RchiOBHm_Chr5g0011761

Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
7800460 .. 7804102
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29237

Sequence Viewer

Length: 1851 bp
ATGTCATCAAAGACTGACCAAGTTTCTATTGATTTGGCCATCAAAATTGTGGGGAAGTGGAAGGAGACTTATGGATGGATACCAATATTTGCAGCTTTTGCTGCAATTTTCATGGCATTTTTTACTGGTGCCAACAATCTTCCAGCTCCGGTTAGTGGCTTCTTCTCGACGCCAATTGGATCAGGGAGTTTGACTCTTCTAAAGGCATTTGTAATGGCTTGTGTGATTTATGTTCCTGGAGCAGCCTTTGCAAGTTCCACCAGTACTGTCAATGCCTTATTTTCTTATTTTCTCAAGGAAAATCAGCCTAGTGAAGGTTTCTTGATGTGGAGTCTGGTAGTAGTTCTCATCACTGCAGCAATTTGGCTTGCTCTGGCTACATATTTACAGCTACCAGTCTCATCCCTGCAATCTATACAAGGTGCTTTGTTAGGAACAATACTTGTTACTCAAGGTTTTGGCTTCATACCATTGTGGAATAAGAATCAGAACCACAATTTCATTGGTGGAGGACTTGTTTGGATTGTTCTTGAGTGGACTGTTGCTCCATTAATTTCCTTTCTATGCGCATTCCTCCTTTTTGCTCTCATGAAGGTTTCTCTGCTTCGCCATGAAAATGCCGAAAAAAGGATTCTTGTTTTTCTCCCAATTGACTATGGAATTTCAGCTGGACTGCTTTGCCTCTTTCTCATGTATCAGGTGTTACCACATATTCTTTATAGTTGGGTGATGATTGTTGCAGTTGCAGTGGCCACCTTGATTGGAGCTCTATTATCTTTGCTTTTTGTGGTTCCTTTGGCCATGAAAAAACTAAAAGCAGTCAAAAATTACAAGACCATGAAGAGAAACATGACAAAATCTTCAGATCATAGTAAAAGTAAATGCATAGAAAGCCAAGATCCAACATTTAGTGACACAAAATCAGCTGATGATGAAGCTCAGTTTGAAGAAGCCTTGCAAGATTTCATGCAGATGAGAGTCCTTGACACGGTGTATGAAGAGGACGAGAGGAGCTGGGGTTCACCGGACACATTAGTCCAAGAACCCGAAAATAAGCTTGCTGAAGATCAATCTCCTGCTTCTCAAGATCAGTCTAATATAGACAAATCTACTTCATTTAGAAAGTTGCTTGAGTCTACACCAAATCAGTTGGTTCAAAGTCACACAAGGAACTTTCAGAAGATTGAGAAAGCAACACCAATCGGGAATGCCTTCCAGTTTCTAACAGGTTCATCAAACTCATTTTTTTCTCCTGTAATGGAATATGACAGGCATACCCTCATTCGCCATGCTCTAGCCGAGAAATATGATGATGTGGAAGATTTCTTCAGTTTTCCCCATCTTATAGCTTCGTGCATCTTTGCGCTTATACAATCAACTAGTGAAGTTGCTGCTGTTGTTAGTCCATATGGAGCTATTCTTGATGTTTTTCATAATAGAGAAAAATATTCTGGAAATGGGGAACATGTGGGATCAATCCATGTGACTCGGTGGTTCAAGGCAATTGGTGGATTTGGTGCAGCCATTGGTTTCTTGCTGTGTGGGTTTAGGGTGACGCAGTCACTGGGTGGGAAGCTGACTTATATGACCAACTCAAGAGGGTTAGCAGCACAATTGTCAACTGTGGCAGCAATCATCATTGTCACTAAGATTAAGCTTCCAGTCTCAACCATTCATGCTTTGGTTGGATCCTTAGTAGGAGTTGGGATTGCAGATGACCCCCGGAATGTGAACTGGAAGCTCTTATTCAAGTTCATGTGTGGGTGGATGATGACCATAGTCTTTTGTTCTGGGGTTGCTTATGTGATATTCTCAGTGTCCATACACTCCCCAGCTTATGTAGTGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

616

Amino Acids

67.87

Weight (kDa)

7.61

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHO4 PF01384 54 - 599 1.5e-69 Phosphate transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016799)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1034
Acc16I TGCGCA 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 1136
AclWI GGATC 5 cut(s) 187, 893, 1480, 1683, 1696
AcoI YGGCCR 3 cut(s) 36, 750, 798
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 3 cut(s) 846, 1083, 1312
AcyI GRCGYC 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 1568
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 4 cut(s) 155, 314, 627, 988
AflIII ACRYGT 1 cut(s) 1465
AgsI TTSAA 4 cut(s) 947, 1157, 1498, 1750
AhlI ACTAGT 1 cut(s) 1379
AjnI CCWGG 1 cut(s) 235
AloI GAACNNNNNNTCC 2 cut(s) 1003, 1035
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 3 cut(s) 59, 403, 1669
AlwI GGATC 5 cut(s) 187, 893, 1480, 1683, 1696
AlwNI CAGNNNCTG 1 cut(s) 1564
AoxI GGCC 3 cut(s) 36, 750, 798
ApeKI GCWGC 8 cut(s) 92, 101, 242, 356, 1391, 1520, 1607, 1628
ApoI RAATTY 1 cut(s) 660
AseI ATTAAT 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 1211
AspLEI GCGC 3 cut(s) 569, 1366, 1848
AsuC2I CCSGG 1 cut(s) 1723
AsuHPI GGTGA 3 cut(s) 739, 1014, 1564
BalI TGGCCA 3 cut(s) 38, 752, 800
BamHI GGATCC 1 cut(s) 1688
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 8 cut(s) 88, 104, 254, 368, 1378, 1532, 1619, 1640
BccI CCATC 3 cut(s) 47, 69, 1347
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 1723
BcoDI GTCTC 3 cut(s) 59, 403, 1669
BcuI ACTAGT 1 cut(s) 1379
BfaI CTAG 3 cut(s) 309, 1295, 1380
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 72
BisI GCNGC 8 cut(s) 93, 102, 243, 357, 1392, 1521, 1608, 1629
BlsI GCNGC 8 cut(s) 94, 103, 244, 358, 1393, 1522, 1609, 1630
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 237, 1723
BmiI GGNNCC 3 cut(s) 130, 792, 1690
BmrFI CCNGG 2 cut(s) 237, 1723
BmrI ACTGGG 1 cut(s) 1574
BmsI GCATC 1 cut(s) 1365
BmuI ACTGGG 1 cut(s) 1574
BoxI GACNNNNGTC 1 cut(s) 1778
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 6 cut(s) 278, 435, 551, 1068, 1151, 1579
BpuMI CCSGG 1 cut(s) 1723
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 1721
BsaWI WCCGGW 2 cut(s) 148, 1024
BsaXI ACNNNNNCTCC 6 cut(s) 501, 529, 531, 559, 1003, 1033
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 314, 627, 988
Bse1I ACTGG 7 cut(s) 130, 261, 395, 1216, 1569, 1661, 1739
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 1721
BseGI GGATG 3 cut(s) 80, 401, 1773
BseLI CCNNNNNNNGG 4 cut(s) 155, 314, 627, 988
BseMII CTCAG 2 cut(s) 953, 1827
BseNI ACTGG 7 cut(s) 130, 261, 395, 1216, 1569, 1661, 1739
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 8 cut(s) 88, 104, 254, 368, 1378, 1532, 1619, 1640
BseYI CCCAGC 2 cut(s) 1014, 1831
BsgI GTGCAG 1 cut(s) 1539
BshFI GGCC 3 cut(s) 38, 752, 800
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 3 cut(s) 149, 1025, 1723
BslI CCNNNNNNNGG 4 cut(s) 155, 314, 627, 988
BsmAI GTCTC 3 cut(s) 59, 403, 1669
BsmI GAATGC 2 cut(s) 569, 1213
BsnI GGCC 3 cut(s) 38, 752, 800
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
BspANI GGCC 3 cut(s) 38, 752, 800
BspCNI CTCAG 2 cut(s) 952, 1826
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 130, 792, 1690
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 5 cut(s) 187, 893, 1480, 1683, 1696
BspT107I GGYRCC 1 cut(s) 128
BsrI ACTGG 7 cut(s) 130, 261, 395, 1216, 1569, 1661, 1739
BssECI CCNNGG 1 cut(s) 1721
BssMI GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
BssNI GRCGYC 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 4 cut(s) 268, 541, 991, 1624
Bst6I CTCTTC 3 cut(s) 201, 836, 993
BstACI GRCGYC 1 cut(s) 170
BstAPI GCANNNNNTGC 2 cut(s) 98, 248
BstC8I GCNNGC 2 cut(s) 369, 1059
BstDEI CTNAG 4 cut(s) 939, 1647, 1693, 1813
BstENI CCTNNNNNAGG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 80, 401, 1773
BstHHI GCGC 3 cut(s) 569, 1366, 1848
BstKTI GATC 7 cut(s) 182, 868, 901, 1069, 1090, 1475, 1691
BstMAI GTCTC 3 cut(s) 59, 403, 1669
BstMBI GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
BstMWI GCNNNNNNNGC 4 cut(s) 98, 101, 248, 891
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 1469
BstPAI GACNNNNGTC 1 cut(s) 1778
BstSCI CCNGG 2 cut(s) 235, 1721
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 8 cut(s) 88, 104, 254, 368, 1378, 1532, 1619, 1640
BstX2I RGATCY 2 cut(s) 898, 1688
BstYI RGATCY 2 cut(s) 898, 1688
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 38, 752, 800
BtsCI GGATG 3 cut(s) 80, 401, 1773
BtsI GCAGTG 2 cut(s) 351, 753
BtsIMutI CAGTG 4 cut(s) 351, 753, 1562, 1821
Cac8I GCNNGC 2 cut(s) 369, 1059
CaiI CAGNNNCTG 1 cut(s) 1564
CciI TCATGA 1 cut(s) 588
CfoI GCGC 3 cut(s) 569, 1366, 1848
CseI GACGC 2 cut(s) 178, 1564
Csp6I GTAC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 939, 1647, 1693, 1813
DpnI GATC 7 cut(s) 181, 867, 900, 1068, 1089, 1474, 1690
DpnII GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
DraIII CACNNNGTG 1 cut(s) 1568
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 3 cut(s) 36, 750, 798
Eam1104I CTCTTC 3 cut(s) 201, 836, 993
EarI CTCTTC 3 cut(s) 201, 836, 993
Ecl136II GAGCTC 1 cut(s) 767
Eco24I GRGCYC 1 cut(s) 769
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 3 cut(s) 846, 1083, 1312
EcoICRI GAGCTC 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 1408
FblI GTMKAC 1 cut(s) 1136
Fnu4HI GCNGC 8 cut(s) 93, 102, 243, 357, 1392, 1521, 1608, 1629
FokI GGATG 3 cut(s) 87, 388, 1780
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 8 cut(s) 93, 102, 243, 357, 1392, 1521, 1608, 1629
FspAI RTGCGCAY 1 cut(s) 568
FspBI CTAG 3 cut(s) 309, 1295, 1380
FspI TGCGCA 1 cut(s) 568
GlaI GCGC 3 cut(s) 568, 1365, 1847
GluI GCNGC 8 cut(s) 93, 102, 243, 357, 1392, 1521, 1608, 1629
GsaI CCCAGC 2 cut(s) 1018, 1835
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 38, 752, 800
HapII CCGG 3 cut(s) 149, 1025, 1723
HgaI GACGC 2 cut(s) 178, 1564
HhaI GCGC 3 cut(s) 569, 1366, 1848
Hin1I GRCGYC 1 cut(s) 170
Hin6I GCGC 3 cut(s) 567, 1364, 1846
HinP1I GCGC 3 cut(s) 567, 1364, 1846
HincII GTYRAC 1 cut(s) 1620
HindII GTYRAC 1 cut(s) 1620
HindIII AAGCTT 2 cut(s) 1055, 1655
HinfI GANTC 7 cut(s) 193, 331, 484, 631, 978, 1133, 1486
HpaII CCGG 3 cut(s) 149, 1025, 1723
HphI GGTGA 3 cut(s) 739, 1014, 1564
Hpy166II GTNNAC 5 cut(s) 537, 1022, 1137, 1620, 1732
Hpy188I TCNGA 3 cut(s) 489, 865, 1179
Hpy188III TCNNGA 9 cut(s) 166, 322, 530, 589, 1085, 1204, 1421, 1452, 1596
Hpy8I GTNNAC 5 cut(s) 537, 1022, 1137, 1620, 1732
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 55, 308, 586, 1222
HpyCH4III ACNGT 4 cut(s) 268, 541, 991, 1624
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 101, 248, 891
HpyF3I CTNAG 4 cut(s) 939, 1647, 1693, 1813
Hsp92I GRCGYC 1 cut(s) 170
HspAI GCGC 3 cut(s) 567, 1364, 1846
Kzo9I GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
LmnI GCTCC 6 cut(s) 151, 239, 550, 764, 1011, 1412
Lsp1109I GCAGC 8 cut(s) 88, 104, 254, 368, 1378, 1532, 1619, 1640
LweI GCATC 1 cut(s) 1365
MaeI CTAG 3 cut(s) 309, 1295, 1380
MaeIII GTNAC 8 cut(s) 445, 702, 911, 1160, 1483, 1552, 1560, 1642
MalI GATC 7 cut(s) 181, 867, 900, 1068, 1089, 1474, 1690
MboI GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
MfeI CAATTG 4 cut(s) 174, 648, 1503, 1613
MflI RGATCY 2 cut(s) 898, 1688
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 3 cut(s) 38, 752, 800
MluNI TGGCCA 3 cut(s) 38, 752, 800
MlyI GAGTC 5 cut(s) 187, 340, 987, 1142, 1480
MmeI TCCRAC 2 cut(s) 926, 1666
MnlI CCTC 7 cut(s) 503, 584, 692, 994, 1002, 1289, 1592
Mox20I TGGCCA 3 cut(s) 38, 752, 800
Mph1103I ATGCAT 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 1211
MscI TGGCCA 3 cut(s) 38, 752, 800
MseI TTAA 2 cut(s) 551, 1653
MslI CAYNNNNRTG 2 cut(s) 615, 971
Msp20I TGGCCA 3 cut(s) 38, 752, 800
MspA1I CMGCKG 2 cut(s) 668, 926
MspI CCGG 3 cut(s) 149, 1025, 1723
MspR9I CCNGG 2 cut(s) 237, 1723
MunI CAATTG 4 cut(s) 174, 648, 1503, 1613
Mva1269I GAATGC 2 cut(s) 569, 1213
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 98, 101, 248, 891
NciI CCSGG 1 cut(s) 1723
NdeI CATATG 1 cut(s) 1408
NdeII GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
NlaIV GGNNCC 3 cut(s) 130, 792, 1690
NmeAIII GCCGAG 1 cut(s) 1324
NmuCI GTSAC 6 cut(s) 911, 1160, 1483, 1552, 1560, 1642
NsbI TGCGCA 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 887
NspI RCATGY 1 cut(s) 1469
PagI TCATGA 1 cut(s) 588
PciI ACATGT 1 cut(s) 1465
PctI GAATGC 2 cut(s) 569, 1213
PdmI GAANNNNTTC 1 cut(s) 1211
PfeI GAWTC 2 cut(s) 484, 631
PflFI GACNNNGTC 1 cut(s) 1558
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 8 cut(s) 94, 103, 244, 358, 1393, 1522, 1609, 1630
PleI GAGTC 5 cut(s) 187, 339, 986, 1141, 1480
PpsI GAGTC 5 cut(s) 187, 339, 986, 1141, 1480
PscI ACATGT 1 cut(s) 1465
PshAI GACNNNNGTC 1 cut(s) 1778
PshBI ATTAAT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 2 cut(s) 1014, 1831
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 130, 792, 1690
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 1564
PsuI RGATCY 2 cut(s) 898, 1688
PsyI GACNNNGTC 1 cut(s) 1558
PvuII CAGCTG 2 cut(s) 668, 926
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 2 cut(s) 615, 971
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 2 cut(s) 551, 1653
SatI GCNGC 8 cut(s) 93, 102, 243, 357, 1392, 1521, 1608, 1629
Sau3AI GATC 7 cut(s) 179, 865, 898, 1066, 1087, 1472, 1688
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 5 cut(s) 187, 340, 987, 1142, 1480
ScrFI CCNGG 2 cut(s) 237, 1723
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 1 cut(s) 1365
SfcI CTRYAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 615, 971
SmlI CTYRAG 6 cut(s) 293, 450, 530, 1083, 1130, 1594
SmoI CTYRAG 6 cut(s) 293, 450, 530, 1083, 1130, 1594
SpeI ACTAGT 1 cut(s) 1379
SspI AATATT 2 cut(s) 87, 1448
SspMI CTAG 3 cut(s) 309, 1295, 1380
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 235, 1721
TaaI ACNGT 4 cut(s) 268, 541, 991, 1624
TaqI TCGA 1 cut(s) 167
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 2 cut(s) 484, 631
Tru1I TTAA 2 cut(s) 551, 1653
Tru9I TTAA 2 cut(s) 551, 1653
TscAI CASTG 4 cut(s) 358, 753, 1569, 1821
TseFI GTSAC 6 cut(s) 911, 1160, 1483, 1552, 1560, 1642
TseI GCWGC 8 cut(s) 92, 101, 242, 356, 1391, 1520, 1607, 1628
Tsp45I GTSAC 6 cut(s) 911, 1160, 1483, 1552, 1560, 1642
TspRI CASTG 4 cut(s) 358, 753, 1569, 1821
Tth111I GACNNNGTC 1 cut(s) 1558
VspI ATTAAT 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 312
XapI RAATTY 1 cut(s) 660
XceI RCATGY 1 cut(s) 1469
XcmI CCANNNNNNNNNTGG 3 cut(s) 46, 500, 1678
XmiI GTMKAC 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 1211
XspI CTAG 3 cut(s) 309, 1295, 1380
ZrmI AGTACT 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.