6I GCGC 2 cut(s) 141, 938
HinP1I GCGC 2 cut(s) 141, 938
HincII GTYRAC 2 cut(s) 18, 1194
HindII GTYRAC 2 cut(s) 18, 1194
HindIII AAGCTT 2 cut(s) 629, 1229
HinfI GANTC 5 cut(s) 58, 205, 552, 602, 1129
HpaII CCGG 3 cut(s) 243, 599, 790
HphI GGTGA 4 cut(s) 319, 588, 1138, 1354
Hpy166II GTNNAC 5 cut(s) 18, 111, 711, 1194, 1306
Hpy188I TCNGA 6 cut(s) 63, 196, 344, 445, 753, 1299
Hpy188III TCNNGA 5 cut(s) 104, 659, 995, 1026, 1170
Hpy8I GTNNAC 5 cut(s) 18, 111, 711, 1194, 1306
HpyAV CCTTC 2 cut(s) 195, 796
HpyCH4III ACNGT 3 cut(s) 115, 565, 1198
HpyCH4V TGCA 8 cut(s) 55, 320, 326, 459, 544, 1094, 1205, 1286
HpyF10VI GCNNNNNNNGC 1 cut(s) 465
HpyF3I CTNAG 2 cut(s) 513, 1131
HspAI GCGC 2 cut(s) 141, 938
Kzo9I GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
LmnI GCTCC 5 cut(s) 124, 344, 585, 708, 986
Lsp1109I GCAGC 3 cut(s) 1106, 1189, 1193
MaeI CTAG 2 cut(s) 869, 954
MaeIII GTNAC 4 cut(s) 276, 1057, 1126, 1216
MalI GATC 8 cut(s) 341, 447, 474, 642, 663, 1048, 1264, 1382
MboI GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
MfeI CAATTG 4 cut(s) 222, 774, 1077, 1187
MflI RGATCY 3 cut(s) 472, 661, 1262
MhlI GDGCHC 2 cut(s) 349, 980
MlsI TGGCCA 2 cut(s) 332, 380
MluNI TGGCCA 2 cut(s) 332, 380
MlyI GAGTC 3 cut(s) 561, 596, 1123
MmeI TCCRAC 1 cut(s) 1240
Mox20I TGGCCA 2 cut(s) 332, 380
Mph1103I ATGCAT 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 536
MscI TGGCCA 2 cut(s) 332, 380
MseI TTAA 5 cut(s) 125, 483, 798, 1071, 1227
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 2 cut(s) 332, 380
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 243, 599, 790
MspR9I CCNGG 1 cut(s) 614
MunI CAATTG 4 cut(s) 222, 774, 1077, 1187
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 1 cut(s) 465
NdeI CATATG 2 cut(s) 285, 982
NdeII GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
NlaIV GGNNCC 2 cut(s) 618, 1264
NmuCI GTSAC 2 cut(s) 1126, 1216
NsbI TGCGCA 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 461
NspI RCATGY 1 cut(s) 1043
PciI ACATGT 1 cut(s) 1039
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 58, 205
PflFI GACNNNGTC 1 cut(s) 1132
PflMI CCANNNNNTGG 1 cut(s) 1255
PfoI TCCNGGA 1 cut(s) 612
PkrI GCNGC 4 cut(s) 967, 1096, 1183, 1204
PleI GAGTC 3 cut(s) 560, 596, 1123
PpsI GAGTC 3 cut(s) 560, 596, 1123
PscI ACATGT 1 cut(s) 1039
PshAI GACNNNNGTC 1 cut(s) 1352
PshBI ATTAAT 1 cut(s) 125
PsiI TTATAA 1 cut(s) 300
Psp124BI GAGCTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 612
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 618, 1264
PstNI CAGNNNCTG 1 cut(s) 1138
PsuI RGATCY 3 cut(s) 472, 661, 1262
PsyI GACNNNGTC 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 349
SaqAI TTAA 5 cut(s) 125, 483, 798, 1071, 1227
SatI GCNGC 4 cut(s) 966, 1095, 1182, 1203
Sau3AI GATC 8 cut(s) 339, 445, 472, 640, 661, 1046, 1262, 1380
SchI GAGTC 3 cut(s) 561, 596, 1123
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 349, 980
SfcI CTRYAG 1 cut(s) 1197
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 3 cut(s) 104, 657, 1168
SmoI CTYRAG 3 cut(s) 104, 657, 1168
SsiI CCGC 1 cut(s) 965
SspI AATATT 1 cut(s) 1022
SspMI CTAG 2 cut(s) 869, 954
SstI GAGCTC 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 1 cut(s) 1266
TaaI ACNGT 3 cut(s) 115, 565, 1198
TauI GCSGC 1 cut(s) 968
TfiI GAWTC 2 cut(s) 58, 205
Tru1I TTAA 5 cut(s) 125, 483, 798, 1071, 1227
Tru9I TTAA 5 cut(s) 125, 483, 798, 1071, 1227
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 2 cut(s) 1126, 1216
TseI GCWGC 3 cut(s) 1094, 1181, 1202
Tsp45I GTSAC 2 cut(s) 1126, 1216
TspRI CASTG 1 cut(s) 333
Tth111I GACNNNGTC 1 cut(s) 1132
Van91I CCANNNNNTGG 1 cut(s) 1255
VspI ATTAAT 1 cut(s) 125
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 1043
XcmI CCANNNNNNNNNTGG 2 cut(s) 1252, 1256
XmiI GTMKAC 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 869, 954
Zsp2I ATGCAT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.