Prupe.4G067200_v2.0.a1

Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016799
Physical Location & Seq
Reverse (-)
3253091 .. 3256390
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G067200.1

Sequence Viewer

Length: 1824 bp
ATGTCATCAAAGAATGACCAAGTTCCGATTGATATAGCCATCAAAGTTCTGGGGAATTGGAAGGAGACCTATAGATGGATACCAATATTTGGAGCTGTTGCTGCAATTGCAATGGCTTTTGTAACTGGTGCCAACAATCTTCCAGCTCCGTTCTCAACACTTGTTGGATCAAGGGCTTTGACACTTTTAAAGGCATTTGTATTGGCTTGTGCAATCTATGTTCCTGGGGCAGCCTTTGTGAATTCCAGCAACACCGTCAATGATTTGTTTTCTGATTTTCTCAAGGAAAATCAGCCAAGTGAAGGTTTCTTGATGTGGAGCATGGTAGTTGTTCTTGTCACGGCAGCAATTTGGCTTGCTCTGGCTACAAATATGCAGCTGCCAGTCTCAGCTCAACAATCAATGCAAGGTGCTCTTTTGGGAACTATACTTGTTACTGAAGGTTTTAGCTACATGCCCCTCTGGAATAAGAATGAAAATCACAATTTCAATGGTGGAGGACTTGTTTGGATATTTGTTGAATGGACTGTTGCGCCATTCATTGCCTTCGTATGCGCATTCTTCCTCTTTACTGTCATGAAGGCTTCTCTACTTCGCAGTGAAAATACTGAAAAAAGGATTCTTGTTTTTCTTCCAATTGGCTATGGAATATCTGCTGGACTGCTTTGCCTCTTTTTCATGTTTCAGGTCATACCATATAAAACAGCTGTTAATAGTTGGGTTACTATTGTTGCAGTTGCAGCTGCCACCATGACTGGAGCGCTATTATCTTCGGTTGTGGCGGTTCCTTTGGCCATGAAAAAATTAAATGCGGCCAAAAAGTACAAGACCATGAAGAGAAACACGTCTCAATCCATAGAGAAAAAATGCATAGAAAGTCAAGATCAAGCATGCAATACAAAATCTTCAGATGATGAAGCACAGTTTGAAGAAGCCTTAAAAGATTTCATGCAGATGAGAGTCCTTGATACCGTGTACGAAGAGGAGGACGAAAAGAGCTGGGCTTCACCAGACTCAATACAAGAACCTGAGCCTGTGCCTGCTCATGATCATTCAATTTCTGAAGATCAGTCTAATACAGAGAAATCTACTTCATTCAAACAGTTGCTTCAGTCTTCACCAAACCGGGATCAAACAAGGCACTTTCACAAGATTGACAAAGCAACACCGGTCGAAAATGCCTTCCGGTTCATAAAAAGTTCATCAAAATCAGTTTTCTCTCCTGCAATCGAATACGACAGACAGACCCTCGTCCGCCACGCTTTAGCTGAAAAATATGATGATATGGAAGGCTTCTTCAGTTCCCCACAGCTTATAGCTTCATGTATCTTTGCGCTCATTCAATCTGCTAATGAACTATCTGCCTTTGTAAGTCCATATGGAGCTATAGTTGACATTTTTCAACACAGAGAAAAATATTCTGGAAATGGGGAAGATGTGGAACCAATCCATGTGACTTGGTGGTGGTTTAGGGCAATTGGTGGGTTTGGTGCTGCAATTGGTTTCTTAGTCTGTGGGAGGAGGCTGACTCAGTGTCTAGGTGGGAAGCTGACATACATAAGTAACTCAAGAGGCTTCGCAGCACAATTGTCCACTGTGGCAACAATGATTTTGGTCCATAAGATTAATCTTCCTGTTTCAAGTGTTCATGCTTTTGTTGGATCATTAGTAGGAGTTGGGACTGCAGATGACCCTAGAAATGTAAACTGGAAGCTCCTGTTCAAGTTCATATGCGGGTGGGCGCTTACCATAGTGTTTTGTTCTGGGGTTGCTTATGCCATTTTCTCAGTGTCTGTTCACTCCCCAGCCTTTGTGGTGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHO4

Protein Analysis

608

Amino Acids

66.89

Weight (kDa)

6.61

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27970
malus_domestica MD00G1008800.v1.1 MD10G1275200.v1.1
prunus_persica Prupe.4G067200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011761
rosa_laevigata RLG00000031860
rosa_roxburghii Rroxscaffold_1G00064790
rosa_rugosa Rorug04G0458700 Rorug04G0458800
rosa_samantha Rh5AG090500 Rh5BG086000 Rh5CG099800 Rh5DG086200
rosa_wichuraiana Rw5G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 128, 1816
AccB7I CCANNNNNTGG 1 cut(s) 89
AciI CCGC 4 cut(s) 782, 812, 1255, 1734
AclWI GGATC 3 cut(s) 175, 1137, 1669
AcoI YGGCCR 2 cut(s) 792, 813
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 5 cut(s) 459, 891, 1083, 1094, 1282
AfaI GTAC 2 cut(s) 824, 977
AfeI AGCGCT 1 cut(s) 762
AfiI CCNNNNNNNGG 3 cut(s) 75, 89, 302
AflIII ACRYGT 1 cut(s) 843
AgeI ACCGGT 1 cut(s) 1168
AgsI TTSAA 9 cut(s) 490, 521, 929, 1056, 1099, 1343, 1403, 1641, 1723
AhdI GACNNNNNGTC 1 cut(s) 1533
AjiI CACGTC 1 cut(s) 846
AjnI CCWGG 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 3 cut(s) 59, 391, 852
AlwI GGATC 3 cut(s) 175, 1137, 1669
AlwNI CAGNNNCTG 1 cut(s) 1793
Aor51HI AGCGCT 1 cut(s) 762
AoxI GGCC 2 cut(s) 792, 813
ApeKI GCWGC 9 cut(s) 101, 230, 344, 376, 379, 740, 743, 1493, 1580
ApoI RAATTY 1 cut(s) 241
AseI ATTAAT 1 cut(s) 1626
AsiGI ACCGGT 1 cut(s) 1168
AspLEI GCGC 5 cut(s) 535, 557, 763, 1336, 1744
AspS9I GGNCC 1 cut(s) 1615
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 2 cut(s) 999, 1110
AvaII GGWCC 1 cut(s) 1615
BaeGI GKGCMC 1 cut(s) 1821
BalI TGGCCA 1 cut(s) 794
BanI GGYRCC 2 cut(s) 128, 1816
BarI GAAGNNNNNNTAC 2 cut(s) 1538, 1570
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 9 cut(s) 88, 242, 356, 366, 388, 730, 752, 1480, 1592
BccI CCATC 2 cut(s) 47, 69
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 72
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 3 cut(s) 59, 391, 852
BfaI CTAG 2 cut(s) 1538, 1695
BfmI CTRYAG 3 cut(s) 70, 1386, 1683
BfoI RGCGCY 2 cut(s) 764, 1745
BfuI GTATCC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 225, 1127
Bme18I GGWCC 1 cut(s) 1615
BmeRI GACNNNNNGTC 1 cut(s) 1533
BmgBI CACGTC 1 cut(s) 846
BmgT120I GGNCC 1 cut(s) 1615
BmiI GGNNCC 4 cut(s) 130, 786, 1443, 1818
BmrFI CCNGG 2 cut(s) 225, 1127
BoxI GACNNNNGTC 1 cut(s) 1250
BpiI GAAGAC 1 cut(s) 1107
BplI GAGNNNNNCTC 2 cut(s) 1513, 1545
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 266, 1552
BpuMI CCSGG 1 cut(s) 1127
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 2 cut(s) 1168, 1185
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 1374, 1404
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 89, 302
Bse118I RCCGGY 1 cut(s) 1168
Bse1I ACTGG 4 cut(s) 130, 383, 760, 1712
Bse3DI GCAATG 2 cut(s) 117, 540
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 3 cut(s) 75, 89, 302
BseMI GCAATG 2 cut(s) 117, 540
BseMII CTCAG 4 cut(s) 402, 1020, 1544, 1800
BseNI ACTGG 4 cut(s) 130, 383, 760, 1712
BseRI GAGGAG 2 cut(s) 998, 1534
BseSI GKGCMC 1 cut(s) 1821
BseXI GCAGC 9 cut(s) 88, 242, 356, 366, 388, 730, 752, 1480, 1592
BseYI CCCAGC 2 cut(s) 999, 1804
Bsh1285I CGRYCG 1 cut(s) 1173
BshFI GGCC 2 cut(s) 794, 815
BshNI GGYRCC 2 cut(s) 128, 1816
BshTI ACCGGT 1 cut(s) 1168
BsiEI CGRYCG 1 cut(s) 1173
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 3 cut(s) 1126, 1169, 1186
BslFI GGGAC 1 cut(s) 1693
BslI CCNNNNNNNGG 3 cut(s) 75, 89, 302
BsmAI GTCTC 3 cut(s) 59, 391, 852
BsmBI CGTCTC 1 cut(s) 852
BsmFI GGGAC 1 cut(s) 1693
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 2 cut(s) 794, 815
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 415, 1821
Bsp143I GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
BspACI CCGC 4 cut(s) 782, 812, 1255, 1734
BspANI GGCC 2 cut(s) 794, 815
BspCNI CTCAG 4 cut(s) 401, 1021, 1543, 1799
BspHI TCATGA 2 cut(s) 576, 1045
BspLI GGNNCC 4 cut(s) 130, 786, 1443, 1818
BspMAI CTGCAG 1 cut(s) 1687
BspPI GGATC 3 cut(s) 175, 1137, 1669
BspT107I GGYRCC 2 cut(s) 128, 1816
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 2 cut(s) 117, 540
BsrFI RCCGGY 1 cut(s) 1168
BsrI ACTGG 4 cut(s) 130, 383, 760, 1712
BssAI RCCGGY 1 cut(s) 1168
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 7 cut(s) 256, 529, 574, 924, 973, 1104, 1597
Bst6I CTCTTC 2 cut(s) 830, 975
BstC8I GCNNGC 3 cut(s) 357, 892, 1041
BstDEI CTNAG 5 cut(s) 388, 1029, 1507, 1530, 1786
BstH2I RGCGCY 2 cut(s) 764, 1745
BstHHI GCGC 5 cut(s) 535, 557, 763, 1336, 1744
BstKTI GATC 6 cut(s) 170, 886, 1051, 1069, 1132, 1664
BstMAI GTCTC 3 cut(s) 59, 391, 852
BstMBI GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
BstMCI CGRYCG 1 cut(s) 1173
BstMWI GCNNNNNNNGC 3 cut(s) 101, 107, 740
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 457, 894
BstPAI GACNNNNGTC 1 cut(s) 1250
BstSCI CCNGG 2 cut(s) 223, 1125
BstSFI CTRYAG 3 cut(s) 70, 1386, 1683
BstSLI GKGCMC 1 cut(s) 1821
BstV1I GCAGC 9 cut(s) 88, 242, 356, 366, 388, 730, 752, 1480, 1592
BstV2I GAAGAC 1 cut(s) 1107
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 2 cut(s) 794, 815
BtrI CACGTC 1 cut(s) 846
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 4 cut(s) 604, 1538, 1593, 1794
Cac8I GCNNGC 3 cut(s) 357, 892, 1041
CaiI CAGNNNCTG 1 cut(s) 1793
CciI TCATGA 2 cut(s) 576, 1045
CfoI GCGC 5 cut(s) 535, 557, 763, 1336, 1744
Cfr10I RCCGGY 1 cut(s) 1168
Cfr13I GGNCC 1 cut(s) 1615
Csp6I GTAC 2 cut(s) 823, 976
CspAI ACCGGT 1 cut(s) 1168
CviQI GTAC 2 cut(s) 823, 976
DdeI CTNAG 5 cut(s) 388, 1029, 1507, 1530, 1786
DpnI GATC 6 cut(s) 169, 885, 1050, 1068, 1131, 1663
DpnII GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
DraI TTTAAA 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 1533
EaeI YGGCCR 2 cut(s) 792, 813
Eam1104I CTCTTC 2 cut(s) 830, 975
Eam1105I GACNNNNNGTC 1 cut(s) 1533
EarI CTCTTC 2 cut(s) 830, 975
EciI GGCGGA 1 cut(s) 1244
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 1615
Eco47III AGCGCT 1 cut(s) 762
Eco57I CTGAAG 5 cut(s) 459, 891, 1083, 1094, 1282
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 872
Esp3I CGTCTC 1 cut(s) 852
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 1693
FauI CCCGC 1 cut(s) 1727
FauNDI CATATG 2 cut(s) 1378, 1730
FbaI TGATCA 1 cut(s) 1048
FspAI RTGCGCAY 1 cut(s) 556
FspBI CTAG 2 cut(s) 1538, 1695
FspI TGCGCA 1 cut(s) 556
GlaI GCGC 5 cut(s) 534, 556, 762, 1335, 1743
GsaI CCCAGC 2 cut(s) 1003, 1808
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 2 cut(s) 764, 1745
HaeIII GGCC 2 cut(s) 794, 815
HapII CCGG 3 cut(s) 1126, 1169, 1186
HhaI GCGC 5 cut(s) 535, 557, 763, 1336, 1744
Hin6I GCGC 5 cut(s) 533, 555, 761, 1334, 1742
HinP1I GCGC 5 cut(s) 533, 555, 761, 1334, 1742
HincII GTYRAC 1 cut(s) 1393
HindII GTYRAC 1 cut(s) 1393
HinfI GANTC 4 cut(s) 619, 960, 1013, 1528
HpaII CCGG 3 cut(s) 1126, 1169, 1186
HphI GGTGA 2 cut(s) 999, 1110
Hpy166II GTNNAC 5 cut(s) 976, 1393, 1593, 1705, 1798
Hpy188I TCNGA 4 cut(s) 27, 274, 910, 1063
Hpy188III TCNNGA 7 cut(s) 310, 463, 577, 881, 1046, 1422, 1569
Hpy8I GTNNAC 5 cut(s) 976, 1393, 1593, 1705, 1798
HpyAV CCTTC 7 cut(s) 55, 296, 434, 556, 574, 1192, 1283
HpyCH4III ACNGT 7 cut(s) 256, 529, 574, 924, 973, 1104, 1597
HpyCH4IV ACGT 1 cut(s) 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 107, 740
HpyF3I CTNAG 5 cut(s) 388, 1029, 1507, 1530, 1786
HpySE526I ACGT 1 cut(s) 845
HspAI GCGC 5 cut(s) 533, 555, 761, 1334, 1742
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
LmnI GCTCC 6 cut(s) 92, 151, 318, 758, 1382, 1719
Lsp1109I GCAGC 9 cut(s) 88, 242, 356, 366, 388, 730, 752, 1480, 1592
MaeI CTAG 2 cut(s) 1538, 1695
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 6 cut(s) 121, 337, 433, 721, 1453, 1562
MalI GATC 6 cut(s) 169, 885, 1050, 1068, 1131, 1663
MboI GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
MfeI CAATTG 5 cut(s) 105, 636, 1476, 1497, 1586
MhlI GDGCHC 2 cut(s) 415, 1821
MlsI TGGCCA 1 cut(s) 794
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 3 cut(s) 969, 1007, 1522
MmeI TCCRAC 2 cut(s) 145, 1639
Mox20I TGGCCA 1 cut(s) 794
Mph1103I ATGCAT 1 cut(s) 872
MscI TGGCCA 1 cut(s) 794
MseI TTAA 5 cut(s) 188, 711, 806, 938, 1626
MslI CAYNNNNRTG 1 cut(s) 953
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 3 cut(s) 379, 707, 743
MspI CCGG 3 cut(s) 1126, 1169, 1186
MspR9I CCNGG 2 cut(s) 225, 1127
MunI CAATTG 5 cut(s) 105, 636, 1476, 1497, 1586
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 101, 107, 740
NciI CCSGG 1 cut(s) 1127
NdeI CATATG 2 cut(s) 1378, 1730
NdeII GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
NlaIV GGNNCC 4 cut(s) 130, 786, 1443, 1818
NmuCI GTSAC 2 cut(s) 337, 1453
NsbI TGCGCA 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 872
NspI RCATGY 2 cut(s) 457, 894
PaeI GCATGC 1 cut(s) 894
PagI TCATGA 2 cut(s) 576, 1045
PctI GAATGC 1 cut(s) 557
PfeI GAWTC 1 cut(s) 619
PflMI CCANNNNNTGG 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 1168
PleI GAGTC 3 cut(s) 968, 1007, 1522
PpsI GAGTC 3 cut(s) 968, 1007, 1522
PshAI GACNNNNGTC 1 cut(s) 1250
PshBI ATTAAT 1 cut(s) 1626
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 2 cut(s) 999, 1804
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 4 cut(s) 130, 786, 1443, 1818
PspPI GGNCC 1 cut(s) 1615
PstI CTGCAG 1 cut(s) 1687
PstNI CAGNNNCTG 1 cut(s) 1793
PvuII CAGCTG 3 cut(s) 379, 707, 743
RsaI GTAC 2 cut(s) 824, 977
RsaNI GTAC 2 cut(s) 823, 976
RseI CAYNNNNRTG 1 cut(s) 953
SaqAI TTAA 5 cut(s) 188, 711, 806, 938, 1626
Sau3AI GATC 6 cut(s) 167, 883, 1048, 1066, 1129, 1661
Sau96I GGNCC 1 cut(s) 1615
SchI GAGTC 3 cut(s) 969, 1007, 1522
ScrFI CCNGG 2 cut(s) 225, 1127
SduI GDGCHC 2 cut(s) 415, 1821
SfcI CTRYAG 3 cut(s) 70, 1386, 1683
SinI GGWCC 1 cut(s) 1615
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 2 cut(s) 281, 1567
SmoI CTYRAG 2 cut(s) 281, 1567
SphI GCATGC 1 cut(s) 894
SsiI CCGC 4 cut(s) 782, 812, 1255, 1734
SspI AATATT 2 cut(s) 87, 1418
SspMI CTAG 2 cut(s) 1538, 1695
StyD4I CCNGG 2 cut(s) 223, 1125
TaaI ACNGT 7 cut(s) 256, 529, 574, 924, 973, 1104, 1597
TaiI ACGT 1 cut(s) 848
TaqI TCGA 2 cut(s) 1173, 1230
TatI WGTACW 1 cut(s) 822
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 5 cut(s) 188, 711, 806, 938, 1626
Tru9I TTAA 5 cut(s) 188, 711, 806, 938, 1626
TscAI CASTG 4 cut(s) 604, 1538, 1600, 1794
TseFI GTSAC 2 cut(s) 337, 1453
TseI GCWGC 9 cut(s) 101, 230, 344, 376, 379, 740, 743, 1493, 1580
Tsp45I GTSAC 2 cut(s) 337, 1453
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 4 cut(s) 604, 1538, 1600, 1794
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 1615
VspI ATTAAT 1 cut(s) 1626
XapI RAATTY 1 cut(s) 241
XceI RCATGY 2 cut(s) 457, 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 2 cut(s) 1538, 1695
Zsp2I ATGCAT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.