Rorug04G0458800

Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016799
Physical Location & Seq
Forward (+)
61155877 .. 61157896
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0458800.1

Sequence Viewer

Length: 675 bp
ATGGGAAGCGGGTCAATCAAATCGAACCCAACAAGGTCGAGGAAGAGGGTGGAGGCCACGGCGGAGGACTCGGCTGGGCCTTGTCTCCTTCGCGGCAAAGATGGCAGTGCTTTTGCCAGATGCGATGGATGCCAAAAGAATGTCCCAGTGGCGCTCATAAGCTTTCACAATTGTAGCCTCGATGCCAAAATCAAGACCAACCTGGAGGCTCAAGTCGTGGAAAAGCCCAGTGAAGTGACTAAGAAGCCTCCCACAGAGAGGAAGAAATCCAGTACATCATCACAACCAAATGCCAAGAGAGCCAAGACTGACAAAGCGAACAAGAGCAAGGATCCAAATGCACCCAAGCGCCCTCTCACTGCCTTCTTCCTTTTCATGAATGATTTTAGGAAAGCCTACAAGGAAGCTAATCCTGATTCCAAGGGTGTTAAGATGGTTGCAAAGGAGGGTGGTGAAAAGTGGAAACTTATGACTGATGAGGAGAAGAAGCCTTATATGGACAAAGCTGCTGAGCTTAAAGATGAGTACAAAAAGACCTTAGAGACTGAAGCTGATGATGCTGAAGGTGAAGCTGAAGATGTTTCAGAAAAGGAAGTGCCAGAGAAGGAAGTAGAGGAAGCTTCAGAAAAGGAAGCACCAGAGAAGGAAGTGGAGGAAACATCAGATGGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHO4

Protein Analysis

224

Amino Acids

24.75

Weight (kDa)

5.64

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 112 - 181 1.5e-13 HMG-box domain
HMG_box PF00505 115 - 179 6e-19 HMG (high mobility group) box
HMG_WDHD1 PF24815 118 - 168 1e-14 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27970
malus_domestica MD00G1008800.v1.1 MD10G1275200.v1.1
prunus_persica Prupe.4G067200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011761
rosa_laevigata RLG00000031860
rosa_roxburghii Rroxscaffold_1G00064790
rosa_rugosa Rorug04G0458700 Rorug04G0458800
rosa_samantha Rh5AG090500 Rh5BG086000 Rh5CG099800 Rh5DG086200
rosa_wichuraiana Rw5G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 9, 62, 93
AclWI GGATC 2 cut(s) 326, 339
AcuI CTGAAG 4 cut(s) 567, 582, 594, 606
AfaI GTAC 2 cut(s) 274, 527
AfiI CCNNNNNNNGG 1 cut(s) 258
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 7 cut(s) 162, 407, 506, 514, 551, 572, 620
AluI AGCT 7 cut(s) 162, 407, 506, 514, 551, 572, 620
Alw26I GTCTC 2 cut(s) 89, 536
AlwI GGATC 2 cut(s) 326, 339
AoxI GGCC 2 cut(s) 54, 77
ApeKI GCWGC 1 cut(s) 506
AspLEI GCGC 2 cut(s) 154, 351
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 464, 578
BamHI GGATCC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 493
BccI CCATC 4 cut(s) 95, 119, 427, 659
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 89, 536
BfoI RGCGCY 2 cut(s) 155, 352
BisI GCNGC 2 cut(s) 94, 507
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 2 cut(s) 95, 508
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 2 cut(s) 140, 222
BmsI GCATC 4 cut(s) 110, 119, 172, 547
BmuI ACTGGG 2 cut(s) 140, 222
BpmI CTGGAG 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 57, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 146, 228, 270
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 57, 420
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 3 cut(s) 146, 228, 270
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 56, 79
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 89, 536
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 2 cut(s) 56, 79
Bsp143I GATC 1 cut(s) 331
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 3 cut(s) 9, 62, 93
BspANI GGCC 2 cut(s) 56, 79
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 2 cut(s) 326, 339
BsrI ACTGG 3 cut(s) 146, 228, 270
BssECI CCNNGG 2 cut(s) 57, 420
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 240, 510, 538
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 2 cut(s) 155, 352
BstHHI GCGC 2 cut(s) 154, 351
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 89, 536
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 4 cut(s) 102, 129, 299, 557
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 2 cut(s) 56, 79
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 2 cut(s) 112, 357
BtsIMutI CAGTG 4 cut(s) 112, 153, 235, 357
CciI TCATGA 1 cut(s) 375
CfoI GCGC 2 cut(s) 154, 351
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 273, 526
CviAII CATG 1 cut(s) 376
CviQI GTAC 2 cut(s) 273, 526
DdeI CTNAG 3 cut(s) 240, 510, 538
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 420
Eco57I CTGAAG 4 cut(s) 567, 582, 594, 606
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 379
FaiI YATR 5 cut(s) 158, 377, 470, 495, 497
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 375
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 94, 507
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 94, 507
GlaI GCGC 2 cut(s) 153, 350
GluI GCNGC 2 cut(s) 94, 507
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 155, 352
HaeIII GGCC 2 cut(s) 56, 79
HhaI GCGC 2 cut(s) 154, 351
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 2 cut(s) 152, 349
HinP1I GCGC 2 cut(s) 152, 349
HindIII AAGCTT 2 cut(s) 160, 618
HinfI GANTC 2 cut(s) 68, 416
HphI GGTGA 2 cut(s) 464, 578
Hpy188I TCNGA 3 cut(s) 586, 625, 664
Hpy188III TCNNGA 3 cut(s) 193, 376, 413
HpyAV CCTTC 5 cut(s) 98, 373, 557, 598, 637
HpyCH4V TGCA 2 cut(s) 341, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 129, 299, 557
HpyF3I CTNAG 3 cut(s) 240, 510, 538
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 2 cut(s) 152, 349
Kzo9I GATC 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 4 cut(s) 110, 119, 172, 547
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 5 cut(s) 55, 274, 358, 496, 587
MfeI CAATTG 1 cut(s) 169
MflI RGATCY 1 cut(s) 331
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 62
MseI TTAA 2 cut(s) 429, 516
MspR9I CCNGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 102, 129, 299, 557
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 235
PagI TCATGA 1 cut(s) 375
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 95, 508
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 274, 527
RsaNI GTAC 2 cut(s) 273, 526
SaqAI TTAA 2 cut(s) 429, 516
SatI GCNGC 2 cut(s) 94, 507
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 203
SfaNI GCATC 4 cut(s) 110, 119, 172, 547
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 1 cut(s) 169
SsiI CCGC 3 cut(s) 9, 62, 93
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 420
TaqI TCGA 3 cut(s) 23, 38, 180
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 272, 525
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 2 cut(s) 429, 516
Tru9I TTAA 2 cut(s) 429, 516
TscAI CASTG 4 cut(s) 112, 153, 235, 364
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 364, 392
TspRI CASTG 4 cut(s) 112, 153, 235, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.